BAC Information

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BAC

Clone NameB6Ng01-223L17
Chromosome4 (Build37)
Map Location 76,992,257 - 77,137,911
singlet/doubletdoublet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223L17.bB6Ng01-223L17.g
ACCGA038389GA038390
length1,1561,173
definitionB6Ng01-223L17.b B6Ng01-223L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,992,257 - 76,993,404)(77,136,745 - 77,137,911)
sequence
gaattcttcttagatgagaaaaaaatgtacaaagtaataactgattcctt
gagctagggaggaaagatggacacttctggtctaggtcctttcccatgtt
ttcccaagcagggacgggcaattgagtgttctcttgggctatgctgatat
aatttttattccagttcataaaaccaaagtttagtatgtcgcatttcctt
agtaacttttggaagattctaattctagcagcagggtgtcttgctgttgt
tatttttcacaattcatagcatatctctggtttcaccttcactatattca
ctctgggccttccagatgttctctctcattgaactttacaatgcctggct
tttctctgaataatattttttgtgtagattatgatgaagttgttcaatgt
ttggttctctgttatggctagtgctaatcaactcgacagcatctagcatc
atctgggagatgggcctctggtctcctcggcagaggattgtattcaatat
gttaatggaggtgggaaaaaacttctcattctaagtgaacccactgccag
tctagggtcctgaactgaataaacagagaaaaggagagttgcagcctgtg
tattgattcaactgtgcttcctgatattgctaatgtcactgggcacatca
agatccgactgcattacccaatagatttgacttcaccttgtactacggat
taaaataaactctgttatccttaagttgtttttgtctgtatattttatca
tagaaataagaagagagactaggatgcactctcacccaggttttattctg
ctgagctgcattcaaagagaggaactgcaaaaggggaaacatttttaatg
aattatatgtcaacccatctgagcccccaccacttagtcataggataaat
tgtatttagacttgtggatcaaagatgaaaagaatattttttaaccacag
tatactatggcttaataatgaataaataatcaagatataggtacttataa
gaaaaataagtaattctttctttgaaaatagacctcatagatttattata
agttaaaagaaagattttagcagcattgctttatttatgagacagtcagt
tcacctctgattgattctaacagaaacttctacagtgttatttcaaggtg
ggtcta

gaattcagagttgaatgttccacatcacagttttgcagtgttttccacct
ttgataacctccagtagaatcctgctacttaaactttccatataaagatt
cattggcccaaaccatgtcacattatcttttaatctaaaggaaagtgtgg
ggatctgaacacattatgagagaggcactgctagtttaaagttgatgacg
tttgaatataatgatatccggtaggtacctggatatactgaacatgcttc
atgccatatgtattagtcaggattctttagagtcacagaacttatggaat
gtctctctatattaagagaaattatgggaatgacttccagttggctgtcc
aactaatccagcaatgggcagctgtgaataggaagaatcttgtagcttct
cagactcacaaggctctgtgtcacctggtcttttgtataaattggaatcc
tgaaaagtgagttctaaatgatatgctagcaagtaagtgcaagcaggcag
aaaagaagaaagccttctttcttccattgtgcttatttaggcccccagga
ggcatggctgaggttaaagatatgccaccacatctgagcctaagccgttc
ttggcttggaacttgctctctcttagactggccttgaactcaaaattctg
tttgcctttttctcctgggatcaaagacaaatatatctttacctgggcct
aagctttcatagccactatgtttcaagatctggatcacaagcctgtgttt
tctaggctcaagatgtgaatcacagacacctgtgccctccatttctggac
tgtagtacattccagatgtagtcaagttgacaactggaaatagccattac
accatggttttcagtggattcacatttaggaacatgctcttgtgttaaag
aaatacatttaattgcttattttatttttccatatgaaaataacaattta
gaatgtgattaaatttacttaccattagacagaatcacatgtagccaggc
tctatgaaacttgtgtatgtgaagatgacttggacttctgaattgtcttg
cttcccagcaactgagcttcagattgcagtttaaagcatcataccaaggt
tggtggcagtgttgaaaacaactctagaataattattgatggtggagaac
aaaccatctctcccaacgaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_76992257_76993404
seq2: B6Ng01-223L17.b_45_1200

seq1  GAATTCTTCTTAGATGAGAAAAAAATGTACAAAGTAATAACTGATTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTAGATGAGAAAAAAATGTACAAAGTAATAACTGATTCCTT  50

seq1  GAGCTAGGGAGGAAAGATGGACACTTCTGGTCTAGGTCCTTTCCCATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGGGAGGAAAGATGGACACTTCTGGTCTAGGTCCTTTCCCATGTT  100

seq1  TTCCCAAGCAGGGACGGGCAATTGAGTGTTCTCTTGGGCTATGCTGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGCAGGGACGGGCAATTGAGTGTTCTCTTGGGCTATGCTGATAT  150

seq1  AATTTTTATTCCAGTTCATAAAACCAAAGTTTAGTATGTCGCATTTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTCCAGTTCATAAAACCAAAGTTTAGTATGTCGCATTTCCTT  200

seq1  AGTAACTTTTGGAAGATTCTAATTCTAGCAGCAGGGTGTCTTGCTGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTTTGGAAGATTCTAATTCTAGCAGCAGGGTGTCTTGCTGTTGT  250

seq1  TATTTTTCACAATTCATAGCATATCTCTGGTTTCACCTTCACTATATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCACAATTCATAGCATATCTCTGGTTTCACCTTCACTATATTCA  300

seq1  CTCTGGGCCTTCCAGATGTTCTCTCTCATTGAACTTTACAATGCCTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGCCTTCCAGATGTTCTCTCTCATTGAACTTTACAATGCCTGGCT  350

seq1  TTTCTCTGAATAATATTTTTTGTGTAGATTATGATGAAGTTGTTCAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGAATAATATTTTTTGTGTAGATTATGATGAAGTTGTTCAATGT  400

seq1  TTGGTTCTCTGTTATGGCTAGTGCTAATCAACTCGACAGCATCTAGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTCTGTTATGGCTAGTGCTAATCAACTCGACAGCATCTAGCATC  450

seq1  ATCTGGGAGATGGGCCTCTGGTCTCCTCGGCAGAGGATTGTATTCAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGAGATGGGCCTCTGGTCTCCTCGGCAGAGGATTGTATTCAATAT  500

seq1  GTTAATGGAGGTGGGAAAAAACTTCTCATTCTAAGTGAACCCACTGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGGAGGTGGGAAAAAACTTCTCATTCTAAGTGAACCCACTGCCAG  550

seq1  TCTAGGGTCCTGAACTGAATAAACAGAGAAAAGGAGAGTTGCAGCCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGTCCTGAACTGAATAAACAGAGAAAAGGAGAGTTGCAGCCTGTG  600

seq1  TATTGATTCAACTGTGCTTCCTGATATTGCTAATGTCACTGGGCACATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTCAACTGTGCTTCCTGATATTGCTAATGTCACTGGGCACATCA  650

seq1  AGATCCGACTGCATTACCCAATAGATTTGACTTCACCTTGTACTACGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCGACTGCATTACCCAATAGATTTGACTTCACCTTGTACTACGGAT  700

seq1  TAAAATAAACTCTGTTATCCTTAAGTTGTTTTTGTCTGTATATTTTATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAACTCTGTTATCCTTAAGTTGTTTTTGTCTGTATATTTTATCA  750

seq1  TAGAAATAAGAAGAGAGACTAGGATGCACTCTCACCCAGGTTTTATTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAAGAAGAGAGACTAGGATGCACTCTCACCCAGGTTTTATTCTG  800

seq1  CTGAGCTGCATTCAAAGAGAGGAACTGCAAAAGGGGAAACATTTTTAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGCATTCAAAGAGAGGAACTGCAAAAGGGGAAACATTTTTAATG  850

seq1  AATTATATGTCAACCCATCTGAGCCCCCACCACTTAGTCATAGGATAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATGTCAACCCATCTGAGCCCCCACCACTTAGTCATAGGATAAAT  900

seq1  TGTATTTAGACTTGTGGATCAAAGATGAAAAGAATATTTTTTAACCACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTAGACTTGTGGATCAAAGATGAAAAGAATATTTTTTAACCACAG  950

seq1  TATACTATGGCTTAATAATGAATAAATAAATCAAGATATAGGTACTTATA  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATACTATGGCTTAATAATGAATAAAT-AATCAAGATATAGGTACTTATA  999

seq1  AAGAAAATAAGTAAT--CTTCTTTGAAAATAGACCTCAATAGA-TTATTA  1047
      |  ||||||||||||   ||||||||||||||||||| ||||| ||||||
seq2  AGAAAAATAAGTAATTCTTTCTTTGAAAATAGACCTC-ATAGATTTATTA  1048

seq1  TAAAGTAAAAGAAAGATTTAAGCAGCAATGCTTTA-TTATGAGACAGTCA  1096
      |||  |||||||||||||| ||||||| ||||||| ||||||||||||||
seq2  TAAGTTAAAAGAAAGATTTTAGCAGCATTGCTTTATTTATGAGACAGTCA  1098

seq1  GTTCA-CTCTGA-TGA-TCTAACAGAAAC-TCTACAGTGT--ATTCAAAG  1140
      ||||| |||||| ||| |||||||||||| ||||||||||   ||||| |
seq2  GTTCACCTCTGATTGATTCTAACAGAAACTTCTACAGTGTTATTTCAAGG  1148

seq1  TGGGTCTA  1148
      ||||||||
seq2  TGGGTCTA  1156


seq1: chr4_77136745_77137911
seq2: B6Ng01-223L17.g_66_1238 (reverse)

seq1  AACTTGGTTGGGAGA---TGTTTG-TCTC--ACATTCATAAATA-TCTAG  43
      ||||| |||||||||    ||||| ||||   |||  |||| || |||||
seq2  AACTTCGTTGGGAGAGATGGTTTGTTCTCCACCATCAATAATTATTCTAG  50

seq1  ATTTGTTTTTCAACACTGC--ACAAACTTGGTATGGTGGTTTTAACTTGC  91
      | ||| |||||||||||||   ||| ||||||||| || ||| ||| |||
seq2  AGTTG-TTTTCAACACTGCCACCAACCTTGGTATGATGCTTTAAAC-TGC  98

seq1  AATCCTGAAGCTCAGGTGCTGGG-AGCAAGACAA-TCAGAAGTTCCAAGT  139
      ||| ||||||||||| ||||||| |||||||||| ||||||| |||||||
seq2  AAT-CTGAAGCTCAGTTGCTGGGAAGCAAGACAATTCAGAAG-TCCAAGT  146

seq1  CATCTTCACATACACAAGTTTCATAGGAGCCTGGGCTACATGTGATTCTG  189
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  CATCTTCACATACACAAGTTTCATA-GAGCCT-GGCTACATGTGATTCTG  194

seq1  TCTAATGGTAAGT-AATTTAATCACATTCTAAATTGTTATTTTCATATGG  238
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTAATGGTAAGTAAATTTAATCACATTCTAAATTGTTATTTTCATATGG  244

seq1  AAAAATAAAATAAGCAATTAAATGTATTTCTTTAACACAAGAGCATGTTC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAATAAGCAATTAAATGTATTTCTTTAACACAAGAGCATGTTC  294

seq1  CTAAATGTGAATCCACTGAAAACCATGGTGTAATGGCTATTTCCAGTTGT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTGAATCCACTGAAAACCATGGTGTAATGGCTATTTCCAGTTGT  344

seq1  CAACTTGACTACATCTGGAATGTACTACAGTCCAGAAATGGAGGGCACAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGACTACATCTGGAATGTACTACAGTCCAGAAATGGAGGGCACAG  394

seq1  GTGTCTGTGATTCACATCTTGAGCCTAGAAAACACAGGCTTGTGATCCAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGATTCACATCTTGAGCCTAGAAAACACAGGCTTGTGATCCAG  444

seq1  ATCTTGAAACATAGTGGCTATGAAAGCTTAGGCCCAGGTAAAGATATATT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAAACATAGTGGCTATGAAAGCTTAGGCCCAGGTAAAGATATATT  494

seq1  TGTCTTTGATCCCAGGAGAAAAAGGCAAACAGAATTTTGAGTTCAAGGCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGATCCCAGGAGAAAAAGGCAAACAGAATTTTGAGTTCAAGGCC  544

seq1  AGTCTAAGAGAGAGCAAGTTCCAAGCCAAGAACGGCTTAGGCTCAGATGT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGAGAGAGCAAGTTCCAAGCCAAGAACGGCTTAGGCTCAGATGT  594

seq1  GGTGGCATATCTTTAACCTCAGCCATGCCTCCTGGGGGCCTAAATAAGCA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCATATCTTTAACCTCAGCCATGCCTCCTGGGGGCCTAAATAAGCA  644

seq1  CAATGGAAGAAAGAAGGCTTTCTTCTTTTCTGCCTGCTTGCACTTACTTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAGAAAGAAGGCTTTCTTCTTTTCTGCCTGCTTGCACTTACTTG  694

seq1  CTAGCATATCATTTAGAACTCACTTTTCAGGATTCCAATTTATACAAAAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATATCATTTAGAACTCACTTTTCAGGATTCCAATTTATACAAAAG  744

seq1  ACCAGGTGACACAGAGCCTTGTGAGTCTGAGAAGCTACAAGATTCTTCCT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTGACACAGAGCCTTGTGAGTCTGAGAAGCTACAAGATTCTTCCT  794

seq1  ATTCACAGCTGCCCATTGCTGGATTAGTTGGACAGCCAACTGGAAGTCAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGCTGCCCATTGCTGGATTAGTTGGACAGCCAACTGGAAGTCAT  844

seq1  TCCCATAATTTCTCTTAATATAGAGAGACATTCCATAAGTTCTGTGACTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAATTTCTCTTAATATAGAGAGACATTCCATAAGTTCTGTGACTC  894

seq1  TAAAGAATCCTGACTAATACATATGGCATGAAGCATGTTCAGTATATCCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATCCTGACTAATACATATGGCATGAAGCATGTTCAGTATATCCA  944

seq1  GGTACCTACCGGATATCATTATATTCAAACGTCATCAACTTTAAACTAGC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTACCGGATATCATTATATTCAAACGTCATCAACTTTAAACTAGC  994

seq1  AGTGCCTCTCTCATAATGTGTTCAGATCCCCACACTTTCCTTTAGATTAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTCTCTCATAATGTGTTCAGATCCCCACACTTTCCTTTAGATTAA  1044

seq1  AAGATAATGTGACATGGTTTGGGCCAATGAATCTTTATATGGAAAGTTTA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATGTGACATGGTTTGGGCCAATGAATCTTTATATGGAAAGTTTA  1094

seq1  AGTAGCAGGATTCTACTGGAGGTTATCAAAGGTGGAAAACACTGCAAAAC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAGGATTCTACTGGAGGTTATCAAAGGTGGAAAACACTGCAAAAC  1144

seq1  TGTGATGTGGAACATTCAACTCTGAATTC  1167
      |||||||||||||||||||||||||||||
seq2  TGTGATGTGGAACATTCAACTCTGAATTC  1173


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