BAC Information

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BAC

Clone NameB6Ng01-224H21
Chromosome4 (Build37)
Map Location 13,703,906 - 13,824,079
singlet/doubletdoublet
Overlap geneRunx1t1
Upstream geneOTTMUSG00000004461, LOC100039988
Downstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224H21.bB6Ng01-224H21.g
ACCGA038936GA038937
length8731,008
definitionB6Ng01-224H21.b B6Ng01-224H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,703,906 - 13,704,775)(13,823,075 - 13,824,079)
sequence
gaattcacaaacataactccactcctggcaatgagttctctacactgctt
ttcccaaagtgataaacatgttggactttgtagagaagtttcatgggaat
tattagaaaagcagctttgtattcatataatatttatggaaataatatgt
gtttgaatatttgtatactgcgccatgggcaagtgtataatcatttaact
agctggtctagcctggtgtacctggcgactgacctggcctggtggtctgt
tgctcacaggcattaagcacctgtgcctggtgcaccctctctgcaggttt
gctcctgtctatttatgtagcatcctcctgcctttccttcagagtttttc
ttcaccatcaatatgcacgtggagaaagtagtataaaaatatacttttag
ccactgtcagtgttcataactcactctctacaaacagactcttcactaaa
gccccaccctgcctcctgagctccccaagttttgctaggttttatcaccc
gacccacccccgacccccccatagtttttcagaatgcaggtgagaacagc
ccagtgctattatcagcagggcactgagttcactaagagaggactgagaa
agactgaaagacaaatggctagttgtggttttcaggtgagcttgctctgt
taatctgggctgaaatggacaggaacaggtggtgtggcggaggagaggat
gggtaggggttgctctggccaagagcaggttgccagctgggccagtgatc
tagttctgttgtcagtgtacccacagcagtggaaaaggtaaccttttcac
attaaaggcaatcttgacaactttctgaaaacgttaattgaggtattaaa
tgtattaatcttattaagttgaa

gaattcatggattcagagggaatacagcagggcaaatgtggggcaatggg
ctatgcacagacagcctggtttccagtagaggctaggtgtgaaccctgga
gaaacccagtggtgttaattcccacctacatgggacagaaggtctcctgg
acccctcgctcctgtcatagttaccgcccccacaggagaagtgtggcttt
tagtcacatagacaatgtcccaagcttctggccttaaggctagccgactc
ccagttacctagccacaacaagataacaagcccaccataagagagactgc
ttggcccctcctcactctcttactctcttaagcttttactttccttactc
tccctctaactctcttcctctctcccccttccctcttccctccatatggc
catggtgggtctctctctcgttctaccttttctctttccccctgccttaa
gttctaaaccatagactgtctctgctcatcaaggcccgctgtgcttggat
gatgggataggctttctcctaatgagctgtgcctaatctcccgtcagaag
gccttcctgtgctccagccacagactggactaaggactctcacttgcatg
ggaacctctctccctctgccctctttcctgtatctccagcactgagggtg
tcgccctggggcctctggtatgggggaggggctgccccttgtccccccac
tgctgagtggggtcagtggcttcacacagccagatgcccacctggggcca
agtgggaagcgaccagcagtcttcctgcatctacctgcccagagcacagg
aactctggcaggacacgggttctctccttctctctttcccctacacccag
cagccccacaggcaaagatgtgaagcttaaaaagctaaaaagccctttgt
tggcagataagaggccatgagaatggccactgttcttactctggactgtt
aagtacatgaatcttaaagtatttctaatgtcttagtactaagccttatg
taaatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13703906_13704775
seq2: B6Ng01-224H21.b_47_919

seq1  GAATTCACAAACATAACTCCACTCCTGGCAATGAGTTCTCTACACTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAACATAACTCCACTCCTGGCAATGAGTTCTCTACACTGCTT  50

seq1  TTCCCAAAGTGATAAACATGTTGGACTTTGTAGAGAAGTTTCATGGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAAGTGATAAACATGTTGGACTTTGTAGAGAAGTTTCATGGGAAT  100

seq1  TATTAGAAAAGCAGCTTTGTATTCATATAATATTTATGGAAATAATATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAAAAGCAGCTTTGTATTCATATAATATTTATGGAAATAATATGT  150

seq1  GTTTGAATATTTGTATACTGCGCCATGGGCAAGTGTATAATCATTTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAATATTTGTATACTGCGCCATGGGCAAGTGTATAATCATTTAACT  200

seq1  AGCTGGTCTAGCCTGGTGTACCTGGCGACTGACCTGGCCTGGTGGTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTCTAGCCTGGTGTACCTGGCGACTGACCTGGCCTGGTGGTCTGT  250

seq1  TGCTCACAGGCATTAAGCACCTGTGCCTGGTGCACCCTCTCTGCAGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACAGGCATTAAGCACCTGTGCCTGGTGCACCCTCTCTGCAGGTTT  300

seq1  GCTCCTGTCTATTTATGTAGCATCCTCCTGCCTTTCCTTCAGAGTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGTCTATTTATGTAGCATCCTCCTGCCTTTCCTTCAGAGTTTTTC  350

seq1  TTCACCATCAATATGCACGTGGAGAAAGTAGTATAAAAATATACTTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCATCAATATGCACGTGGAGAAAGTAGTATAAAAATATACTTTTAG  400

seq1  CCACTGTCAGTGTTCATAACTCACTCTCTACAAACAGACTCTTCACTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTCAGTGTTCATAACTCACTCTCTACAAACAGACTCTTCACTAAA  450

seq1  GCCCCACCCTGCCTCCTGAGCTCCCCAAGTTTTGCTAGGTTTTATCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCCTGCCTCCTGAGCTCCCCAAGTTTTGCTAGGTTTTATCACCC  500

seq1  GACCCACCCCCGACCCCCCCATAGTTTTTCAGAATGCAGGTGAGAACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACCCCCGACCCCCCCATAGTTTTTCAGAATGCAGGTGAGAACAGC  550

seq1  CCAGTGCTATTATCAGCAGGGCACTGAGTTCACTAAGAGAGGACTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTATTATCAGCAGGGCACTGAGTTCACTAAGAGAGGACTGAGAA  600

seq1  AGACTGAAAGACAAATGGCTAGTTGTGGTTTTCAGGTGAGCTTGCTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAAAGACAAATGGCTAGTTGTGGTTTTCAGGTGAGCTTGCTCTGT  650

seq1  TAATCTGGGCTGAAATGGACAGGAACAGGTGGTGTGGCGGAGGAGAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGGGCTGAAATGGACAGGAACAGGTGGTGTGGCGGAGGAGAGGAT  700

seq1  GGGTAGGGGTTGCTCTGGCCAAGAGCAGGTTGCCAGCTGGGCCAGTGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGGGTTGCTCTGGCCAAGAGCAGGTTGCCAGCTGGGCCAGTGATC  750

seq1  TAGTTCTGTTGTCAGTGTACCCACAGCAGTGGAAAAGG-GACCTTTTCAC  799
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  TAGTTCTGTTGTCAGTGTACCCACAGCAGTGGAAAAGGTAACCTTTTCAC  800

seq1  ATAAAAGGCAATCTTGACAAACTTTCTGAAAACGTTAA-TGAGGTA-TAA  847
      || ||||||||||||||| ||||||||||||||||||| ||||||| |||
seq2  ATTAAAGGCAATCTTGAC-AACTTTCTGAAAACGTTAATTGAGGTATTAA  849

seq1  ATG-AATAATCTTAGTAAGTTGAA  870
      ||| | |||||||| |||||||||
seq2  ATGTATTAATCTTATTAAGTTGAA  873


seq1: chr4_13823075_13824079
seq2: B6Ng01-224H21.g_68_1075 (reverse)

seq1  TTGATTTACATAAGGCTTAGTTACTAAGACATTAGAAATACTTTAAGATT  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGATTTACATAAGGCTTAG-TACTAAGACATTAGAAATACTTTAAGATT  49

seq1  CATGTACTTAACAGTCCAGAGTAAGAACAGTGGCCA-TCTCATGGCCTC-  98
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  CATGTACTTAACAGTCCAGAGTAAGAACAGTGGCCATTCTCATGGCCTCT  99

seq1  TATCTGCC-ACAAAGGGCTTTTTAGCTTTTT-AGCTTCACATCTTTGCCT  146
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  TATCTGCCAACAAAGGGCTTTTTAGCTTTTTAAGCTTCACATCTTTGCCT  149

seq1  GTGGGGCTGCTGGGTGTAGGGGAAAGAGAGAAGGAGAGAACCCGTGTCCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTGCTGGGTGTAGGGGAAAGAGAGAAGGAGAGAACCCGTGTCCT  199

seq1  GCCAGAGTTCCTGTGCTCTGGGCAGGTAGATGCAGGAAGACTGCTGGTCG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGTTCCTGTGCTCTGGGCAGGTAGATGCAGGAAGACTGCTGGTCG  249

seq1  CTTCCCACTTGGCCCCAGGTGGGCATCTGGCTGTGTGAAGCCACTGACCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACTTGGCCCCAGGTGGGCATCTGGCTGTGTGAAGCCACTGACCC  299

seq1  CACTCAGCAGTGGGGGGACAAGGGGCAGCCCCTCCCCCATACCAGAGGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCAGTGGGGGGACAAGGGGCAGCCCCTCCCCCATACCAGAGGCC  349

seq1  CCAGGGCGACACCCTCAGTGCTGGAGATACAGGAAAGAGGGCAGAGGGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCGACACCCTCAGTGCTGGAGATACAGGAAAGAGGGCAGAGGGAG  399

seq1  AGAGGTTCCCATGCAAGTGAGAGTCCTTAGTCCAGTCTGTGGCTGGAGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTCCCATGCAAGTGAGAGTCCTTAGTCCAGTCTGTGGCTGGAGCA  449

seq1  CAGGAAGGCCTTCTGACGGGAGATTAGGCACAGCTCATTAGGAGAAAGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGCCTTCTGACGGGAGATTAGGCACAGCTCATTAGGAGAAAGCC  499

seq1  TATCCCATCATCCAAGCACAGCGGGCCTTGATGAGCAGAGACAGTCTATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCATCATCCAAGCACAGCGGGCCTTGATGAGCAGAGACAGTCTATG  549

seq1  GTTTAGAACTTAAGGCAGGGGGAAAGAGAAAAGGTAGAACGAGAGAGAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAACTTAAGGCAGGGGGAAAGAGAAAAGGTAGAACGAGAGAGAGA  599

seq1  CCCACCATGGCCATATGGAGGGAAGAGGGAAGGGGGAGAGAGGAAGAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCATGGCCATATGGAGGGAAGAGGGAAGGGGGAGAGAGGAAGAGAG  649

seq1  TTAGAGGGAGAGTAAGGAAAGTAAAAGCTTAAGAGAGTAAGAGAGTGAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGGAGAGTAAGGAAAGTAAAAGCTTAAGAGAGTAAGAGAGTGAGG  699

seq1  AGGGGCCAAGCAGTCTCTCTTATGGTGGGCTTGTTATCTTGTTGTGGCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCAAGCAGTCTCTCTTATGGTGGGCTTGTTATCTTGTTGTGGCTA  749

seq1  GGTAACTGGGAGTCGGCTAGCCTTAAGGCCAGAAGCTTGGGACATTGTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTGGGAGTCGGCTAGCCTTAAGGCCAGAAGCTTGGGACATTGTCT  799

seq1  ATGTGACTAAAAGCCACACTTCTCCTGTGGGGGCGGTAACTATGACAGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACTAAAAGCCACACTTCTCCTGTGGGGGCGGTAACTATGACAGGA  849

seq1  GCGAGGGGTCCAGGAGACCTTCTGTCCCATGTAGGTGGGAATTAACACCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGGGTCCAGGAGACCTTCTGTCCCATGTAGGTGGGAATTAACACCA  899

seq1  CTGGGTTTCTCCAGGGTTCACACCTAGCCTCTACTGGAAACCAGGCTGTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTCTCCAGGGTTCACACCTAGCCTCTACTGGAAACCAGGCTGTC  949

seq1  TGTGCATAGCCCATTGCCCCACATTTGCCCTGCTGTATTCCCTCTGAATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATAGCCCATTGCCCCACATTTGCCCTGCTGTATTCCCTCTGAATC  999

seq1  CATGAATTC  1005
      |||||||||
seq2  CATGAATTC  1008


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