BAC Information

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BAC

Clone NameB6Ng01-224H24
Chromosome4 (Build37)
Map Location 146,433,701 - 146,537,721
singlet/doubletdoublet
Overlap geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657
Upstream geneLOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
Downstream geneLOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224H24.bB6Ng01-224H24.g
ACCGA038942GA038943
length1,1041,175
definitionB6Ng01-224H24.b B6Ng01-224H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,536,687 - 146,537,721)(146,433,701 - 146,434,545)
sequence
gaattcatcccatatacagacaacaatcccagacactattgtggatgaca
attagtgcttgctgacaggagcctgatatagatgtctcctgagaggctct
gccagtgcctaaaaaatacaaaggcagatgcttgcagccaaccaacggac
tgaacacagggtccatatggcagaagttagagaaaggactgaaggagctg
aaaaggtttgcaaccctatagggagaacaacaatatcaaacaaccagaca
caccagagctcccaaagactaaatcaccaaccaacgagtacaaatggagc
aacccatgtccccagctacatatttaatagaggatggtcatgttgggcat
gcctgggaggagaggtcctaggtcctgtgtagacttgatggcccagtgta
cattaatgccagggaatggagacaggagtaggtgggggcatgtgggagga
ccctcatagaagcaggcgggaagtaatagggggtttctggaggggaaccg
ggaaaggggataatatttgaaatataaataaataaaatatacaaaaaatt
agtcaccaagatatttaagtaaaatggaatattgaaagtgtcttaatcat
acaccaatagccaaggtcctcatttgtacccccccatcctcagtgtaccc
cctcttcctatctttgtaaatgggagcctcatgaacctaataagtcaagc
tatgccttgaatttgcccctttttacatctaaaatttctacatctacagt
ttttacatctaatttctacaattttttacatctaaaattttccttagcac
aattataaaatttacaacttctctcttgctgtccatgcttcctctcactt
attagcatcaaaggatgaatttctattaaaaaatattgtcctacctttcc
cctgaatcctctcagactctgagctgcatttgttcaacccttcaacctgc
aactgtactcttggtcatggtcttcatccctgacctcacaccaccaagtt
tcctgactatcagccgcttttgaactcaccctactgaatgtatccttttg
gagttcttcattgtgattcctagatcttctgcctctgctccatctttctc
agac
gaattcatcagagaattcatacaggagagaaaccttacaaatgtaatgaa
tgtgacaaatgctttactgacaaaggcagtctgagagttcatcagagatt
tcatacaggagagaaaccttacaaatgtagtgaatgtgacaaatgtttta
ttcaaaaatgcagtctgataattcatcagagaattcatacaggagagaaa
ccttacaaatgtagtgaatgtgacaaagctttactgagaaagtcaatctg
agaaggcatcagagaactcatacaggggagaattcttacaaatgtattga
atgtgacaaatgttttgcccagaaatcctatcttgtttttaatcacagaa
atcatacattaaagaagccttacaaatgcagtcaatgtgacaaatgattt
tcccacaaacttagtctgagaatgcatcagagaattcatacagtagagaa
aacttacaaaaatgcagtgaatgtgataaatgctttactaataaaggcag
actgagaattaatcagataatttatacatttaaaaaaacccttacaagta
ttttgtatgtgataaatgcagtacccacaacatcagtctgacaaatcaac
agatatttcaaacagtagagcaacattataaatgaaatgaatgagatagt
cctttaacaagaaatatcatcttaaaattcactggagaattcttccaaaa
gggaaacttttcaaatacattgacggtttgaatcctttattttggcctat
ctcttagaatgtaatagataatttatacaggcaagaatcttaacaaatat
aatatatgctgaaatatctttgacttcatttcagtgcagaaaaaatatgt
aaaaaaatatttttatgggaaaaatagttctcctggggaaatgtggcata
tgttttacacgggtaatatttctttttcaacagtcagtgctctaaactag
agaattattattgaatctgaaaacttttgaaaaccttcatgcaatgttca
aatctagaataatgtcaacttatttatgctgggcagtactctgaatatat
gataaggtgaagaaacatttcattaactttttacttgtttcacccttcaa
tatttatatgaatgaagttcagggtgtgcaaaggcagaagaaatatggaa
tggttgtgttgcaacaatttcatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146536687_146537721
seq2: B6Ng01-224H24.b_96_1151 (reverse)

seq1  GTCTGAG-AAGAT-GAGCAGA-GCAG-AGATCTAGGAAATCAC-ATAGAG  45
      ||||||| ||||| ||||||| |||| ||||||||| |||||| ||  ||
seq2  GTCTGAGAAAGATGGAGCAGAGGCAGAAGATCTAGG-AATCACAATGAAG  49

seq1  AACT-CAAAAAGATACA-TCAGTAGGTGAAGTTTCAAAAGC-GCTGATTA  92
      |||| ||||| |||||| ||||||||   || ||||||||| ||||| ||
seq2  AACTCCAAAAGGATACATTCAGTAGGGTGAG-TTCAAAAGCGGCTGA-TA  97

seq1  GTCAGG-AACTT-GTGGTGTGAGGTCA-GGATG-AGACCATGACC-AGAG  137
      |||||| ||||| |||||||||||||| ||||| ||||||||||| ||||
seq2  GTCAGGAAACTTGGTGGTGTGAGGTCAGGGATGAAGACCATGACCAAGAG  147

seq1  TACAG-TGCAGGTTG-AGGGTTGAAC-AATGCAGCTCAGAGTCTGAGAGG  184
      ||||| ||||||||| |||||||||| |||||||||||||||||||||||
seq2  TACAGTTGCAGGTTGAAGGGTTGAACAAATGCAGCTCAGAGTCTGAGAGG  197

seq1  ATTCA-GGGAAAGGTAGGAC-ATATTTTT--ATAG-AATTCATCC-TTGA  228
      ||||| |||||||||||||| ||||||||  |||| ||||||||| ||||
seq2  ATTCAGGGGAAAGGTAGGACAATATTTTTTAATAGAAATTCATCCTTTGA  247

seq1  TGCTAATAAGTGAGAGGAAGCATGGACAGCAAGAGAGAAGTTGTAAATTT  278
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATAAGTGAGAGGAAGCATGGACAGCAAGAGAGAAGTTGTAAATTT  297

seq1  TATAATTGTGCTAAGG-AAATTTTAGATGTAAAAAA-TGTAGAAATTAGA  326
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  TATAATTGTGCTAAGGAAAATTTTAGATGTAAAAAATTGTAGAAATTAGA  347

seq1  TGTAAAAACTGTAGATGTAGAAATTTTAGATGTAAAAAGGGGCAAATTCA  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAACTGTAGATGTAGAAATTTTAGATGTAAAAAGGGGCAAATTCA  397

seq1  AGGCATAGCTTGACTTATTAGGTTCATGAGGCTCCCATTTACAAAGATAG  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAGCTTGACTTATTAGGTTCATGAGGCTCCCATTTACAAAGATAG  447

seq1  GAAGAGGGGGTACACTGAGGATGGGGGGGTACAAATGAGGACCTTGGCTA  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGGGTACACTGAGGATGGGGGGGTACAAATGAGGACCTTGGCTA  497

seq1  TTGGTGTATGATTAAGACACTTTCAATATTCCATTTTAATTATATATCTT  526
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  TTGGTGTATGATTAAGACACTTTCAATATTCCATTTTACTTAAATATCTT  547

seq1  GGTGACTAATTTTTTGTATATTTTATTTATTTATATTTCAAATATTATCC  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTAATTTTTTGTATATTTTATTTATTTATATTTCAAATATTATCC  597

seq1  CCTTTCCCGGTTCCCCTCCAGAAACCCCCTATTACTTCCCGCCTGCTTCT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCGGTTCCCCTCCAGAAACCCCCTATTACTTCCCGCCTGCTTCT  647

seq1  ATGAGGGTCCTCCCACATGCCCCCACCTACTCCTGTCTCCATTCCCTGGC  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGTCCTCCCACATGCCCCCACCTACTCCTGTCTCCATTCCCTGGC  697

seq1  ATTAATGTACACTGGGCCATCAAGTCTACACAGGACCTAGGACCTCTCCT  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTACACTGGGCCATCAAGTCTACACAGGACCTAGGACCTCTCCT  747

seq1  CCCAGGCATGCCCAACATGACCATCCTCTATTAAATATGTAGCTGGGGAC  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCATGCCCAACATGACCATCCTCTATTAAATATGTAGCTGGGGAC  797

seq1  ATGGGTTGCTCCATTTGTACTCGTTGGTTGGTGATTTAGTCTTTGGGAGC  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTGCTCCATTTGTACTCGTTGGTTGGTGATTTAGTCTTTGGGAGC  847

seq1  TCTGGTGTGTCTGGTTGTTTGATATTGTTGTTCTCCCTATTGGGTTGCAA  876
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTGGTGTGTCTGGTTGTTTGATATTGTTGTTCTCCCTATAGGGTTGCAA  897

seq1  ACCTTTTCAGCTCCTTCAGTCCTTTCTCTAACTTCTGCCATATGGACCCT  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCAGCTCCTTCAGTCCTTTCTCTAACTTCTGCCATATGGACCCT  947

seq1  GTGTTCAGTCCATTGGTTGGCTGCAAGCATCTGCCTTTGTATTTTTTAGG  976
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGTCCGTTGGTTGGCTGCAAGCATCTGCCTTTGTATTTTTTAGG  997

seq1  CACTGGCAGAGCCTCTCAGGAGACATCTATATCAGGCTCCTGTCAGCAAG  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCAGAGCCTCTCAGGAGACATCTATATCAGGCTCCTGTCAGCAAG  1047

seq1  CACTAATTG  1035
      |||||||||
seq2  CACTAATTG  1056

seq1: chr4_146433701_146434545
seq2: B6Ng01-224H24.g_377_1242

seq1  ATGTTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACAT  50

seq1  TAAAGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAA  100

seq1  CTTAGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAACTTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAACTTACAA  150

seq1  AAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAAT  200

seq1  TAATCAGATAATTTATACATTTAAAAAAACCCTTACAAGTATTTTGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGATAATTTATACATTTAAAAAAACCCTTACAAGTATTTTGTATG  250

seq1  TGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTTC  300

seq1  AAACAGTAGAGCAACATTATAAATGAAATGAATGAGATAGTCCTTTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTAGAGCAACATTATAAATGAAATGAATGAGATAGTCCTTTAACA  350

seq1  AGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACTT  400

seq1  TTCAAATACATTGACGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATACATTGACGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGAA  450

seq1  TGTAATAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATGC  500

seq1  TGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAAAAA-A  549
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAAAAATA  550

seq1  TTTTTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCATATGTTTTACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCATATGTTTTACA  600

seq1  CGGGTAATATT--CTTTTCAACAGTCAGTGCTCTAAACTAGAGAATTATT  647
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  CGGGTAATATTTCTTTTTCAACAGTCAGTGCTCTAAACTAGAGAATTATT  650

seq1  A-TGAATCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAAATCTTAGA  696
      | ||||||||||||||||||||||||||||||||||||||||||||   |
seq2  ATTGAATCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAAATCTAGAA  700

seq1  TAATGTCAACT--ATTATGCT-GGCAGTAACTCTGAATATATGATA--GT  741
      |||||||||||   ||||||| |||||| |||||||||||||||||  ||
seq2  TAATGTCAACTTATTTATGCTGGGCAGT-ACTCTGAATATATGATAAGGT  749

seq1  GAAGAAACATTTTCATTAAACTTTTACTTG-TTCACCCTCAAATA-TTAT  789
      ||||||||| |||||||||  ||||||||| ||||||||  |||| ||||
seq2  GAAGAAACA-TTTCATTAACTTTTTACTTGTTTCACCCTTCAATATTTAT  798

seq1  ATG-ATGAAG-TCA-GGTGTG-AAAGCCAGAAG-AATATG--AT-GTTG-  830
      ||| |||||| ||| |||||| |||| |||||| ||||||  || |||| 
seq2  ATGAATGAAGTTCAGGGTGTGCAAAGGCAGAAGAAATATGGAATGGTTGT  848

seq1  --TGCAACAA-TTCATGG  845
        |||||||| |||||||
seq2  GTTGCAACAATTTCATGG  866