BAC Information

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BAC

Clone NameB6Ng01-224I08
Chromosome4 (Build37)
Map Location 145,539,879 - 145,659,755
singlet/doubletdoublet
Overlap geneLOC666386, LOC666390, LOC100041433
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224I08.bB6Ng01-224I08.g
ACCGA038957GA038958
length1,1421,137
definitionB6Ng01-224I08.b B6Ng01-224I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,539,879 - 145,540,842)(145,658,619 - 145,659,755)
sequence
gaattctctgatgaattctcagatggccattttcagtaaaggatttgtca
cattgactacatttgtatggtttctctcctgtatgaattctctgatgaat
attaagatgggatttttgggtaaagcatttgtcacattcactgcatttgt
aaggtttatctcctgtatgaatcctctgatgaattctcagattgcctttt
tcagtaaagcatttctcacatacattgcatttgtaaggtttctctcctgt
atgaattctctgatgaatattaagatgagatttttgggtaaagcatttgt
cacattcactacatttgtaaggtttctctcctgtatgaattctctgatga
atattaagatgaaatttgtgggtaaagcatttgtcacattcactacattt
ataaattttctcttctgcatgaattccctgatggatactaagatcgatct
gatgggtaaagcatttgtcacttttactacttctgtaatgtttcttttca
tgataaattctctgctgactttgaagtttgtctctctgggtaagatattt
gtcaaatttactacatttgtaagggttcactccagtattatttcgtttca
ccatgactttatgtttagaaataaaagccttctcagattctgcatttccg
ttgtgttttttcttctgcatgtggattccctgattgagactaatggtaga
aaacaaagttaaactgtttacagagtcattgtatttgcaaacttctttag
tgttcctgggcttaagtcttttttggttcgaaaattgaagagcatcagag
gtatgattagttttgtaaggtgtacattggggggcttcaagtatcacatt
tgctaagtttgtcccatttagaagacttctcttgaatattcatgtgtcat
ggacaatgtactggctgtcttgatccaagaccttctcatactttccaaca
tatgcaatgattttctgaaaaaagtagggagggcaattagaggttgacat
gaattacttatataaggagtaagtgattcatatcagtggatctcatggat
tcgtactcctccaagaagaggttttctctttttgatcaatacatggtatc
ctcaaagaacttcaaatatggtctattatcaatgaattggaa
gaattcatacagtagagaaaatttacaaaaatgcagtgaatgtgataaat
gctttactaataaaggcagactgagaattaatcagataatttatacattt
aaaaaaaaaccttacaagtattttgtatgtgataaatgcagtacccacaa
catcagtctgacaaatcaacaaatatttcaaacagtagagcaacattata
aatgaaatgaatgagataatcctttaacaagaaatatcatcttaaaattc
actggagaattcttccaaaagggaaacttttcaaatacattgatggtttg
aatcctttattttggcctatctcttagaatgtaacagataatttatacag
gcaagaatcttaacaaatataatatatgctgaaatatctttgacttcatt
tcagtgcagaaaaaatatgtaaaatattttttatgggaaaaatagttctc
ctggggaaatgtggcatatgttttacacgggtaatattcttttcaacagt
tagtgctctaaactagagaattatgaatctgaaaacttttgaaaaccttc
atgcaatgttcaaatcttagataatgtcaactattatgctggcagtaact
ctgaatatatgataatgaagaaacattttcattaaacttttacttgtttc
accctcaaatattatatgatgaagtcaggtgtgaaagccagaagaatatg
atgttgtgcaacaattcatggagatagaaatgatccattccaaaaggaaa
ctaaataaagagtgtactatcgccttcaaaatgtctaataaaactgggca
gcatttttgtatatttaattcaaatgaagaaattgacacagattgtactt
gaatagtgtatttgacaaactgagcccaccaagactgcatgttctttaat
tcctataatatgcctacagatgtgaagtgtgctttgagttatccagtatt
catttaattctttatcaccgtcaattgtgacaattgatttattggtttca
cgtttcaagaatagtgacctgacttatgagttccctaatgctctggtcaa
catctctctttcctcaatgcccttgtaataaaagccggaatatttttaaa
caaggttggacttggcttgtttttcaagttttgcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145539879_145540842
seq2: B6Ng01-224I08.b_229_1190

seq1  GAATTCTCAGATTGCCTTTTTCAGTAAAGCATTTCTCACATACAATGCAT  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAATTCTCAGATTGCCTTTTTCAGTAAAGCATTTCTCACATACATTGCAT  50

seq1  TTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATATTAAGATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATATTAAGATGAGA  100

seq1  TTTTTGGGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTCTCTC  150

seq1  CTGTATGAATTCTCTGATGAATATTAAGATGAAATTTGTGGGTAAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGAATTCTCTGATGAATATTAAGATGAAATTTGTGGGTAAAGCAT  200

seq1  TTGTCACATTCACTACATTTATAAATTTTCTCTTCTGCATGAATTCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACATTCACTACATTTATAAATTTTCTCTTCTGCATGAATTCCCTG  250

seq1  ATGGATACTAAGATCGATCTGATGGGTAAAGCATTTGTCACTTTTACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACTAAGATCGATCTGATGGGTAAAGCATTTGTCACTTTTACTAC  300

seq1  TTCTGTAATGTTTCTTTTCATGATAAATTCTCTGCTGACTTTGAAGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAATGTTTCTTTTCATGATAAATTCTCTGCTGACTTTGAAGTTTG  350

seq1  TCTCTCTGGGTAAGATATTTGTCAAATTTACTACATTTGTAAGGGTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGGGTAAGATATTTGTCAAATTTACTACATTTGTAAGGGTTCAC  400

seq1  TCCAGTATTATTTCGTTTCACCATGACTTTATGTTTAGAAATAAAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATTATTTCGTTTCACCATGACTTTATGTTTAGAAATAAAAGCCT  450

seq1  TCTCAGATTCTGCATTTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGATTCTGCATTTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCC  500

seq1  TGATTGAGACTAACGGTAGAAAACAAAGTTAAACTGTTTACAGAGTCATT  550
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGATTGAGACTAATGGTAGAAAACAAAGTTAAACTGTTTACAGAGTCATT  550

seq1  GTATTTGCAAACTTCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGTTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCAAACTTCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGTTCG  600

seq1  AAAATTGAAGAGCATCAGAGGTATGATTAGTTTTGTAAGGTGTACATTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGAAGAGCATCAGAGGTATGATTAGTTTTGTAAGGTGTACATTGG  650

seq1  GGGGCTTCAAGTATCACA-TTGCTAAGTTTGTCCCATTTAGAAGACTTCT  699
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGGGCTTCAAGTATCACATTTGCTAAGTTTGTCCCATTTAGAAGACTTCT  700

seq1  CTTGAATATTCATGTGTTCATGGACAATGTACTGGCTGTCTTGATCCAAG  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTGAATATTCATGTG-TCATGGACAATGTACTGGCTGTCTTGATCCAAG  749

seq1  ACCTTCTCATACTTTCC-ACATATGCAATGATTTTCTGAAAAAAAGTAGG  798
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  ACCTTCTCATACTTTCCAACATATGCAATGATTTTCTG-AAAAAAGTAGG  798

seq1  GAGGGGCAATTAGAGG-TGACATGAATTACTTATATAAGGAGTAAGTGAT  847
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GA-GGGCAATTAGAGGTTGACATGAATTACTTATATAAGGAGTAAGTGAT  847

seq1  TCAATAATCAGT-GATCTCATGGATTCGTACTC--TCAAG-AGAGGTTTT  893
      |||   |||||| ||||||||||||||||||||   |||| |||||||||
seq2  TCA--TATCAGTGGATCTCATGGATTCGTACTCCTCCAAGAAGAGGTTTT  895

seq1  TCTCCTTTTTTTGAATCATTACAT-GTATCCTCAAAAGAACTTCAAATAT  942
          || |||||| |||| ||||| |||||||| ||||||||||||||||
seq2  ----CTCTTTTTG-ATCAATACATGGTATCCTC-AAAGAACTTCAAATAT  939

seq1  GGTCTA-TATCAAATGATTGGAA  964
      |||||| ||||||   |||||||
seq2  GGTCTATTATCAATGAATTGGAA  962

seq1: chr4_145658619_145659755
seq2: B6Ng01-224I08.g_86_1202 (reverse)

seq1  AGTGCAAA--CTGAAAA--CAGCCAAGT-CAACCTTGTT--AAAATATT-  42
      ||||||||   ||||||   |||||||| ||||||||||  |||||||| 
seq2  AGTGCAAAACTTGAAAAACAAGCCAAGTCCAACCTTGTTTAAAAATATTC  50

seq1  CAGCTTTATTTAC-AGGGCAATGAGGAA--GGAGATGTTGA-CAGAGCAT  88
      | |||||  |||| |||||| |||||||   |||||||||| ||||||||
seq2  CGGCTTTTATTACAAGGGCATTGAGGAAAGAGAGATGTTGACCAGAGCAT  100

seq1  AAGGG-ACTCAT-AGTCA-GTCACTA-TCCTGAAACGTGAAACCAATAAA  134
       |||| |||||| ||||| ||||||| || ||||||||||||||||||||
seq2  TAGGGAACTCATAAGTCAGGTCACTATTCTTGAAACGTGAAACCAATAAA  150

seq1  TCATTTGTCAC-ATTGAC-GTGAT-AAGAAT--AATGAATACTGGAT-AC  178
      ||| ||||||| |||||| ||||| ||||||  |||||||||||||| ||
seq2  TCAATTGTCACAATTGACGGTGATAAAGAATTAAATGAATACTGGATAAC  200

seq1  TCAAAGCACACTTCACATCTGTAGGTGTATTATAGGA--TTAAGAACATG  226
      |||||||||||||||||||||||||  ||||||||||  | |||||||||
seq2  TCAAAGCACACTTCACATCTGTAGGCATATTATAGGAATTAAAGAACATG  250

seq1  CATTCTTGGT-GGCTCAGTTTGTCAAATACTCTA-TCAAGTATAATTTGT  274
      || ||||||| ||||||||||||||||||| ||| ||||||| ||| |||
seq2  CAGTCTTGGTGGGCTCAGTTTGTCAAATACACTATTCAAGTACAATCTGT  300

seq1  GTCAATTTCTTCATTTGAATTAAATATAC-AAAATGCTG-CCAGTTTTAT  322
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  GTCAATTTCTTCATTTGAATTAAATATACAAAAATGCTGCCCAGTTTTAT  350

seq1  TAGACATTTTGAAGGCGATAGTACACTCTTTA---AGTTTCCTTCTGGAA  369
      ||||||||||||||||||||||||||||||||   ||||||||| |||||
seq2  TAGACATTTTGAAGGCGATAGTACACTCTTTATTTAGTTTCCTTTTGGAA  400

seq1  TGGATCATTTCTATCTCCATGAATTGTTGCACAACATCATATTCTTCTGG  419
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCATTTCTATCTCCATGAATTGTTGCACAACATCATATTCTTCTGG  450

seq1  CTTTCACACCTGACTTCATCATATAATATTTGAGGGTG-AACAAGTAAAA  468
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTTCACACCTGACTTCATCATATAATATTTGAGGGTGAAACAAGTAAAA  500

seq1  GTTTAATGAAAATGTTTCTTCATTATCATATATTCAGAGTTACTGCCAGC  518
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATGAAAATGTTTCTTCATTATCATATATTCAGAGTTACTGCCAGC  550

seq1  ATAATAGTTGACATT-----AGATTTGAAGATTGCATGAAGGTTTTCAAA  563
      |||||||||||||||     ||||||||| ||||||||||||||||||||
seq2  ATAATAGTTGACATTATCTAAGATTTGAACATTGCATGAAGGTTTTCAAA  600

seq1  AGTTTTCAGATTCATAATAATTCTCTAGTTTAGAGCACTGACTGTTGAAA  613
      |||||||||||||   ||||||||||||||||||||||| ||||||||||
seq2  AGTTTTCAGATTC---ATAATTCTCTAGTTTAGAGCACTAACTGTTGAAA  647

seq1  AGAATATTACCCGTGTAAAACATATGCCACATTTCCCCAGGAGAACTATT  663
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTACCCGTGTAAAACATATGCCACATTTCCCCAGGAGAACTATT  697

seq1  TTTCCCATAAAAAATTTTTTTACATATTTTTTCTGCACTGAAATGAAGTC  713
      |||||||||||||| | |||||||||||||||||||||||||||||||||
seq2  TTTCCCATAAAAAA-TATTTTACATATTTTTTCTGCACTGAAATGAAGTC  746

seq1  AAAGATATTTCAGCATATATTATATTTGTTAAGATTCTTGCCTGTATAAA  763
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATTTCAGCATATATTATATTTGTTAAGATTCTTGCCTGTATAAA  796

seq1  TTATCTGTTACATTCTAAGAGATTGGCCAAAATAAAGGATTCAAACCGTC  813
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  TTATCTGTTACATTCTAAGAGATAGGCCAAAATAAAGGATTCAAACCATC  846

seq1  AATGTATTTGAAAAGTTTCCCTTTTGGAAGAATTCTCCAGTGAATTTTAA  863
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTTGAAAAGTTTCCCTTTTGGAAGAATTCTCCAGTGAATTTTAA  896

seq1  GATGATATTTCTTGTTAAAGGATTATCTCATTCATTTCATTTATAATGTT  913
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATATTTCTTGTTAAAGGATTATCTCATTCATTTCATTTATAATGTT  946

seq1  GCTCTACTGTTTGAAATATCTGTTGATTTGTCAGACTGATGTTGTGGGTA  963
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTCTACTGTTTGAAATATTTGTTGATTTGTCAGACTGATGTTGTGGGTA  996

seq1  CTGCATTTATCACATACAAAATACTTGTAAGG--TTTTTTTAAATGTATA  1011
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  CTGCATTTATCACATACAAAATACTTGTAAGGTTTTTTTTTAAATGTATA  1046

seq1  AATTATCTGATTAATTCTCAGTCTGCCTTTATTAGTAAAGCATTTATCAC  1061
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTGATTAATTCTCAGTCTGCCTTTATTAGTAAAGCATTTATCAC  1096

seq1  ATTCACTGCATTTTTGTAAGTTTTCTCTACTGTATGAATTCTCTGGTGCA  1111
      ||||||||||||||||||| |                             
seq2  ATTCACTGCATTTTTGTAAAT-----------------------------  1117

seq1  TTCTCAGACTAAGTTTGTGGGAAAAT  1137
                                
seq2  --------------------------  1117