BAC Information

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BAC

Clone NameB6Ng01-224L05
Chromosome4 (Build37)
Map Location 80,625,043 - 80,757,476
singlet/doubletdoublet
Overlap genenone
Upstream geneTyrp1, D4Bwg0951e
Downstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164, EG545641
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224L05.bB6Ng01-224L05.g
ACCGA039086GA039087
length1,010802
definitionB6Ng01-224L05.b B6Ng01-224L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,756,946 - 80,757,476)(80,625,043 - 80,625,843)
sequence
gaattccatgtcatttgaaaaagagaaccaggtaatgcaagaattccaga
ggagggcagcaaagctaagacagtgggaatgactcaggctgaaggaacag
agaaacccgttcaacaaagtgcttttcagatcctttctggcctggaggac
tcccctgttgtgatttgctttgctagaataagaatatgtggaatcacacc
caattaccagattctcttggtatttatttccatttgaaatgtgcatcgta
aggcacagggatgtggcatttgacttcaagaagtgatgctcggcttcaat
tgcttatacctggacaatataaattaaagtagactaacagttgcatccat
gattgtattgtttctccttgtttgtattttcataagggaatgatatgaag
ttatggctggcaagctaaaatgtgtgcttattggaatatactcattggtc
ggcatgattgggatgtttatactaataaatacaaaaggtttaagaataat
tgggcttttaaaaatatgtaatctatgttctaatttgttacaagagactg
gttggagttgggagcaaaagtgatggcaaagagaaaggggtgtcaggcct
gtgggaccatgctaccagacaggaagaagaactggtaaggctgagcaagc
tcaaacatggagaatctcagagatttgagaatggcaggaatagagccact
tcctatctctgtacttgctccagaacacacaaccaggagacacaactgag
agaaccatgggcagtcagtcacttagcatagcacctggaattcttcttca
tgctaatgaggcatctaggtagccctagccttcagccaatggccttcgat
cctggatattctcattcctttcccccaagatgtatagaatccctgggtta
ccctgagtaaagtgtgtgctccaacatccaccccaaataaaggcaatatg
aacaagcaaagggtcatctcagagagctacttcattaaagatcaccacag
gaagctcttt

gaattcaagacaatgattgtgagtatgttcaaacaaatcaaaaagagaac
aagctcccaactgagaacacaaatgactgcatgatagaaggaaggttaca
aaagtacaaaagaggaattcaatagatggaagtactaaagaaaaccctgc
tggaaggattgaaggagaagctccaggtgcctcagtcattgacaggagca
aatgacagttgacagttaagagaggcagagtcccttttctgcagggtggt
agccagtggtaggtggcctatgctatggtgaatgactcacaggcactgag
gggaataaaaagccatgacgttgagagggagatgggagataagttattgt
tgattaggtagctctaggtggtccattttaggtggtcagcttctgtcaag
gcttagagaacactaaaagagagagcaaaaagaaattaagagccagggta
tgtggatgtgtgctgtgaaatgctgtcttctggacaatgacatgatcata
tcactcccaaacccagaaaagctgtagtcatttgcttaaggcttgcacaa
gaccaagtcactcagtgttccaattcatgtgactccacccttagctgctg
gcagttaatggttactgggactcatttttcttcaggagtgagtatagtca
tttataaagttacccatgctcccataaaaaactcctccaccttcatgcta
ataacaagaagaaaaggacatgaaaggaagagtagaaatttaggaggaca
agttgatgtctggaaggagaaggaaatgggtacgataggggaaagaggtg
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_80756946_80757476
seq2: B6Ng01-224L05.b_47_577 (reverse)

seq1  AGAACATAGATTACATATTTTTAAAAGCCCAATTATTCTTAAACCTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATAGATTACATATTTTTAAAAGCCCAATTATTCTTAAACCTTTTG  50

seq1  TATTTATTAGTATAAACATCCCAATCATGCCGACCAATGAGTATATTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTAGTATAAACATCCCAATCATGCCGACCAATGAGTATATTCCA  100

seq1  ATAAGCACACATTTTAGCTTGCCAGCCATAACTTCATATCATTCCCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACACATTTTAGCTTGCCAGCCATAACTTCATATCATTCCCTTAT  150

seq1  GAAAATACAAACAAGGAGAAACAATACAATCATGGATGCAACTGTTAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACAAACAAGGAGAAACAATACAATCATGGATGCAACTGTTAGTC  200

seq1  TACTTTAATTTATATTGTCCAGGTATAAGCAATTGAAGCCGAGCATCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAATTTATATTGTCCAGGTATAAGCAATTGAAGCCGAGCATCACT  250

seq1  TCTTGAAGTCAAATGCCACATCCCTGTGCCTTACGATGCACATTTCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGTCAAATGCCACATCCCTGTGCCTTACGATGCACATTTCAAAT  300

seq1  GGAAATAAATACCAAGAGAATCTGGTAATTGGGTGTGATTCCACATATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAATACCAAGAGAATCTGGTAATTGGGTGTGATTCCACATATTC  350

seq1  TTATTCTAGCAAAGCAAATCACAACAGGGGAGTCCTCCAGGCCAGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAGCAAAGCAAATCACAACAGGGGAGTCCTCCAGGCCAGAAAGG  400

seq1  ATCTGAAAAGCACTTTGTTGAACGGGTTTCTCTGTTCCTTCAGCCTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAAGCACTTTGTTGAACGGGTTTCTCTGTTCCTTCAGCCTGAGT  450

seq1  CATTCCCACTGTCTTAGCTTTGCTGCCCTCCTCTGGAATTCTTGCATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCACTGTCTTAGCTTTGCTGCCCTCCTCTGGAATTCTTGCATTAC  500

seq1  CTGGTTCTCTTTTTCAAATGACATGGAATTC  531
      |||||||||||||||||||||||||||||||
seq2  CTGGTTCTCTTTTTCAAATGACATGGAATTC  531


seq1: chr4_80625043_80625843
seq2: B6Ng01-224L05.g_66_867

seq1  GAATTCAAGACAATGATTGTGAGTATGTTCAAACAAATCAAAAAGAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACAATGATTGTGAGTATGTTCAAACAAATCAAAAAGAGAAC  50

seq1  AAGCTCCCAACTGAGAACACAAATGACTGCATGATAGAAGGAAGGTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCCAACTGAGAACACAAATGACTGCATGATAGAAGGAAGGTTACA  100

seq1  AAAGTACAAAAGAGGAATTCAATAGATGGAAGTACTAAAGAAAACCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACAAAAGAGGAATTCAATAGATGGAAGTACTAAAGAAAACCCTGC  150

seq1  TGGAAGGATTGAAGGAGAAGCTCCAGGTGCCTCAGTCATTGACAGGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGATTGAAGGAGAAGCTCCAGGTGCCTCAGTCATTGACAGGAGCA  200

seq1  AATGACAGTTGACAGTTAAGAGAGGCAGAGTCCCTTTTCTGCAGGGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAGTTGACAGTTAAGAGAGGCAGAGTCCCTTTTCTGCAGGGTGGT  250

seq1  AGCCAGTGGTAGGTGGCCTATGCTATGGTGAATGACTCACAGGCACTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGGTAGGTGGCCTATGCTATGGTGAATGACTCACAGGCACTGAG  300

seq1  GGGAATAAAAAGCCATGACGTTGAGAGGGAGATGGGAGATAAGTTATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAAAAAGCCATGACGTTGAGAGGGAGATGGGAGATAAGTTATTGT  350

seq1  TGATTAGGTAGCTCTAGGTGGTCCATTTTAGGTGGTCAGCTTCTGTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGGTAGCTCTAGGTGGTCCATTTTAGGTGGTCAGCTTCTGTCAAG  400

seq1  GCTTAGAGAACACTAAAAGAGAGAGCAAAAAGAAATTAAGAGCCAGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAGAACACTAAAAGAGAGAGCAAAAAGAAATTAAGAGCCAGGGTA  450

seq1  TGTGGATGTGTGCTGTGAAATGCTGTCTTCTGGACAATGACATGATCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGTGTGCTGTGAAATGCTGTCTTCTGGACAATGACATGATCATA  500

seq1  TCACTCCCAAACCCAGAAAAGCTGTAGTCATTTGCTTAAGGCTTGCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCCAAACCCAGAAAAGCTGTAGTCATTTGCTTAAGGCTTGCACAA  550

seq1  GACCAAGTCACTCAGTGTTCCAATTCATGTGACTCCACCCTTAGCTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTCACTCAGTGTTCCAATTCATGTGACTCCACCCTTAGCTGCTG  600

seq1  GCAGTTAATGGTTACTGGGACTCATTTTTCTTCAGGAGTGAGTATAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAATGGTTACTGGGACTCATTTTTCTTCAGGAGTGAGTATAGTCA  650

seq1  TTTAT-AAGTTACCCATGCTCCCATAAAAAACTCCTCCACCTTCATGCTA  699
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAGTTACCCATGCTCCCATAAAAAACTCCTCCACCTTCATGCTA  700

seq1  ATAACAAGAAGAAAAGGACATGAAAGGAAGAGTAGAAATTTAGGAGGACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGAAGAAAAGGACATGAAAGGAAGAGTAGAAATTTAGGAGGACA  750

seq1  AGTTGATGTCTGGAAGGAGAAGGAAATGGGTACGATAGGGGAAAGAGGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATGTCTGGAAGGAGAAGGAAATGGGTACGATAGGGGAAAGAGGTG  800

seq1  GA  801
      ||
seq2  GA  802


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