BAC Information

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BAC

Clone NameB6Ng01-224O19
Chromosome4 (Build37)
Map Location 93,484,988 - 93,624,529
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224O19.bB6Ng01-224O19.g
ACCGA039251GA039252
length1,1381,069
definitionB6Ng01-224O19.b B6Ng01-224O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,623,400 - 93,624,529)(93,484,988 - 93,486,041)
sequence
gaattcagtaagaacttgggggattttcttttaggtggcaagacgaacaa
tacagagatgagctctgggattcaagagaacaggggatgaaatattatac
tgctaagcacaatgctgacacctatgcaaaaaaaagtgggaggcttcagg
ttcacatacatttggtctgattcagtagtcttagttttttctgtttgttg
tgcaatgtaaaacaggaacctgtgtgctttgccttggctgtgagcacaat
atttgcctctaagcaatcattgtgagatgcttgtttcaagcagacttccc
atgtgaccaatcatttttcatttccatacatgtgccttattgaatatctc
cctttctgtttatagtgtgacataaattgagacattaaattcccaatccc
ataacctgttacgtctctattgctttctagccatcttgtcctgaattcac
tcccttgattttcagagtcgctgcattcccagagagcagttcttcaatgc
agtccaggaagatttcctagaaggattgtactccccaaatccatggaatc
ccagggaaaatgtgtttactctagacatctatgtgagagaataaaccagg
tggctgctctgttatgccttcttaataaagttgtttaaaacaatcacagc
caaataaacaataccttaataggctaaatgtgacttcataacataaaaat
tcaaaaaagaaaaacatccagtggggtatctttaaaattaaactctcagt
gcccaactcattgcagtaatgtctactgtatttattgctgttcttgccat
aaagagatttcttattttgtattaataatacaaaaccctcagtaccacat
agaatattaaattctccccctattagttttatgggaaggggaacatagac
ccagagctgagagaagtctgctagggtcattgaaggtggcccctcaaagt
tcacaaagttttcttattgttgtccagtagatcatctatgcctcctcctc
ttatacgcgttctcacgaccgggccaggaaagaaacacaacaaaccaaga
atctttctggcggcaacctttatttgcttacatcttcagggagccaggga
ggcgcaacccccaggccccaaaagcgaaggcacccctt

gaattcatttctcatggtcacatctatagcctccccattcaaacacaggg
ataaaaactcaatgctttgtagaaagaaaagctgaagcagttgtaggatt
tcaatagaatgtttgatgctcctgtaacatgtgacaaaacacctgcagaa
gagccctttcagggaagaacatgttagacacaggcagcagggataaacga
agaaggatgcttgacatgttcaagaaaattggtgtatagcagaacaatat
gagcaagaaaaagaactttaggggatggagggagagatgtcatagagaga
cacatcctatagtgtctcacaaaggtctaaaaagcactgcttaaaatcat
attgataatcatatgaagaatgtgggaagtattatctattggggtgttgg
gttattaagttacacactaaacttgtctttcagaagaattactttggttg
ccaggttgaaaataacctttaaaaagtgggccaagagggaaagcagggat
aacaattgattaatgaagaccctttgcaatcaatcttctagataggtgac
tatgggcataatgttttgtatgctgtataatgtttatccttaggttattt
aaatgctgatttctctacccttatatcttgggatgtatcatgggatgggg
ctgggaggtagccagattagcgtaaagaaaagacagatcatttaattgct
cagctattgagatgtagtttttaaataaatctttgtttctctgtgaattt
attggggactaccataacatgaagaaatacagctgttggatttaattcac
tgtttatatttatattaagaataattcattctcaggtgacaacaatgact
tagacaaatggtttagatattctgaaagaaaagaatatgtgagcagagaa
tacattgaggatataccctggaagtttcaggtcccataagaaaatgactc
aatgcctctggattctcccttagccctctagcttctaggtaattacagaa
acagaacagacaggtgggcatggaccttttcctcccggaactggcttgaa
ggtcgtataaacatcatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93623400_93624529
seq2: B6Ng01-224O19.b_48_1185 (reverse)

seq1  AAGGGGTGGCTTTCGCTTTTGGGGCTGGGGGTTTGCGC--TCCTGGCT-C  47
      ||||||| || ||||||||||||||  |||| ||||||   ||||||| |
seq2  AAGGGGT-GCCTTCGCTTTTGGGGCCTGGGGGTTGCGCCTCCCTGGCTCC  49

seq1  CTGAAGATGTAAGC-AATAAAGTTTTGCCG-CAG-AAGATTC-TGGTTTG  93
      |||||||||||||| |||||||  |||||| ||| ||||||| |||||||
seq2  CTGAAGATGTAAGCAAATAAAG-GTTGCCGCCAGAAAGATTCTTGGTTTG  98

seq1  TTGTG-TTCTTTCCTGG-CCGGTCGTGAGAACGCGTATAAGAG--AGAGG  139
      ||||| ||||||||||| |||||||||||||||||||||||||   ||||
seq2  TTGTGTTTCTTTCCTGGCCCGGTCGTGAGAACGCGTATAAGAGGAGGAGG  148

seq1  CATAGATGATCTACTGGACAACAATAAGAAAACTTTGTGAACTTTGAGGG  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGATCTACTGGACAACAATAAGAAAACTTTGTGAACTTTGAGGG  198

seq1  GCCACCCTTCAATGACCCTAGCAGACTTCTCTCAGCTCTGGGTCTATGTT  239
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCA-CCTTCAATGACCCTAGCAGACTTCTCTCAGCTCTGGGTCTATGTT  247

seq1  CCCCTTCCCATAAAACTAATAGGGGGAGAATTTAATATTCTATGTGGTAC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCCATAAAACTAATAGGGGGAGAATTTAATATTCTATGTGGTAC  297

seq1  TGAGGGTTTTGTATTATTAATACAAAATAAGAAATCTCTTTATGGCAAGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTTTTGTATTATTAATACAAAATAAGAAATCTCTTTATGGCAAGA  347

seq1  ACAGCAATAAATACAGTAGACATTACTGCAATGAGTTGGGCACTGAGAGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATAAATACAGTAGACATTACTGCAATGAGTTGGGCACTGAGAGT  397

seq1  TTAATTTTAAAGATACCCCACTGGATGTTTTTCTTTTTTGAATTTTTATG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTAAAGATACCCCACTGGATGTTTTTCTTTTTTGAATTTTTATG  447

seq1  TTATGAAGTCACATTTAGCCTATTAAGGTATTGTTTATTTGGCTGTGATT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTCACATTTAGCCTATTAAGGTATTGTTTATTTGGCTGTGATT  497

seq1  GTTTTAAACAACTTTATTAAGAAGGCATAACAGAGCAGCCACCTGGTTTA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAACAACTTTATTAAGAAGGCATAACAGAGCAGCCACCTGGTTTA  547

seq1  TTCTCTCACATAGATGTCTAGAGTAAACACATTTTCCCTGGGATTCCATG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCACATAGATGTCTAGAGTAAACACATTTTCCCTGGGATTCCATG  597

seq1  GATTTGGGGAGTACAATCCTTCTAGGAAATCTTCCTGGACTGCATTGAAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGGGAGTACAATCCTTCTAGGAAATCTTCCTGGACTGCATTGAAG  647

seq1  AACTGCTCTCTGGGAATGCAGCGACTCTGAAAATCAAGGGAGTGAATTCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCTCTGGGAATGCAGCGACTCTGAAAATCAAGGGAGTGAATTCA  697

seq1  GGACAAGATGGCTAGAAAGCAATAGAGACGTAACAGGTTATGGGATTGGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGATGGCTAGAAAGCAATAGAGACGTAACAGGTTATGGGATTGGG  747

seq1  AATTTAATGTCTCAATTTATGTCACACTATAAACAGAAAGGGAGATATTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATGTCTCAATTTATGTCACACTATAAACAGAAAGGGAGATATTC  797

seq1  AATAAGGCACATGTATGGAAATGAAAAATGATTGGTCACATGGGAAGTCT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGCACATGTATGGAAATGAAAAATGATTGGTCACATGGGAAGTCT  847

seq1  GCTTGAAACAAGCATCTCACAATGATTGCTTAGAGGCAAATATTGTGCTC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAACAAGCATCTCACAATGATTGCTTAGAGGCAAATATTGTGCTC  897

seq1  ACAGCCAAGGCAAAGCACACAGGTTCCTGTTTTACATTGCACAACAAACA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAGGCAAAGCACACAGGTTCCTGTTTTACATTGCACAACAAACA  947

seq1  GAAAAAACTAAGACTACTGAATCAGACCAAATGTATGTGAACCTGAAGCC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACTAAGACTACTGAATCAGACCAAATGTATGTGAACCTGAAGCC  997

seq1  TCCCACTTTTTTTTGCATAGGTGTCAGCATTGTGCTTAGCAGTATAATAT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTTTTTTTGCATAGGTGTCAGCATTGTGCTTAGCAGTATAATAT  1047

seq1  TTCATCCCCTGTTCTCTTGAATCCCAGAGCTCATCTCTGTATTGTTCGTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCCCTGTTCTCTTGAATCCCAGAGCTCATCTCTGTATTGTTCGTC  1097

seq1  TTGCCACCTAAAAGAAAATCCCCCAAGTTCTTACTGAATTC  1130
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACCTAAAAGAAAATCCCCCAAGTTCTTACTGAATTC  1138


seq1: chr4_93484988_93486041
seq2: B6Ng01-224O19.g_70_1138

seq1  GAATTCATTTCTCATGGTCACATCTATAGCCTCCCCATTCAAACACAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTCATGGTCACATCTATAGCCTCCCCATTCAAACACAGGG  50

seq1  ATAAAAACTCAATGCTTTGTAGAAAGAAAAGCTGAAGCAGTTGTAGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACTCAATGCTTTGTAGAAAGAAAAGCTGAAGCAGTTGTAGGATT  100

seq1  TCAATAGAATGTTTGATGCTCCTGTAACATGTGACAAAACACCTGCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGAATGTTTGATGCTCCTGTAACATGTGACAAAACACCTGCAGAA  150

seq1  GAGCCCTTTCAGGGAAGAACATGTTAGACACAGGCAGCAGGGATAAACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTTCAGGGAAGAACATGTTAGACACAGGCAGCAGGGATAAACGA  200

seq1  AGAAGGATGCTTGACATGTTCAAGAAAATTGGTGTATAGCAGAACAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATGCTTGACATGTTCAAGAAAATTGGTGTATAGCAGAACAATAT  250

seq1  GAGCAAGAAAAAGAACTTTAGGGGATGGAGGGAGAGATGTCATAGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGAAAAAGAACTTTAGGGGATGGAGGGAGAGATGTCATAGAGAGA  300

seq1  CACATCCTATAGTGTCTCACAAAGGTCTAAAAAGCACTGCTTAAAATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTATAGTGTCTCACAAAGGTCTAAAAAGCACTGCTTAAAATCAT  350

seq1  ATTGATAATCATATGAAGAATGTGGGAAGTATTATCTATTGGGGTGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAATCATATGAAGAATGTGGGAAGTATTATCTATTGGGGTGTTGG  400

seq1  GTTATTAAGTTACACACTAAACTTGTCTTTCAGAAGAATTACTTTGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAAGTTACACACTAAACTTGTCTTTCAGAAGAATTACTTTGGTTG  450

seq1  CCAGGTTGAAAATAACCTTTAAAAAGTGGGCCAAGAGGGAAAGCAGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGAAAATAACCTTTAAAAAGTGGGCCAAGAGGGAAAGCAGGGAT  500

seq1  AACAATTGATTAATGAAGACCCTTTGCAATCAATCTTCTAGATAGGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTGATTAATGAAGACCCTTTGCAATCAATCTTCTAGATAGGTGAC  550

seq1  TATGGGCATAATGTTTTGTATGCTGTATAATGTTTATCCTTAGGTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCATAATGTTTTGTATGCTGTATAATGTTTATCCTTAGGTTATTT  600

seq1  AAATGCTGATTTCTCTACCCTTATATCTTGGGATGTATCATGGGATGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGATTTCTCTACCCTTATATCTTGGGATGTATCATGGGATGGGG  650

seq1  CTGGGAGGTAGCCAGATTAGCGTAAAGAAAAGACAGATCATTTAATTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGTAGCCAGATTAGCGTAAAGAAAAGACAGATCATTTAATTGCT  700

seq1  CAGCTATTGAGATGTAG-TTTTAAATAAATCTTTGTTTCTCTGTGAATTT  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGCTATTGAGATGTAGTTTTTAAATAAATCTTTGTTTCTCTGTGAATTT  750

seq1  ATTGGGGACTACCATAACATGAAGAAATACAGCTGTTGGA-TTAATTCAC  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTGGGGACTACCATAACATGAAGAAATACAGCTGTTGGATTTAATTCAC  800

seq1  TGTTTATATTTATATTAAGAATAATTCATTCTCAGGTGACAACAATGACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATATTTATATTAAGAATAATTCATTCTCAGGTGACAACAATGACT  850

seq1  TAGACAAAT-GTTTAGA-ATTCTGAAAGAAAAGAATATGTGAGCAGAGAA  896
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  TAGACAAATGGTTTAGATATTCTGAAAGAAAAGAATATGTGAGCAGAGAA  900

seq1  TACATTGAGGATATACCCT-GAAGTTTCAGGT-CCAT-AGAAAATGACTC  943
      ||||||||||||||||||| |||||||||||| |||| ||||||||||||
seq2  TACATTGAGGATATACCCTGGAAGTTTCAGGTCCCATAAGAAAATGACTC  950

seq1  AATG-CTCT-GATTCTCCCTTTAAGCCCTCTAGC-TCTAGGT-ATTACAG  989
      |||| |||| |||||||||||  ||||||||||| ||||||| |||||||
seq2  AATGCCTCTGGATTCTCCCTT--AGCCCTCTAGCTTCTAGGTAATTACAG  998

seq1  -AACAGAACAGACA-GTTGGCATGG--CCTTTCCTCCCGGAACTGGC-TG  1034
       ||||||||||||| || |||||||  | |||||||||||||||||| ||
seq2  AAACAGAACAGACAGGTGGGCATGGACCTTTTCCTCCCGGAACTGGCTTG  1048

seq1  AAGTCTGTAT-AACATCATCC  1054
      |||   |||| ||||||||||
seq2  AAGGTCGTATAAACATCATCC  1069


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