BAC Information

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BAC

Clone NameB6Ng01-225K02
Chromosome4 (Build37)
Map Location 112,196,915 - 112,401,202
singlet/doubletdoublet
Overlap geneLOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik
Upstream geneSpata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik
Downstream geneLOC433745, LOC545668, LOC230622, LOC100040607, LOC242627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225K02.bB6Ng01-225K02.g
ACCGA039775GA039776
length1,018797
definitionB6Ng01-225K02.b B6Ng01-225K02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,196,915 - 112,197,866)(112,400,417 - 112,401,202)
sequence
gaattctcatagtgggtactactttgtatttggtaagacattaataagat
acttgactaagaaaacaaaataaaaaaccacctacatgaatctaaaaaaa
ataaataaaaaaaaataaaactagaaaagaaaatttaatttcactcagat
tgcagtgatagaacaagtatgtcttcccaatagcagtacagatcttgaca
ctatatggatatgacaaaaagctaggtagagttgaaaggttttgcaaagc
tcattgcatctcctacataccaaaaaagttggttcataccagggtttggc
agacaccctgtgtttggtgtaagatgaacataggaatccaccaactcaga
aaaaatgagccagagaccaaaataaaaaaaaattctaagttaataattgg
atcttcgtacatcatcacttctcaccatcttttcattgctatctaagtct
gaattaaagacaccgtcaataagacaaaaagaccaccaacagattgagaa
aggatctttacctatcccaaattagacagggaactaatatccaatatata
taaaaaactcaagaaggtagactccataaaatcaaataatcccattaaaa
aatggggctcagaactgaacaaagatttctcacccgaggaataccgaatg
gcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaat
gcaaatcaaaacaaccctgagattccacctcataccagtcagaatggcta
agatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaaga
ggaacgctcctccattgttggtgggattgcaagcttgtacaaccactctg
gaaatcagtctgggggttcctcagaaaattggacatagtactaccggaag
atccagcaatacctcttctgggcatatatccagaagatgccccaactggt
aagaaggaaacatgctccactatgttcatagcagccttatttttatagcc
agaagctgggaaagaacc

gaattcattcagatgattccttactggataaatgcagcttcttcctcctt
tagctagttcaaagtttcatggaaacccttctctatggatactacaatct
tcaagcatttaaaaatggaggcaaggctatagtggacagggtcccacact
gttgcgaatagccctagaactaaatatatttgatgtttattccattctct
tgtgagttgttataaacaaggaataagtcagcactcatgcgatttatttt
aaacctgcttcccatcttaatttgtaaaataaagaagagatgattattgg
gcagctaagagggaaggtggagcagaaggtggggagagagaagaaggaga
aaatagaagagggagaggatgcagaggaggaggaagaaaaacagagcaga
agcacacggcctggagaaactacaagttctaagcggtctcaaagatggag
aagatgttagtgtatcagtatacctgcccaatataggtgcacagcatgta
ttaatattaattgctggggcatatttgggttggagattgaccacaacacc
acatcatccaaaccctgttttcaggttgattatgtgctttacagtttgtg
aaaaaaaagcaagaaggtattattttgatgttgtagttaagtctgttctg
tttttcagactaaaatgaccataatcttagcttcaccaaaattctaagtt
ctatcttcccctaaaagttctttacataatcctaaatatctttgcttatg
aagactttagccccagcaataacttgttattaagtaattggatatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_112196915_112197866
seq2: B6Ng01-225K02.b_46_997

seq1  GAATTCTCATAGTGGGTACTACTTTGTATTTGGTAAGACATTAATAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAGTGGGTACTACTTTGTATTTGGTAAGACATTAATAAGAT  50

seq1  ACTTGACTAAGAAAACAAAATAAAAAACCACCTACATGAATCTAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACTAAGAAAACAAAATAAAAAACCACCTACATGAATCTAAAAAAA  100

seq1  ATAAATAAAAAAAAATAAAACTAGAAAAGAAAATTTAATTTCACTCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAAAAAAATAAAACTAGAAAAGAAAATTTAATTTCACTCAGAT  150

seq1  TGCAGTGATAGAACAAGTATGTCTTCCCAATAGCAGTACAGATCTTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGATAGAACAAGTATGTCTTCCCAATAGCAGTACAGATCTTGACA  200

seq1  CTATATGGATATGACAAAAAGCTAGGTAGAGTTGAAAGGTTTTGCAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGGATATGACAAAAAGCTAGGTAGAGTTGAAAGGTTTTGCAAAGC  250

seq1  TCATTGCATCTCCTACATACCAAAAAAGTTGGTTCATACCAGGGTTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCATCTCCTACATACCAAAAAAGTTGGTTCATACCAGGGTTTGGC  300

seq1  AGACACCCTGTGTTTGGTGTAAGATGAACATAGGAATCCACCAACTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCTGTGTTTGGTGTAAGATGAACATAGGAATCCACCAACTCAGA  350

seq1  AAAAATGAGCCAGAGACCAAAATAAAAAAAAATTCTAAGTTAATAATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAGCCAGAGACCAAAATAAAAAAAAATTCTAAGTTAATAATTGG  400

seq1  ATCTTCGTACATCATCACTTCTCACCATCTTTTCATTGCTATCTAAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCGTACATCATCACTTCTCACCATCTTTTCATTGCTATCTAAGTCT  450

seq1  GAATTAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGAGAA  500

seq1  AGGATCTTTACCTATCCCAAATTAGACAGGGAACTAATATCCAATATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTTACCTATCCCAAATTAGACAGGGAACTAATATCCAATATATA  550

seq1  TAAAAAACTCAAGAAGGTAGACTCCATAAAATCAAATAATCCCATTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACTCAAGAAGGTAGACTCCATAAAATCAAATAATCCCATTAAAA  600

seq1  AATGGGGCTCAGAACTGAACAAAGATTTCTCACCCGAGGAATACCGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGCTCAGAACTGAACAAAGATTTCTCACCCGAGGAATACCGAATG  650

seq1  GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT  700

seq1  GCAAATCAAAACAACCCTGAGATTCCACCTCATACCAGTCAGAATGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCAAAACAACCCTGAGATTCCACCTCATACCAGTCAGAATGGCTA  750

seq1  AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA  800

seq1  GGAACGCTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGCTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTG  850

seq1  GAAATCAGTCTGGGGGTTCCTCAGAAAATTGGACATAGTACTACCGGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGTCTGGGGGTTCCTCAGAAAATTGGACATAGTACTACCGGAAG  900

seq1  ATCCAGCAATACCTCTTCTGGGCATATATCCAGAAGATGCCCCAACTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCAATACCTCTTCTGGGCATATATCCAGAAGATGCCCCAACTGGT  950

seq1  AA  952
      ||
seq2  AA  952


seq1: chr4_112400417_112401202
seq2: B6Ng01-225K02.g_66_862 (reverse)

seq1  CTATATCCATTTACTTA--TACAAGTT-TTGCTGGGGCTAAAGTC-TCAT  46
      ||||||||| |||||||   ||||||| ||||||||||||||||| ||||
seq2  CTATATCCAATTACTTAATAACAAGTTATTGCTGGGGCTAAAGTCTTCAT  50

seq1  AAGC-AAGATATTTAGGATTATGTAAAGAACTTTTA-GGGAAGATAGAAC  94
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGCAAAGATATTTAGGATTATGTAAAGAACTTTTAGGGGAAGATAGAAC  100

seq1  TTAGAA-TTTGGTGAAGCTAAGATTATGGTCA-TTTAGTCTG-AAGACAG  141
      |||||| ||||||||||||||||||||||||| ||||||||| || ||||
seq2  TTAGAATTTTGGTGAAGCTAAGATTATGGTCATTTTAGTCTGAAAAACAG  150

seq1  AACAGACTTAACTACAACATC-AAATAATACCTTCTTGCTTTTTTTTCAC  190
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACAGACTTAACTACAACATCAAAATAATACCTTCTTGCTTTTTTTTCAC  200

seq1  -AACTGTAAAGCACATAATCAACCTGAAAACAGGGTTTGGATGATGTGGT  239
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTAAAGCACATAATCAACCTGAAAACAGGGTTTGGATGATGTGGT  250

seq1  GTTGTGGTCAATCTCCAACCCAAATATGCCCCAGCAATTAATATTAATAC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTCAATCTCCAACCCAAATATGCCCCAGCAATTAATATTAATAC  300

seq1  ATGCTGTGCACCTATATTGGGCAGGTATACTGATACACTAACATCTTCTC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGCACCTATATTGGGCAGGTATACTGATACACTAACATCTTCTC  350

seq1  CATCTTTGAGACCGCTTAGAACTTGTAGTTTCTCCAGGCCGTGTGCTTCT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGAGACCGCTTAGAACTTGTAGTTTCTCCAGGCCGTGTGCTTCT  400

seq1  GCTCTGTTTTTCTTCCTCCTCCTCTGCATCCTCTCCCTCTTCTATTTTCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTTTTCTTCCTCCTCCTCTGCATCCTCTCCCTCTTCTATTTTCT  450

seq1  CCTTCTTCTCTCTCCCCACCTTCTGCTCCACCTTCCCTCTTAGCTGCCCA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCTCTCTCCCCACCTTCTGCTCCACCTTCCCTCTTAGCTGCCCA  500

seq1  ATAATCATCTCTTCTTTATTTTACAAATTAAGATGGGAAGCAGGTTTAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATCTCTTCTTTATTTTACAAATTAAGATGGGAAGCAGGTTTAAA  550

seq1  ATAAATCGCATGAGTGCTGACTTATTCCTTGTTTATAACAACTCACAAGA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCGCATGAGTGCTGACTTATTCCTTGTTTATAACAACTCACAAGA  600

seq1  GAATGGAATAAACATCAAATATATTTAGTTCTAGGGCTATTCGCAACAGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAATAAACATCAAATATATTTAGTTCTAGGGCTATTCGCAACAGT  650

seq1  GTGGGACCCTGTCCACTATAGCCTTGCCTCCATTTTTAAATGCTTGAAGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACCCTGTCCACTATAGCCTTGCCTCCATTTTTAAATGCTTGAAGA  700

seq1  TTGTAGTATCCATAGAGAAGGGTTTCCATGAAACTTTGAACTAGCTAAAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTATCCATAGAGAAGGGTTTCCATGAAACTTTGAACTAGCTAAAG  750

seq1  GAGGAAGAAGCTGCATTTATCCAGTAAGGAATCATCTGAATGAATTC  786
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAAGCTGCATTTATCCAGTAAGGAATCATCTGAATGAATTC  797


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