BAC Information

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BAC

Clone NameB6Ng01-225K13
Chromosome4 (Build37)
Map Location 116,204,911 - 116,206,095
singlet/doubletsinglet
Overlap geneIpp
Upstream geneCyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400
Downstream geneTmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225K13.bB6Ng01-225K13.g
ACCGA039797GA039798
length1,1891,172
definitionB6Ng01-225K13.b B6Ng01-225K13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtggtattttttgaaagattttgtcttttaatgtttgtctgga
ctttgttggaattttttattactattttatttatttgcatttcaaatact
gtctctctttccagtctcccctccacaaactcccctcccacccctctttt
gcctccaagagggtactcccctccccccaccaacccagcctcaggcctct
agcatatcctcctttgatgggtcaacaagccttcacaggaccaagccgca
acccccacaccccccacacacacactgaggccagataagacaatcctttg
ctataaatgtagcaggagctatggacccactcatgtatactctttggttg
gtggtttagtccctgggagctgtgaggggtccggttagttgatattgttc
ttcctatggggttgcaaatccattcagctccatcagtctttttctatctc
ttccactggggtccctgggctcagtccaatggttggctgtgagtgtttgc
atctatcttagtcaggtgctggcagattttctcaaagaacagccctactg
gtctcctatctgcaagcagttcttggcatcagcaataacgtctgggtttg
gtgtctgtagatgggatacatccaatcccaaggtgtgcggtgatctctgg
atggcttttccttcagcctctgctcctttttttttttttttttgtccctg
cttttccatgtatgtccttttgggtctggattacctcactcaggatgata
ttttcttgttccatccctttgctgacaaaatttgtgaagttgttgttttt
aagagctaagtagtattccattgtgtaaatgtatcacattttctgtatcc
attcatctgggttctttccagcttctggctatcatgaataggctgctata
acacagtagagcatatgtccttgttatatgttggagcttatttttggata
tatgaccagcagtggtatagctgggtcttttaggtagaactattttccaa
ttttctgaggaccacaaattgactttcagagtggttgtaccagcttgcat
cccacagcaatggagggagcgttctctcacaatccttcagcatctggctg
tccctggatttttgatctagtcaatctgattgggggtaggtggaattcag
gtcatttggattgcattccttggtagacctaaggatgag
gaattcttactgctcttacagatgtcccagttttaatacctagcagccac
aattggcaccccacaactgcctgttcacatacataaaaattaataaagtt
ttaaaaattaaaacactatcaaatatgtaggatgcagttaaagtagtatc
taaagaaaatttatagggctggcaatataagagcatttgcatacacaaac
cattaaaattttaaaacattttaaattactttatgttattagtgttgtgc
cttcttgtatgtcttacatgatgtgtgtgtgtgctgcccaaggaagcaaa
aagaggatgttggatgccctggaactggcgttatagacagttgtgagctg
gaaactaaacctgggtcatccctgcaagagcagccattggttttagctgc
ttagcaatatctctactctataccaaaacttaaaaatacatttatagata
taaatgataaaaaactgaagttttataatctgacatctcagtttctgatt
taacaaatgagaaaagggcaaaaatccataatacacatgcaagaaaaaat
aaaaatagaaataatagacaagtgatgcataaagtttgttctttaaaaag
agaaaactaataatcaaaacaatgagtgaaagagaacagcacatcacttc
agatgtaacaggtagtgacagagaataagaaaacactaagcattcgaaat
catgcaacccacctcttcgaaggagtacttttctacagtatgaagggcat
cttgtgtctcattccaccctccaatagcatagatgcagtcattgagtgct
gccaccccaagatacgctcttctggttcccataggaggaagtggagacca
gcgcttggaaagtggatcataaacctcaaaggaacggagctctagcccct
cattgctgattcctccaactgcataaattaaacctgaaaaagaacagatt
tgtgctcagtttctactgaacaggtacaggctaaccgtggcgcacaagcc
tctgacccagcacgcaggagcagagcagccagaccagcctgatgtacata
gtgagttcagacaacagctagagctacatagtggaagacctttcataaaa
ataaccaccaacaacaactgtactcctctactatgaagaataccttagct
gtaatgtggagagaaagtgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_116204911_116206095
seq2: B6Ng01-225K13.g_66_1237 (reverse)

seq1  TGTCACTTCCTCT-CACATCACAGCTAAGTTATTCTTCATAAGTAGGGAG  49
      |||||||| |||| ||||| ||||||||| |||||||||| ||||| |  
seq2  TGTCACTTTCTCTCCACATTACAGCTAAGGTATTCTTCAT-AGTAGAG--  47

seq1  AAAGTACAGTTTGTTTGTTTGTTTGTTTAATTTTTTATGACAGGGTCT--  97
        |||||||||   ||||| |  || |||  ||||||||| | |||||  
seq2  -GAGTACAGTT--GTTGTTGG--TGGTTA--TTTTTATGA-AAGGTCTTC  89

seq1  CACTATGTAGCTCTAGCTGTTGTCCTGAAACTCACTATGTACATCAGGCT  147
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  CACTATGTAGCTCTAGCTGTTGT-CTG-AACTCACTATGTACATCAGGCT  137

seq1  GGTCTGGCTGCTTCTGCCTCCTGCGTGCTGGGTCAGAGGCTTGTGCCGCC  197
      ||||||||||| |||| |||||||||||||||||||||||||||| ||||
seq2  GGTCTGGCTGC-TCTG-CTCCTGCGTGCTGGGTCAGAGGCTTGTG-CGCC  184

seq1  ACGGTTAGCCTGTACCTGTTCAGTAGAAACTGAGCACAAATCTGTTCTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTAGCCTGTACCTGTTCAGTAGAAACTGAGCACAAATCTGTTCTTT  234

seq1  TTCAGGTTTAATTTATGCAGTTGGAGGAATCAGCAATGAGGGGCTAGAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTTTAATTTATGCAGTTGGAGGAATCAGCAATGAGGGGCTAGAGC  284

seq1  TCCGTTCCTTTGAGGTTTATGATCCACTTTCCAAGCGCTGGTCTCCACTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTCCTTTGAGGTTTATGATCCACTTTCCAAGCGCTGGTCTCCACTT  334

seq1  CCTCCTATGGGAACCAGAAGAGCGTATCTTGGGGTGGCAGCACTCAATGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTATGGGAACCAGAAGAGCGTATCTTGGGGTGGCAGCACTCAATGA  384

seq1  CTGCATCTATGCTATTGGAGGGTGGAATGAGACACAAGATGCCCTTCATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTATGCTATTGGAGGGTGGAATGAGACACAAGATGCCCTTCATA  434

seq1  CTGTAGAAAAGTACTCCTTCGAAGAGGTGGGTTGCATGATTTCGAATGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAAAGTACTCCTTCGAAGAGGTGGGTTGCATGATTTCGAATGCT  484

seq1  TAGTGTTTTCTTATTCTCTGTCACTACCTGTTACATCTGAAGTGATGTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTTTCTTATTCTCTGTCACTACCTGTTACATCTGAAGTGATGTGC  534

seq1  TGTTCTCTTTCACTCATTGTTTTGATTATTAGTTTTCTCTTTTTAAAGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTTTCACTCATTGTTTTGATTATTAGTTTTCTCTTTTTAAAGAA  584

seq1  CAAACTTTATGCATCACTTGTCTATTATTTCTATTTTTATTTTTTCTTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTATGCATCACTTGTCTATTATTTCTATTTTTATTTTTTCTTGC  634

seq1  ATGTGTATTATGGATTTTTGCCCTTTTCTCATTTGTTAAATCAGAAACTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATTATGGATTTTTGCCCTTTTCTCATTTGTTAAATCAGAAACTG  684

seq1  AGATGTCAGATTATAAAACTTCAGTTTTTTATCATTTATATCTATAAATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCAGATTATAAAACTTCAGTTTTTTATCATTTATATCTATAAATG  734

seq1  TATTTTTAAGTTTTGGTATAGAGTAGAGATATTGCTAAGCAGCTAAAACC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAGTTTTGGTATAGAGTAGAGATATTGCTAAGCAGCTAAAACC  784

seq1  AATGGCTGCTCTTGCAGGGATGACCCAGGTTTAGTTTCCAGCTCACAACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGCTCTTGCAGGGATGACCCAGGTTTAGTTTCCAGCTCACAACT  834

seq1  GTCTATAACGCCAGTTCCAGGGCATCCAACATCCTCTTTTTGCTTCCTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATAACGCCAGTTCCAGGGCATCCAACATCCTCTTTTTGCTTCCTTG  884

seq1  GGCAGCACACACACACATCATGTAAGACATACAAGAAGGCACAACACTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCACACACACACATCATGTAAGACATACAAGAAGGCACAACACTAA  934

seq1  TAACATAAAGTAATTTAAAATGTTTTAAAATTTTAATGGTTTGTGTATGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAAAGTAATTTAAAATGTTTTAAAATTTTAATGGTTTGTGTATGC  984

seq1  AAATGCTCTTATATTGCCAGCCCTATAAATTTTCTTTAGATACTACTTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCTTATATTGCCAGCCCTATAAATTTTCTTTAGATACTACTTTA  1034

seq1  ACTGCATCCTACATATTTGATAGTGTTTTAATTTTTAAAACTTTATTAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATCCTACATATTTGATAGTGTTTTAATTTTTAAAACTTTATTAAT  1084

seq1  TTTTATGTATGTGAACAGGCAGTTGTGGGGTGCCAATTGTGGCTGCTAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTATGTGAACAGGCAGTTGTGGGGTGCCAATTGTGGCTGCTAGG  1134

seq1  TATTAAAACTGGGACATCTGTAAGAGCAGTAAGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAACTGGGACATCTGTAAGAGCAGTAAGAATTC  1172