BAC Information

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BAC

Clone NameB6Ng01-225N05
Chromosome4 (Build37)
Map Location 86,217,571 - 86,341,145
singlet/doubletdoublet
Overlap geneRraga, 6230416J20Rik, LOC100040388, Adfp
Upstream geneA930009N24, LOC668052, Adamtsl1, 4930500O09Rik
Downstream geneEG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225N05.bB6Ng01-225N05.g
ACCGA039921GA039922
length1,1351,054
definitionB6Ng01-225N05.b B6Ng01-225N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,217,571 - 86,218,693)(86,340,085 - 86,341,145)
sequence
gaattcaacagagggagaaaggttgaagaaaaactgatctcaaatctgga
agtgaaaaagcataatagatcaaataaactctgtggaaagaatcagcaag
aatggacgggggatggggaggacagaatatcttgaagacaagatggagaa
agcagaacaaaatctaacaaagacaaagaaaaaaaataagaagactccaa
tggcaattccaatatacatatgacatttggaaaaggccaaatttgttaga
ttatcagcattgaagaaacagaagaatctcattctagagacatgaaaagt
gttttcaagggaaccaagcaggaaaaaaaaaatcccagatttaggaaagg
agatgccagtccagacacacaaggcatttacaacaccacacagacagatc
agaaaagagactcctctcaccatatgacaactaaactacttgggactggg
agttcaggagttatcagttgtagctggccttctggttattttagtgggat
ctttttcttaccatctttctttaccccaatcccttccaaccccccaacta
gaaaacaaaaatcctcactacaattagtattcctcattcctctagaggag
tcaagtttggtttccagcacctagctaaggtggctctccactgcctgtaa
ccttggttcagaattcagtgccttctctgatgcacaagtggtgtacactc
acacagatggacaggcagacacacacacacacacacacacacacacacac
acacatctgacaaaattaaaacactaaatgttcagaacaaaggctattga
actttcagatctgtgcttacttgggagtacatgtcaaactcaggaagcta
aaaagggccatgtaggggtgagggctcttcatgggtgagggtatatagaa
tacatacaataggaaaatagagggggggagaatactggaggcttaaaact
ttaagcagtgattgggtcggggtacagcatgaagggaaggagtttgttaa
ccaataacaaaggatcctaaaggaaagcatttatgagacccactaatgtg
taggctaataaaaatgtgcgtgtaaactttaaacacaagtaccctagcca
tggttagtcaaaacttcccccagaagaaatgtgtg

gaattcaggtcctctgcaagaacgccaaatgctctcaacttcaaagccgc
ctctctagcccaaaggtgctgggttgaatcccaagcaattacgtatctgt
gttgaagggcaggggaggaggaaagagtagacagtgcagagtagaaagag
agccaggtgtggtggtgcacacttttaaatctcagcactcaggaaccaga
tgcagatctctgttgaattcaaggccaaactgatttacaaagcaagcgag
acaggacagccagcaagagctgctagggaggacagccaagctacaggtat
catctcaaaacaaaacaaccagaaataaaaagagacaagtgcataattct
tggctttgtaccaggcatgtaaccctagcacttgggaggtagagacaggg
aaatcatacgttcaaattcattcttcccaaatagcaagatacaagacatc
ctatgcaactcaatatccaaaacagccggcggttggggagaagcagtgac
atggcttagtggagaaagatgtttgccacacaaccctgaagaacttagaa
acccacataaaggtggaaggagacagccaactccacaagttggcctcaga
cctccatgcatgcgcagcggcacaggtgcccgctcctcctgctagtaaga
gaacaaaaaagaaccatctgcacgtggaatggttgtgggaggatgctgat
gggcacgcgtgactgtggaggtcccaggccgacgctggggttttctttga
tcgttttcgtccttattcattgatccagggtatctcaattgaacctggag
ttaatcagttaggctatttaactagccagtttattcctgggagccttgtt
cctcacgagatagggttagaggctggtggccatgcccatccaacgtttct
atgattctgggggactggaatttgggatccttcgtgctccagccgcaaga
ctttactcaagaccagttttagagtcagatccatctcgtgcccctttatt
cggatctgcggcgtacgattgccgtgagtagccgtactggtactatgagg
tagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_86217571_86218693
seq2: B6Ng01-225N05.b_45_1179

seq1  GAATTCAACAGAGGGAGAAAGGTTGAAGAAAAACTGATCTCAAATCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGAGGGAGAAAGGTTGAAGAAAAACTGATCTCAAATCTGGA  50

seq1  AGTGAAAAAGCATAATAGATCAAATAAACTCTGTGGAAAGAATCAGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAAGCATAATAGATCAAATAAACTCTGTGGAAAGAATCAGCAAG  100

seq1  AATGGACGGGGGATGGGGAGGACAGAATATCTTGAAGACAAGATGGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACGGGGGATGGGGAGGACAGAATATCTTGAAGACAAGATGGAGAA  150

seq1  AGCAGAACAAAATCTAACAAAGACAAAGAAAAAAAATAAGAAGACTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACAAAATCTAACAAAGACAAAGAAAAAAAATAAGAAGACTCCAA  200

seq1  TGGCAATTCCAATATACATATGACATTTGGAAAAGGCCAAATTTGTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATTCCAATATACATATGACATTTGGAAAAGGCCAAATTTGTTAGA  250

seq1  TTATCAGCATTGAAGAAACAGAAGAATCTCATTCTAGAGACATGAAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGCATTGAAGAAACAGAAGAATCTCATTCTAGAGACATGAAAAGT  300

seq1  GTTTTCAAGGGAACCAAGCAGGAAAAAAAAAATCCCAGATTTAGGAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAAGGGAACCAAGCAGGAAAAAAAAAATCCCAGATTTAGGAAAGG  350

seq1  AGATGCCAGTCCAGACACACAAGGCATTTACAACACCACACAGACAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCAGTCCAGACACACAAGGCATTTACAACACCACACAGACAGATC  400

seq1  AGAAAAGAGACTCCTCTCACCATATGACAACTAAACTACTTGGGACTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAGACTCCTCTCACCATATGACAACTAAACTACTTGGGACTGGG  450

seq1  AGTTCAGGAGTTATCAGTTGTAGCTGGCCTTCTGGTTATTTTAGTGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGGAGTTATCAGTTGTAGCTGGCCTTCTGGTTATTTTAGTGGGAT  500

seq1  CTTTTTCTTACCATCTTTCTTTACCCCAATCCCTTCCAACCCCCCAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTACCATCTTTCTTTACCCCAATCCCTTCCAACCCCCCAACTA  550

seq1  GAAAACAAAAATCCTCACTACAATTAGTATTCCTCATTCCTCTAGAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAAAATCCTCACTACAATTAGTATTCCTCATTCCTCTAGAGGAG  600

seq1  TCAAGTTTGGTTTCCAGCACCTAGCTAAGGTGGCTCTCCACTGCCTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTGGTTTCCAGCACCTAGCTAAGGTGGCTCTCCACTGCCTGTAA  650

seq1  CCTTGGTTCAGAATTCAGTGCCTTCTCTGATGCACAAGTGGTGTACACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTCAGAATTCAGTGCCTTCTCTGATGCACAAGTGGTGTACACTC  700

seq1  ACACAGATGGACAGGCAGACACACACACACACACACACACACACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATGGACAGGCAGACACACACACACACACACACACACACACACAC  750

seq1  ACACATCTGACAAAATTAAAACACTAAATGTTCAGAACAAAGGCTATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTGACAAAATTAAAACACTAAATGTTCAGAACAAAGGCTATTGA  800

seq1  ACTTTCAGATCTGTGCTTACTTGGGAGTACATGTCAAACTCAGGAAGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGATCTGTGCTTACTTGGGAGTACATGTCAAACTCAGGAAGCTA  850

seq1  AAAAGGGCCATGTAGGGGTGAGGGCTCTTCATGGGTGAGGGTATATAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCCATGTAGGGGTGAGGGCTCTTCATGGGTGAGGGTATATAGAA  900

seq1  TACATACAATAGGAAAATAGA-GGGGGGAGAATACTGGAGGC-TAAAACT  948
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  TACATACAATAGGAAAATAGAGGGGGGGAGAATACTGGAGGCTTAAAACT  950

seq1  TTAAGCAGTGATTGGGTCGGGGTACAGCATGA--GGGAGGAGTTTGTTAA  996
      ||||||||||||||||||||||||||||||||  || |||||||||||||
seq2  TTAAGCAGTGATTGGGTCGGGGTACAGCATGAAGGGAAGGAGTTTGTTAA  1000

seq1  CCAA-AACAAAGGATC--TAAGGAAAGCATTTATGAAGACCCACT-ATGT  1042
      |||| |||||||||||   |||||||||||||||| ||||||||| ||||
seq2  CCAATAACAAAGGATCCTAAAGGAAAGCATTTATG-AGACCCACTAATGT  1049

seq1  GTAGGCTAATTAAAATGTGCGTGT-AACTTTAAACACAGGTACCC-AG-C  1089
      |||||||||| ||||||||||||| ||||||||||||| |||||| || |
seq2  GTAGGCTAATAAAAATGTGCGTGTAAACTTTAAACACAAGTACCCTAGCC  1099

seq1  ATGGGTAGTCAAAACTTCCCCCAGAAG--ATGTGTG  1123
      |||| ||||||||||||||||||||||  |||||||
seq2  ATGGTTAGTCAAAACTTCCCCCAGAAGAAATGTGTG  1135


seq1: chr4_86340085_86341145
seq2: B6Ng01-225N05.g_66_1119 (reverse)

seq1  GCTACCTCATAGTACAGGTTACCGCTTACTCACGGCAATCCTTCGCCGCA  50
      |||||||||||||||  | ||| || |||||||||||||| | |||||||
seq2  GCTACCTCATAGTACCAG-TACGGC-TACTCACGGCAATCGTACGCCGCA  48

seq1  GATTCCCGAATAAAGGGGCACCGAAAATGGATCTGACTCTAAAACTGGTT  100
      |||  ||||||||||||||||   | ||||||||||||||||||||||| 
seq2  GAT--CCGAATAAAGGGGCAC--GAGATGGATCTGACTCTAAAACTGGT-  93

seq1  CTTTGAGTAAAGTCCTTGCGGCTGGAGCACGAA-GAT-CCAAATTCCAGT  148
        ||||||||||| ||||||||||||||||||| ||| ||||||||||||
seq2  -CTTGAGTAAAGT-CTTGCGGCTGGAGCACGAAGGATCCCAAATTCCAGT  141

seq1  -CCCCAGAATTCATAGAAACGTTGGATGGGCATGGCCACCAGCCTCTAAC  197
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGAA-TCATAGAAACGTTGGATGGGCATGGCCACCAGCCTCTAAC  190

seq1  CCTATCTCGTGAGGAACAAGGCTCCCAGGAATAAACTGGCTAGTTAAATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCGTGAGGAACAAGGCTCCCAGGAATAAACTGGCTAGTTAAATA  240

seq1  GCCTAACTGATTAACTCCAGGTTCAATTGAGATACCCTGGATCAATGAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACTGATTAACTCCAGGTTCAATTGAGATACCCTGGATCAATGAAT  290

seq1  AAGGACGAAAACGATCAAAGAAAACCCCAGCGTCGGCCTGGGACCTCCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACGAAAACGATCAAAGAAAACCCCAGCGTCGGCCTGGGACCTCCAC  340

seq1  AGTCACGCGTGCCCATCAGCATCCTCCCACAACCATTCCACGTGCAGATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACGCGTGCCCATCAGCATCCTCCCACAACCATTCCACGTGCAGATG  390

seq1  GTTCTTTTTTGTTCTCTTACTAGCAGGAGGAGCGGGCACCTGTGCCGCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTTTGTTCTCTTACTAGCAGGAGGAGCGGGCACCTGTGCCGCTG  440

seq1  CGCATGCATGGAGGTCTGAGGCCAACTTGTGGAGTTGGCTGTCTCCTTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGCATGGAGGTCTGAGGCCAACTTGTGGAGTTGGCTGTCTCCTTCC  490

seq1  ACCTTTATGTGGGTTTCTAAGTTCTTCAGGGTTGTGTGGCAAACATCTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATGTGGGTTTCTAAGTTCTTCAGGGTTGTGTGGCAAACATCTTT  540

seq1  CTCCACTAAGCCATGTCACTGCTTCTCCCCAACCGCCGGCTGTTTTGGAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTAAGCCATGTCACTGCTTCTCCCCAACCGCCGGCTGTTTTGGAT  590

seq1  ATTGAGTTGCATAGGATGTCTTGTATCTTGCTATTTGGGAAGAATGAATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTTGCATAGGATGTCTTGTATCTTGCTATTTGGGAAGAATGAATT  640

seq1  TGAACGTATGATTTCCCTGTCTCTACCTCCCAAGTGCTAGGGTTACATGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGTATGATTTCCCTGTCTCTACCTCCCAAGTGCTAGGGTTACATGC  690

seq1  CTGGTACAAAGCCAAGAATTATGCACTTGTCTCTTTTTATTTCTGGTTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACAAAGCCAAGAATTATGCACTTGTCTCTTTTTATTTCTGGTTGT  740

seq1  TTTGTTTTGAGATGATACCTGTAGCTTGGCTGTCCTCCCTAGCAGCTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGAGATGATACCTGTAGCTTGGCTGTCCTCCCTAGCAGCTCTT  790

seq1  GCTGGCTGTCCTGTCTCGCTTGCTTTGTAAATCAGTTTGGCCTTGAATTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGTCCTGTCTCGCTTGCTTTGTAAATCAGTTTGGCCTTGAATTC  840

seq1  AACAGAGATCTGCATCTGGTTCCTGAGTGCTGAGATTTAAAAGTGTGCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGATCTGCATCTGGTTCCTGAGTGCTGAGATTTAAAAGTGTGCAC  890

seq1  CACCACACCTGGCTCTCTTTCTACTCTGCACTGTCTACTCTTTCCTCCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACCTGGCTCTCTTTCTACTCTGCACTGTCTACTCTTTCCTCCTC  940

seq1  CCCTGCCCTTCAACACAGATACGTAATTGCTTGGGATTCAACCCAGCACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCCTTCAACACAGATACGTAATTGCTTGGGATTCAACCCAGCACC  990

seq1  TTTGGGCTAGAGAGGCGGCTTTGAAGTTGAGAGCATTTGGCGTTCTTGCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCTAGAGAGGCGGCTTTGAAGTTGAGAGCATTTGGCGTTCTTGCA  1040

seq1  GAGGACCTGAATTC  1061
      ||||||||||||||
seq2  GAGGACCTGAATTC  1054


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