BAC Information

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BAC

Clone NameB6Ng01-226O12
Chromosome9 (Build37)4 (Build37)
Map Location 20,625,071 - 20,625,357122,499,423 - 122,499,983
singlet/doubletsingletsinglet
Overlap geneRdh8
Upstream geneOlfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3
Downstream geneA230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226O12.bB6Ng01-226O12.g
ACCGA040714GA040715
length313561
definitionB6Ng01-226O12.b B6Ng01-226O12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,625,071 - 20,625,357)(122,499,423 - 122,499,983)
sequence
tgactcttgaaaactgctttcctgtgaagctctttcttctctagtgttgg
cttttaaaacatttttaaaaattagcatatattgtatcaactctctttct
gatattgtcaagcaaaaattgttttgttgggctgggaagatgactcagtg
actaagagcacttgctgctttgccagagaacaggggttggctcacaacca
accatccttaactccagtcctgggagagccaattccctcttctgattttc
ctgaggaccaggcacacatgtggtctgtgagtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtg
gaattcagttcatatatatctccaggccaaagcacagtggaaaagtgtct
ggtaaacaagtttctgtttacatgggcccagcaggaacaggaaaagactt
gaggctattgcagtttggctaaaaacacagtgtgttgatgccttgggcgg
caagcaagcagagcaactcattttaagagagggggtcagggcccaacaat
ctcagcatgtgggtggctgagttccaagcaacctatgctataaaaaatat
atatactggctggtcagtggtggcacacgcctttaatcccagcacttggg
aggcagaggcagaggcaggtggatttctgagttcggggctagcctggtct
acagaatgagttccaggacagccaggactacccaaagaaaccttgtctcg
ataaacaaaaaaacaaaaaaacataaaaaacaacaacaacaacaacatat
atatatatatatatatatatatatatatgtatatatatatatacatatat
atatatacactgtatcaaaaaatataacacggggggactgtggagggtgg
gagtggtttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20625071_20625357
seq2: B6Ng01-226O12.b_103_361

seq1  TAAAACATTTTTAAAAATAATATTGCTGGCCGGGTGTGGTGGCGCACGC-  49
      |||||||||||||||||| |          |   | | ||  |  || | 
seq2  TAAAACATTTTTAAAAATTA---------GCATATATTGTATC-AACTCT  40

seq1  CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCG-  98
      ||||     | |   |||  | ||| |   |   |  ||  || | | | 
seq2  CTTT-----CTGATATTGTCAAGCAAA---AATTGTTTTGTTGGGCTGGG  82

seq1  -AGGTCAGTCTGGTCTACAAAGTG-AGTTCCAGGACAGCCAGGGCTACAC  146
       || | | || |    || ||| | | || | |    ||||| |    ||
seq2  AAGATGACTCAG--TGACTAAGAGCACTTGCTGCTTTGCCAGAG---AAC  127

seq1  AGAGAAACCCTGTCTCA-----AAATATATATATATATATTGCT---AAA  188
      || |      || ||||     ||  ||   ||  |  | | ||   | |
seq2  AGGG----GTTGGCTCACAACCAACCATCCTTAACTCCAGTCCTGGGAGA  173

seq1  GGAGGTT---GGTGGTGGTTACAGTGTGTATGTGTGTGTGTGTGTGTGCA  235
      |    ||     |  || ||    || | |   |         |    ||
seq2  GCCAATTCCCTCTTCTGATTTTCCTGAGGACCAG---------GCACACA  214

seq1  TGTGAGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTG  285
      ||||     || ||||||||||||||||||||||||||||||| ||||||
seq2  TGTG-----GTCTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  259

seq1  TG  287
        
seq2  --  259

seq1: chr4_122499423_122499983
seq2: B6Ng01-226O12.g_66_626

seq1  GAATTCAGTTCATATATATCTCCAGGCCAAAGCACAGTGGAAAAGTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCATATATATCTCCAGGCCAAAGCACAGTGGAAAAGTGTCT  50

seq1  GGTAAACAAGTTTCTGTTTACATGGGCCCAGCAGGAACAGGAAAAGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACAAGTTTCTGTTTACATGGGCCCAGCAGGAACAGGAAAAGACTT  100

seq1  GAGGCTATTGCAGTTTGGCTAAAAACACAGTGTGTTGATGCCTTGGGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTATTGCAGTTTGGCTAAAAACACAGTGTGTTGATGCCTTGGGCGG  150

seq1  CAAGCAAGCAGAGCAACTCATTTTAAGAGAGGGGGTCAGGGCCCAACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGCAGAGCAACTCATTTTAAGAGAGGGGGTCAGGGCCCAACAAT  200

seq1  CTCAGCATGTGGGTGGCTGAGTTCCAAGCAACCTATGCTATAAAAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATGTGGGTGGCTGAGTTCCAAGCAACCTATGCTATAAAAAATAT  250

seq1  ATATACTGGCTGGTCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTGGCTGGTCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGG  300

seq1  AGGCAGAGGCAGAGGCAGGTGGATTTCTGAGTTCGGGGCTAGCCTGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGAGGCAGGTGGATTTCTGAGTTCGGGGCTAGCCTGGTCT  350

seq1  ACAGAATGAGTTCCAGGACAGCCAGGACTACCCAAAGAAACCTTGTCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGAGTTCCAGGACAGCCAGGACTACCCAAAGAAACCTTGTCTCG  400

seq1  ATAAACAAAAAAACAAAAAAACATAAAAAACAACAACAACAACAACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAAAAAACAAAAAAACATAAAAAACAACAACAACAACAACATAT  450

seq1  ATATATATATATATATATATATATATATGTATATATATATATACATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATGTATATATATATATACATATAT  500

seq1  ATATATACACTGTATCAAAAAATATAACACGGGGGGACTGTGGAGGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACACTGTATCAAAAAATATAACACGGGGGGACTGTGGAGGGTGG  550

seq1  GAGTGGTTTAT  561
      |||||||||||
seq2  GAGTGGTTTAT  561