BAC Information

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BAC

Clone NameB6Ng01-226O19
Chromosome9 (Build37)4 (Build37)
Map Location 27,943,656 - 27,943,833144,709,719 - 144,710,709
singlet/doubletsingletsinglet
Overlap geneOpcml
Upstream geneJam3, Igsf9b, Spata19, LOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226O19.bB6Ng01-226O19.g
ACCGA040728GA040729
length2781,022
definitionB6Ng01-226O19.b B6Ng01-226O19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,943,656 - 27,943,833)(144,709,719 - 144,710,709)
sequence
agcctgttctatcaccaccaatcagtgcccagatcagactggtttgtttc
ttttctcttctcttcatttctcttcatttctcttcatttctcttctcttc
tcttctcttctcttctcttctcttctcttctcttcctcttcctcttcctc
ttcctcttcctcttctctttcctttcccttctccctccctccctcccttc
cttcttttcttccttccttcattccttccttccttccttccttccttcct
ccctcccttcctccctccctccctccct

gaattcagatcaagcaggaccactgcctcagttgtgcaaacctgtaagag
tttttctaagactttagaggaaaaatatttattttcctttttccttcaga
gactacaaaaagccaactgtatctggcaatccgttaatcaaactgaatct
cacttctaaatcctctatgagagatcataggggagatgtagtgtaagatg
ttaacttggcatctgctaagtaaggggccctgtggtacatgttcctcagc
actgggaagatacactgcataaaccctggcaaggggagatgagacatgca
gagccagaccatccaacaaggtactaatggcagtgcgaactaagaaagtc
cccctgactaacgttctgagaaggcagggtgtataagaataagtcctgtg
tattcatagccttgcactggaggtgagaacacaggagagtaaactaccac
aggagagtaaaggagaaagcaagaggccctttactgaatgatgtttccct
aagaaaagctcaggaggccatgatgaatatgatggcacaggtctgcaatc
ccaactactccagtggctaaagcagaagaatcaaaagttcaaggctagcc
taggcaactgggacaatcaaaatagaaaaagattgatctaaacaggaatg
taacctacctcagttgatagagtgcttgcctaacatgcacaaggccttag
gtttaatacaaaagcaatacacacatatatacatacatacacacacacac
atatacacactctattataatactataaaattcatattatatataaatta
atttcatatatcatgtgtgtattataataataaaattaaaacacactttt
atatgtatatcacatataactatattatgtacacataatataaattaata
tactatatatctgcatattaaattaacattatactatatccatatatata
attatacaattatattattcctattaaaaatcattaaaagaatgtactta
tataatctttgtgtataataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27943656_27943833
seq2: B6Ng01-226O19.b_185_331 (reverse)

seq1  AGGGAGAGACGGAGGGAGGGAGGAAGAAAAGGAAGGAAGGAAGGAAGGAA  50
              | |||||||||||||      ||||||| ||| |||||||||
seq2  --------AGGGAGGGAGGGAGG-----GAGGAAGGGAGGGAGGAAGGAA  37

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAAGAAGGGAGG  100
      |||||||||||||||||||| ||||||||||||||| ||| |||||||||
seq2  GGAAGGAAGGAAGGAAGGAATGAAGGAAGGAAGAAAAGAAGGAAGGGAGG  87

seq1  GAGGGATGGAGGAAGGAAGAGAGAGGGGGGGAAGGAAGGAGGGAGGGAGG  150
      |||||| |||| |              ||| |||||| |||    ||| |
seq2  GAGGGAGGGAGAA--------------GGGAAAGGAAAGAGAAGAGGAAG  123

seq1  AAGAAAAGGAAGGAAGGAAGGAAGGAAG  178
      | ||| ||||||  ||||||  ||||||
seq2  AGGAAGAGGAAG--AGGAAG--AGGAAG  147


seq1: chr4_144709719_144710709
seq2: B6Ng01-226O19.g_71_1092

seq1  GAATTCAGATCAAGCAGGACCACTGCCTCAGTTGTGCAAACCTGTAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCAAGCAGGACCACTGCCTCAGTTGTGCAAACCTGTAAGAG  50

seq1  TTTTTCTAAGACTTTAGAGGAAAAATATTTATTTTCCTTTTTCCTTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAAGACTTTAGAGGAAAAATATTTATTTTCCTTTTTCCTTCAGA  100

seq1  GACTACAAAAAGCCAACTGTATCTGGCAATCCGTTAATCAAACTGAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAAAAAGCCAACTGTATCTGGCAATCCGTTAATCAAACTGAATCT  150

seq1  CACTTCTAAATCCTCTATGAGAGATCATAGGGGAGATGTAGTGTAAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTAAATCCTCTATGAGAGATCATAGGGGAGATGTAGTGTAAGATG  200

seq1  TTAACTTGGCATCTGCTAAGTAAGGGGCCCTGTGGTACATGTTCCTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTGGCATCTGCTAAGTAAGGGGCCCTGTGGTACATGTTCCTCAGC  250

seq1  ACTGGGAAGATACACTGCATAAACCCTGGCAAGGGGAGATGAGACATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAGATACACTGCATAAACCCTGGCAAGGGGAGATGAGACATGCA  300

seq1  GAGCCAGACCATCCAACAAGGTACTAATGGCAGTGCGAACTAAGAAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGACCATCCAACAAGGTACTAATGGCAGTGCGAACTAAGAAAGTC  350

seq1  CCCCTGACTAACGTTCTGAGAAGGCAGGGTGTATAAGAATAAGTCCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGACTAACGTTCTGAGAAGGCAGGGTGTATAAGAATAAGTCCTGTG  400

seq1  TATTCATAGCCTTGCACTGGAGGTGAGAACACAGGAGAGTAAACTACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAGCCTTGCACTGGAGGTGAGAACACAGGAGAGTAAACTACCAC  450

seq1  AGGAGAGTAAAGGAGAAAGCAAGAGGCCCTTTACTGAATGATGTTTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGTAAAGGAGAAAGCAAGAGGCCCTTTACTGAATGATGTTTCCCT  500

seq1  AAGAAAAGCTCAGGAGGCCATGATGAATATGATGGCACAGGTCTGCAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGCTCAGGAGGCCATGATGAATATGATGGCACAGGTCTGCAATC  550

seq1  CCAACTACTCCAGTGGCTAAAGCAGAAGAATCAAAAGTTCAAGGCTAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTACTCCAGTGGCTAAAGCAGAAGAATCAAAAGTTCAAGGCTAGCC  600

seq1  TAGGCAACTGGGACAATCAAAATAGAAAAAGATTGATCTAAACAGGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAACTGGGACAATCAAAATAGAAAAAGATTGATCTAAACAGGAATG  650

seq1  TAACCTACCTCAGTTGATAGAGTGCTTGCCTAACATGCACAAGGCCTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTACCTCAGTTGATAGAGTGCTTGCCTAACATGCACAAGGCCTTAG  700

seq1  GTTTAATAC-AAAGCAATACACACATATATACATACATACACACACACAC  749
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATACAAAAGCAATACACACATATATACATACATACACACACACAC  750

seq1  ATATACACACTCTATTATAATACTAT-AAATTCATATTATATATAAATT-  797
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  ATATACACACTCTATTATAATACTATAAAATTCATATTATATATAAATTA  800

seq1  ATTTCATATATCATGTGTGTATTAT----ATATAAATTAAACACAC-TTT  842
      |||||||||||||||||||||||||    ||| || | |||||||| |||
seq2  ATTTCATATATCATGTGTGTATTATAATAATAAAATTAAAACACACTTTT  850

seq1  ATATGTATATCACATAT-ACTATA-TATGTACACAT-ATATAAATT-ATA  888
      ||||||||||||||||| |||||| ||||||||||| ||||||||| |||
seq2  ATATGTATATCACATATAACTATATTATGTACACATAATATAAATTAATA  900

seq1  TACTATATATCTGCATA-TAAATT-ACA-TATACTATAT-CATATATATA  934
      ||||||||||||||||| |||||| ||| |||||||||| ||||||||||
seq2  TACTATATATCTGCATATTAAATTAACATTATACTATATCCATATATATA  950

seq1  A-TATACATATATAT-----CTATT-AAAATCAT--AAAG-ATGTAC-TA  973
      | ||||||  |||||     ||||| ||||||||  |||| |||||| ||
seq2  ATTATACAATTATATTATTCCTATTAAAAATCATTAAAAGAATGTACTTA  1000

seq1  TATA---TCTGTGTAT-ATAAA  991
      ||||   | ||||||| |||||
seq2  TATAATCTTTGTGTATAATAAA  1022


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