BAC Information

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BAC

Clone NameB6Ng01-227C03
Chromosome4 (Build37)
Map Location 13,804,356 - 13,915,564
singlet/doubletdoublet
Overlap geneRunx1t1
Upstream geneOTTMUSG00000004461, LOC100039988
Downstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227C03.bB6Ng01-227C03.g
ACCGA040883GA040884
length1,1031,176
definitionB6Ng01-227C03.b B6Ng01-227C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,914,467 - 13,915,564)(13,804,356 - 13,805,546)
sequence
gaattcaaatcatttgtttgacattaagtaagcatatcaataaatcaaac
acatcttcttcatttttaaattagttttatgagttatattaacattgact
ccaaagtttacttgtaagtagtatacttaaaagtaataggactaaagaaa
cgaatgatcattggcaaaggggccaagagaatctacctagtgttatcaga
agaaagaaggggtcctgggaaaatggctaagtttctaacttgcttgctgt
gtaggcacagggatgtgaatttgagccacggtacccatgaaaaacctgga
tatggcagtgttcatctataaccccctcacagagaaagcagaaacaagga
tacctgtagcttgttccccaacgggtctcgctaaattaataagtttcaag
ttcagtgagagaccctatctcaaataacaacaacaacaacaacgtcaatg
tggacagcaactgaaaattatatccaatgttacctttagcttcttcctct
acctgcccctacatgaacactcatttatatgcatatatcatatacataat
tttatacatgtgcacacacatacacgggcaggaaaaaaaaaacgcactta
tctgctctctcctttaaaaagacatgaagttacctggggtgaaatggaac
ataggctggtaatttgttacaggaattctagagccatattgcctatattt
aaattactctactagctactgctcagaactgtggatgggtgactggactg
tgtatccactagctacaagaatgagatttggatgatgaataaaacgttga
tgtgtgtgaagcatgcaggacagtgccaaacacactgaaagtgctatata
agtgtttataaacaaataaagggacatgtgtcctagaggaagtcccctag
gaaacacaagtcaaaacacagacaaagaagtgataattgatgaaacaaag
atatagaggagggttgggatttttatattatagtgtgagcttccaatcta
tatctgatcttcgtcaagcttagtgaatgcaaagcattggggcccatact
agaactactgattagaactttataagaggagtggtgcaaattagaagtta
gtt

gaattcctccgggggcagcaagcaatgggcagccaatacagaagcatact
gtgtattttccactggatccaagttgtagcttttcttctttttggttttt
cttatttggcatatgggaatctatggaatcgtccattttgttttcttccc
agtacactttgtgcattctgaaccgagtcttgatgtagtttaggttcatg
ggactaggaagttgagaaagaacaattttgtctctcttgtgtccatgcaa
tactgaagatggagtgaaccttgccaggagagtttccggttacttttaga
tgtatctttcaattacatcctttgtcatgctaagatattgtttggttgtg
gtacaggtgacatttattcttttctcactgcggttcccactcatcacatc
gaacagtctggactaattttctatagatgaatgctaaatattgaggtgtg
aatggaagctttacccagagagctctataaagtgattgcgggattttcct
gggcagacttcttaaaagcaggtgtggacttcccagtgggtatcaaggat
gtagtattcctaatgaatatccatgtgtccagcacatgaaaataccacag
tcaaactaaccatcactcagcttcttacacttggaaaggactctcaaact
taacgttgtaagcagaaaaaccaaacaaaatccagagctaggcttactag
ttcacacctgtaatccctatagttgaacactgaggcagaggagcaagaat
gaggcaggatgctacaggatgagaccccatctcataaaaccaaaccaaaa
tgcaacaacaacaaaggcccccaagcaataagcaaacctgactactctgt
ttttaaaagagaaacctacaaagtgtacctttgtcatgaaaatactacat
accattttcacagtaaagaaaactaagcagagtttaaaattttgaaaaat
gctgaatagacacaactcttactcaatacaacttttatgtaacacactca
ctggattgtcctcactgaaattacattataagaactactttgattttgat
gtgcatttggcgcatttgctgcttttaatatcttgtgtaggtgtcagctc
tgagtatacatagttgtgactgccctgtggcactggtattgacctgggtc
caattggaaccagccaatcattggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13914467_13915564
seq2: B6Ng01-227C03.b_43_1142 (reverse)

seq1  TAACTTCCTAAATTTGCA-CACTCCTCTTATAAAG-TCTAATCAGTAGTT  48
      |||||||   |||||||| |||||||||||||||| ||||||||||||||
seq2  TAACTTC--TAATTTGCACCACTCCTCTTATAAAGTTCTAATCAGTAGTT  48

seq1  CTGGTATTGGGCCCAATGCTTTGCATTCACTAAGCCTGACGAAGATTCAG  98
      || |||| || |||||||||||||||||||||||| ||||||||| ||||
seq2  CTAGTATGGGCCCCAATGCTTTGCATTCACTAAGCTTGACGAAGA-TCAG  97

seq1  ATATAGATTGG-AGCTCACACTAT-ATATAAAAATCCCAACCCTCCTCTA  146
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  ATATAGATTGGAAGCTCACACTATAATATAAAAATCCCAACCCTCCTCTA  147

seq1  TATCTTTGTTTCATCAATTATCACTTCTTTGTCTGTGTTTTGACTTGTGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGTTTCATCAATTATCACTTCTTTGTCTGTGTTTTGACTTGTGT  197

seq1  TTCCTAGGGGACTTCCTCTAGGACACATGTCCC-TTATTTGTTTATAAAC  245
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTCCTAGGGGACTTCCTCTAGGACACATGTCCCTTTATTTGTTTATAAAC  247

seq1  ACTTATATAGCACTTTCAGTGTGTTTGGCACTGTCCTGCATGCTTCACAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATAGCACTTTCAGTGTGTTTGGCACTGTCCTGCATGCTTCACAC  297

seq1  ACATCAACGTTTTATTCATCATCCAAATCTCATTCTTGTAGCTAGTGGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACGTTTTATTCATCATCCAAATCTCATTCTTGTAGCTAGTGGAT  347

seq1  ACACAGTCCAGTCACCCATCCACAGTTCTGAGCAGTAGCTAGTAGAGTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTCCAGTCACCCATCCACAGTTCTGAGCAGTAGCTAGTAGAGTAA  397

seq1  TTTAAATATAGGCAATATGGCTCTAGAATTCCTGTAACAAATTACCAGCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATAGGCAATATGGCTCTAGAATTCCTGTAACAAATTACCAGCC  447

seq1  TATGTTCCATTTCACCCCAGGTAACTTCATGTCTTTTTAAAGGAGAGAGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCCATTTCACCCCAGGTAACTTCATGTCTTTTTAAAGGAGAGAGC  497

seq1  AGATAAGTGCGTTTTTTTTTTCCTGCCCGTGTATGTGTGTGCACATGTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGTGCGTTTTTTTTTTCCTGCCCGTGTATGTGTGTGCACATGTAT  547

seq1  AAAATTATGTATATGATATATGCATATAAATGAGTGTTCATGTAGGGGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATGTATATGATATATGCATATAAATGAGTGTTCATGTAGGGGCA  597

seq1  GGTAGAGGAAGAAGCTAAAGGTAACATTGGATATAATTTTCAGTTGCTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGGAAGAAGCTAAAGGTAACATTGGATATAATTTTCAGTTGCTGT  647

seq1  CCACATTGACGTTGTTGTTGTTGTTGTTATTTGAGATAGGGTCTCTCACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTGACGTTGTTGTTGTTGTTGTTATTTGAGATAGGGTCTCTCACT  697

seq1  GAACTTGAAACTTATTAATTTAGCGAGACCCGTTGGGGAACAAGCTACAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGAAACTTATTAATTTAGCGAGACCCGTTGGGGAACAAGCTACAG  747

seq1  GTATCCTTGTTTCTGCTTTCTCTGTGAGGGGGTTATAGATGAACACTGCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTGTTTCTGCTTTCTCTGTGAGGGGGTTATAGATGAACACTGCC  797

seq1  ATATCCAGGTTTTTCATGGGTACCGTGGCTCAAATTCACATCCCTGTGCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGGTTTTTCATGGGTACCGTGGCTCAAATTCACATCCCTGTGCC  847

seq1  TACACAGCAAGCAAGTTAGAAACTTAGCCATTTTCCCAGGACCCCTTCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCAAGCAAGTTAGAAACTTAGCCATTTTCCCAGGACCCCTTCTT  897

seq1  TCTTCTGATAACACTAGGTAGATTCTCTTGGCCCCTTTGCCAATGATCAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGATAACACTAGGTAGATTCTCTTGGCCCCTTTGCCAATGATCAT  947

seq1  TCGTTTCTTTAGTCCTATTACTTTTAAGTATACTACTTACAAGTAAACTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTCTTTAGTCCTATTACTTTTAAGTATACTACTTACAAGTAAACTT  997

seq1  TGGAGTCAATGTTAATATAACTCATAAAACTAATTTAAAAATGAAGAAGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCAATGTTAATATAACTCATAAAACTAATTTAAAAATGAAGAAGA  1047

seq1  TGTGTTTGATTTATTGATATGCTTACTTAATGTCAAACAAATGATTTGAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGATTTATTGATATGCTTACTTAATGTCAAACAAATGATTTGAA  1097

seq1  TTC  1098
      |||
seq2  TTC  1100


seq1: chr4_13804356_13805546
seq2: B6Ng01-227C03.g_70_1245

seq1  GAATTCCTCCGGGGGCAGCAAGCAATGGGCAGCCAATACAGAAGCATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCGGGGGCAGCAAGCAATGGGCAGCCAATACAGAAGCATACT  50

seq1  GTGTATTTTCCACTGGATCCAAGTTGTAGCTTTTCTTCTTTTTGGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTTCCACTGGATCCAAGTTGTAGCTTTTCTTCTTTTTGGTTTTT  100

seq1  CTTATTTGGCATATGGGAATCTATGGAATCGTCCATTTTGTTTTCTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTGGCATATGGGAATCTATGGAATCGTCCATTTTGTTTTCTTCCC  150

seq1  AGTACACTTTGTGCATTCTGAACCGAGTCTTGATGTAGTTTAGGTTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTTTGTGCATTCTGAACCGAGTCTTGATGTAGTTTAGGTTCATG  200

seq1  GGACTAGGAAGTTGAGAAAGAACAATTTTGTCTCTCTTGTGTCCATGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGGAAGTTGAGAAAGAACAATTTTGTCTCTCTTGTGTCCATGCAA  250

seq1  TACTGAAGATGGAGTGAACCTTGCCAGGAGAGTTTCCGGTTACTTTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGATGGAGTGAACCTTGCCAGGAGAGTTTCCGGTTACTTTTAGA  300

seq1  TGTATCTTTCAATTACATCCTTTGTCATGCTAAGATATTGTTTGGTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTTCAATTACATCCTTTGTCATGCTAAGATATTGTTTGGTTGTG  350

seq1  GTACAGGTGACATTTATTCTTTTCTCACTGCGGTTCCCACTCATCACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGTGACATTTATTCTTTTCTCACTGCGGTTCCCACTCATCACATC  400

seq1  GAACAGTCTGGACTAATTTTCTATAGATGAATGCTAAATATTGAGGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTCTGGACTAATTTTCTATAGATGAATGCTAAATATTGAGGTGTG  450

seq1  AATGGAAGCTTTACCCAGAGAGCTCTATAAAGTGATTGCGGGATTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGCTTTACCCAGAGAGCTCTATAAAGTGATTGCGGGATTTTCCT  500

seq1  GGGCAGACTTCTTAAAAGCAGGTGTGGACTTCCCAGTGGGTATCAAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGACTTCTTAAAAGCAGGTGTGGACTTCCCAGTGGGTATCAAGGAT  550

seq1  GTAGTATTCCTAATGAATATCCATGTGTCCAGCACATGAAAATACCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATTCCTAATGAATATCCATGTGTCCAGCACATGAAAATACCACAG  600

seq1  TCAAACTAACCATCACTCAGCTTCTTACACTTGGAAAGGACTCTCAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTAACCATCACTCAGCTTCTTACACTTGGAAAGGACTCTCAAACT  650

seq1  TAACGTTGTAAGCAGAAAAACCAAACAAAATCCAGAGCTAGGCTTACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTTGTAAGCAGAAAAACCAAACAAAATCCAGAGCTAGGCTTACTAG  700

seq1  TTCACACCTGTAATCCCTATAGTTGAACACTGAGGCAGAGGAGCAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCTGTAATCCCTATAGTTGAACACTGAGGCAGAGGAGCAAGAAT  750

seq1  GAGGCAGGATGCTACAGGATGAGACCCCATCTCATAAAACCAAACCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGATGCTACAGGATGAGACCCCATCTCATAAAACCAAACCAAAA  800

seq1  TGCAACAACAACAAAGGCCCCCAAGCAATAAGCAAACCTGACTACTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAACAACAAAGGCCCCCAAGCAATAAGCAAACCTGACTACTCTGT  850

seq1  TTTTAAAAGAGAAACCTACAAAGTGTACCTTTGTCATGAAAATACTACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGAGAAACCTACAAAGTGTACCTTTGTCATGAAAATACTACAT  900

seq1  ACCATTTTCACAGTAAAAGAAAACTAAGCAGAGTTTAAAATATTTGAAAA  950
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  ACCATTTTCACAGT-AAAGAAAACTAAGCAGAGTTTAAAAT-TTTGAAAA  948

seq1  ATGCTGAATAGACACAACTCTTACTCAATACAACTTTTATGTAACACACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAATAGACACAACTCTTACTCAATACAACTTTTATGTAACACACT  998

seq1  CACTGGATTGTCCTCACTGGAAATTACAATTATAAAGAACTTACTTTGAT  1050
      |||||||||||||||||| |||||||| ||||| |||||| |||||||||
seq2  CACTGGATTGTCCTCACT-GAAATTAC-ATTAT-AAGAAC-TACTTTGAT  1044

seq1  TTTGATGTGCATTTGGCGCATTTTGCCTGCTTTT-ATATC-TGTGTAAGG  1098
      |||||||||||||||||||||||   |||||||| ||||| ||||||  |
seq2  TTTGATGTGCATTTGGCGCATTT--GCTGCTTTTAATATCTTGTGTA--G  1090

seq1  GTGTCAGCTCTTGGAGTTATACATAGTTGTGGACTGCCCTGTTGGCACTG  1148
      |||||||||||  ||| ||||||||||||| |||||||||| ||||||| 
seq2  GTGTCAGCTCT--GAG-TATACATAGTTGT-GACTGCCCTG-TGGCACT-  1134

seq1  GGAATTGAACCTGGGTTCAATTGGAACCCAGCAATCAGTGGCT  1191
      || |||| |||||||| |||||||||||   |||||| |||||
seq2  GGTATTG-ACCTGGGTCCAATTGGAACCAGCCAATCATTGGCT  1176


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