BAC Information

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BAC

Clone NameB6Ng01-227K19
Chromosome4 (Build37)
Map Location 145,587,134 - 145,730,681
singlet/doubletdoublet
Overlap geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227K19.bB6Ng01-227K19.g
ACCGA041285GA041286
length1,220965
definitionB6Ng01-227K19.b B6Ng01-227K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,729,465 - 145,730,681)(145,587,134 - 145,588,137)
sequence
gaattcatacaggagagaaaccttacaaatgcactgaatgtgacaaatcc
tttactgaaaagggcaaactgagaattcatcagagaattcatacaggaga
gaaaccttacaaatgtagtgaatgtgacaaatgctttactgaaaaaggcc
atcaaagaattcatacaggagagataccttacaaatagtttgtatgtgac
aaatacaatacaatgtcagtctgagaaatcatcagtttttaatacagtag
agaatatttataaatgaagtgaacgagacaatcctttaccaagatatatc
atcttaaaaatcattagagaatacttacagaagagaaacttttcaattat
atcaaaggtatgaatcctttactcttggcctatttcctagaatgttaaca
gtgaatacttacaggatacaaacttaactcatgcattgtatgaagaaata
tctttgacttcatttcaggtcaaagagaatatctaataactttttagggg
aaagtatttctgttggggaaagtgtggcctgtgttttattcacgttctat
tcttgacaacaattgaggctccacactagagaattagtatgattatgaaa
atcatgtgaaaactttcatgcaatgttcaaatcttaaataatgtcaacta
ttttttgcttgaagaaactctgaaaatgtaaaaatgtagaaagcttttca
tgatacctttttacttgttcacccttaaatgttacaagatgaagacaagt
tgggaagtgaggagatattattgtgtaacacattcattgagacagaaata
atccatttcaaaaggaaactatttaaggtctttaatgcagtcctcaaaat
atctaataaaactggtaacattctgtatatttaattcaaatgagccaatt
gagaaaaattatacttaaaagaatatctggcaactgagccactcagacag
catattctttatcctataaatatgcttacagatgtgaagtgtgcttcagt
attcagtaataatattcttctcaaatgctttggttcacattataaggata
ccaactggatcattatttcccatttattggaacggaagtcctataggtct
tctggaaaatggctgaccggttgatacaaataacaagaacattgtggggt
gtctgggtcctgttgtgccttatacctcactctaccgtaggaataacata
gattcattcctttctaaatc
gaattcttctaagcccacctacttatgggccttttaattaattagcttcc
cacttcttcacagcaatgtttggtgttttgaatttttgcttgcttgcttg
cttgcttgcttgcttactcgtttctttgcttttaatttgtctttttctta
aacccatctaatcgtgcaggaatcccacactccccatcgagaaccactcc
tccaactctgttgcaggctgccttccacacaacttcccaggacctactct
gcacagcttcttcacaaagttgctgccagactagaccagagctggatgta
gtaggacactgcacctgggttctgaacccttcagatacaatggatgctgt
ctaacttctcatattgtgcgtgtagccctctgggctataaatgcacaaaa
ttaagcagtccctttgaactctgatgctcagaacagatacccaaaacaaa
caaaaacgtagataaaatgtccttggctcaaaccacaaaccatagaggta
tcttataaggagcacaatttatgtgatatccaagacaaagaatggaaaac
ccacagtcatgatcaaggacattaaagtttgtaaaccatgtgaatccact
cagacagaaacaaaatgaatcttgggcaagaaaataataccagatgcctg
aaggaaataaggacaatataaaatattaaaattatgttcaataggtgctt
agaaataccacaaaaaaaaaaaatcctgaagagaaaatgcagtgaggcaa
ataaaaatgatacatagagaacctgtgggagacagattatcagacttaaa
gaaaaagtagaggaggtggatgcctcaatcaaagaaaatggtgaattaaa
atgatgttaggtcaagggacaatattatttactgcttgaaggatgaggca
ataaagagaaactcctttgggaaaactgtcctgatcttgccaaaaaaaaa
gtaaggaaggaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145729465_145730681
seq2: B6Ng01-227K19.b_48_1267 (reverse)

seq1  GATTTAAGAAAAGAATGGAAATCTATTTTATTCCTTACGGTAGAGTGGAG  50
      ||||| ||||| |||||  ||||||| ||||||| ||||||||||||  |
seq2  GATTT-AGAAAGGAATG--AATCTATGTTATTCC-TACGGTAGAGTGAGG  46

seq1  TATTAAGGCACAACAGGA-CCAGACA--CCACAATG-TCTTGTAATATGT  96
      || ||||||||||||||| |||||||  |||||||| |||||| || |||
seq2  TA-TAAGGCACAACAGGACCCAGACACCCCACAATGTTCTTGTTATTTGT  95

seq1  ATCAA-CGGTCAG-CATTTTTCAG-AGACCTATAGGACTTTCGTT-CAAT  142
      ||||| ||||||| |||||| ||| ||||||||||||||| |||| ||||
seq2  ATCAACCGGTCAGCCATTTTCCAGAAGACCTATAGGACTTCCGTTCCAAT  145

seq1  AAATGGGAAATAATGAT-CAGTTGTTATCC-TATAATGTGAACC-AAGCA  189
      ||||||||||||||||| |||||| ||||| ||||||||||||| |||||
seq2  AAATGGGAAATAATGATCCAGTTGGTATCCTTATAATGTGAACCAAAGCA  195

seq1  TTTGAGAAGAATTATTATTACTGAATACTCGAAGCACACTTCACATCTGT  239
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  TTTGAGAAGAA-TATTATTACTGAATACT-GAAGCACACTTCACATCTGT  243

seq1  AAGCATATTTATAGGATAAAGAATATGCTGTCTGGGTGGCTCAGTTTGCC  289
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  AAGCATATTTATAGGATAAAGAATATGCTGTCTGAGTGGCTCAG-TTGCC  292

seq1  AGATATTCTTTTAAGTATAATTTTTCTCAATTGGCTCATTTGAATTAAAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTCTTTTAAGTATAATTTTTCTCAATTGGCTCATTTGAATTAAAT  342

seq1  ATACAGAATGTTACCAGTTTTATTAGATATTTTGAGGACTGCATTAAAGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAATGTTACCAGTTTTATTAGATATTTTGAGGACTGCATTAAAGA  392

seq1  CCTTAAATAGTTTCCTTTTGAAATGGATTATTTCTGTCTCAATGAATGTG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATAGTTTCCTTTTGAAATGGATTATTTCTGTCTCAATGAATGTG  442

seq1  TTACACAATAATATCTCCTCACTTCCCAACTTGTCTTCATCTTGTAACAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAATAATATCTCCTCACTTCCCAACTTGTCTTCATCTTGTAACAT  492

seq1  TTAAGGGTGAACAAGTAAAAAGGTATCATGAAAAGCTTTCTACATTTTTA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGTGAACAAGTAAAAAGGTATCATGAAAAGCTTTCTACATTTTTA  542

seq1  CATTTTCAGAGTTTCTTCAAGCAAAAAATAGTTGACATTATTTAAGATTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAGAGTTTCTTCAAGCAAAAAATAGTTGACATTATTTAAGATTT  592

seq1  GAACATTGCATGAAAGTTTTCACATGATTTTCATAATCATACTAATTCTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTGCATGAAAGTTTTCACATGATTTTCATAATCATACTAATTCTC  642

seq1  TAGTGTGGAGCCTCAATTGTTGTCAAGAATAGAACGTGAATAAAACACAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGGAGCCTCAATTGTTGTCAAGAATAGAACGTGAATAAAACACAG  692

seq1  GCCACACTTTCCCCAACAGAAATACTTTCCCCTAAAAAGTTATTAGATAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTTTCCCCAACAGAAATACTTTCCCCTAAAAAGTTATTAGATAT  742

seq1  TCTCTTTGACCTGAAATGAAGTCAAAGATATTTCTTGATACAATGCATGA  789
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTCTTTGACCTGAAATGAAGTCAAAGATATTTCTTCATACAATGCATGA  792

seq1  GTTAAGTTTGTATCCTGTAAGTATTCACTGTTAACATTCTAGGAAATAGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTTTGTATCCTGTAAGTATTCACTGTTAACATTCTAGGAAATAGG  842

seq1  CCAAGAGTAAAGGATTCATACCTTTGATATAATTGAAAAGTTTCTCTTCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGTAAAGGATTCATACCTTTGATATAATTGAAAAGTTTCTCTTCT  892

seq1  GTAAGTATTCTCTAATGATTTTTAAGATGATATATCTTGGTAAAGGATTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTATTCTCTAATGATTTTTAAGATGATATATCTTGGTAAAGGATTG  942

seq1  TCTCGTTCACTTCATTTATAAATATTCTCTACTGTATTAAAAACTGATGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTTCACTTCATTTATAAATATTCTCTACTGTATTAAAAACTGATGA  992

seq1  TTTCTCAGACTGACATTGTATTGTATTTGTCACATACAAACTATTTGTAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGACTGACATTGTATTGTATTTGTCACATACAAACTATTTGTAA  1042

seq1  GGTATCTCTCCTGTATGAATTCTCTGATGGCCTTTTTCAGTAAAGCATTT  1089
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGTATCTCTCCTGTATGAATTCTTTGATGGCCTTTTTCAGTAAAGCATTT  1092

seq1  GTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGAT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGAT  1142

seq1  GAATTCTCAGTTTGCCCTTTTCAGTAAAGGATTTGTCACATTCAGTGCAT  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTTGCCCTTTTCAGTAAAGGATTTGTCACATTCAGTGCAT  1192

seq1  TTGTAAGGTTTCTCTCCTGTATGAATTC  1217
      ||||||||||||||||||||||||||||
seq2  TTGTAAGGTTTCTCTCCTGTATGAATTC  1220

seq1: chr4_145587134_145588137
seq2: B6Ng01-227K19.g_67_1031

seq1  GAATTCTTCTAAGCCCACCTACTTATGGGCCTTTTAATTAATTAGCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAAGCCCACCTACTTATGGGCCTTTTAATTAATTAGCTTCC  50

seq1  CACTTCTTCACAGCAATGTTTGGTGTTTTGAATTTTTGCTTGCTTGCTTG  100
      |||||||||||||||||||||||||||||||||||               
seq2  CACTTCTTCACAGCAATGTTTGGTGTTTTGAATTT---------------  85

seq1  CTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCT  150
                               |||||||||||||||||||||||||
seq2  -------------------------TTGCTTGCTTGCTTGCTTGCTTGCT  110

seq1  TGCTTATTCGTTTCTTTGCTTTTAATTTGTCTTTTTCTTAAACTCATCTA  200
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCTTACTCGTTTCTTTGCTTTTAATTTGTCTTTTTCTTAAACCCATCTA  160

seq1  ATCGTGCAGGAATCCCACACTCCCCATCAGGAACCACTCCTCCAACTCTG  250
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  ATCGTGCAGGAATCCCACACTCCCCATCGAGAACCACTCCTCCAACTCTG  210

seq1  TTGCAGGCTGCCTTCCACACAACTTCCCAGGACCTACTCTGCAAAGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGCAGGCTGCCTTCCACACAACTTCCCAGGACCTACTCTGCACAGCTTC  260

seq1  TTCACAAAGTTGCTGCCAGACTAGACCAGAGCTGGATGTAGTAGGACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAGTTGCTGCCAGACTAGACCAGAGCTGGATGTAGTAGGACACT  310

seq1  GCACCTGGGTTCTGAACCCTTCAGATTCAATGGATCCTGTCTAACTTCTC  400
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  GCACCTGGGTTCTGAACCCTTCAGATACAATGGATGCTGTCTAACTTCTC  360

seq1  ATATTGTGCGTGTAGCCCTCTGGGCTATAAATGCACAAAATTAAGCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGCGTGTAGCCCTCTGGGCTATAAATGCACAAAATTAAGCAGTC  410

seq1  CCTTTGAATTCTGATGCTCAGAACAGATACCCAAAACAAACAAAAACGTA  500
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAACTCTGATGCTCAGAACAGATACCCAAAACAAACAAAAACGTA  460

seq1  GATAAAATGTCCTTGGCTCAAACCACAAACCATAGAGGTATCTTATAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATGTCCTTGGCTCAAACCACAAACCATAGAGGTATCTTATAAGG  510

seq1  AGCACAATTTATGTGATATCCAAGACAAAGAATGGAAAACCCACAGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATTTATGTGATATCCAAGACAAAGAATGGAAAACCCACAGTCAT  560

seq1  GATCAAGGACATTAAAGTTTGTAAACC-TGTGAATCCACTCAGACAGGAA  649
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  GATCAAGGACATTAAAGTTTGTAAACCATGTGAATCCACTCAGACAGAAA  610

seq1  CAAAATGAATCTTGGTCAAGAAAATAACACCAGATGCCTGAAGGAAATAA  699
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  CAAAATGAATCTTGGGCAAGAAAATAATACCAGATGCCTGAAGGAAATAA  660

seq1  GGACAATATAAAATATTAAAATTATGTTCAATAGGTGCTTAGAAATGCCA  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGACAATATAAAATATTAAAATTATGTTCAATAGGTGCTTAGAAATACCA  710

seq1  C-ACAAAAAAAAATCCTGAAGAGAAAATGCAGTGAGGCAAATAAAAATGA  798
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAATCCTGAAGAGAAAATGCAGTGAGGCAAATAAAAATGA  760

seq1  TACATAGAGAACCTGTGGGAGACAGATTATCAGACTTAAAGAAAAAGTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAGAACCTGTGGGAGACAGATTATCAGACTTAAAGAAAAAGTAG  810

seq1  AGGAGGTGGATGCCTCAATCAAAGAAAATGGTGAATTAAAATGATGTTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGGATGCCTCAATCAAAGAAAATGGTGAATTAAAATGATGTTAG  860

seq1  GTCAAGGGACAATATTATTTACTGCTTGAAGGATGAGGCAATAAAGAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGGACAATATTATTTACTGCTTGAAGGATGAGGCAATAAAGAGAA  910

seq1  ACTCCTTT-GGAAAACTGTCCTGATCTTTGTCAAAAAAAAAGTAAGGAAA  997
      |||||||| ||||||||||||||||| ||| |||||||||||||||| ||
seq2  ACTCCTTTGGGAAAACTGTCCTGATC-TTGCCAAAAAAAAAGTAAGG-AA  958

seq1  GGAAGAA  1004
      |||||||
seq2  GGAAGAA  965