BAC Information

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BAC

Clone NameB6Ng01-228B13
Chromosome4 (Build37)
Map Location 37,228,945 - 37,368,336
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042132, LOC545600, LOC621458
Downstream geneLOC277771, LOC100039448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228B13.bB6Ng01-228B13.g
ACCGA041594GA041595
length1,0971,095
definitionB6Ng01-228B13.b B6Ng01-228B13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,228,945 - 37,230,036)(37,367,279 - 37,368,336)
sequence
gaattcagtactgggttataacaattaatgggaatgaaagaagtttagag
ggtagatctgtatgatccactagaggtgtggccaggagagagaaggagac
taaagcatgtgccttactgtagaacaggggataacactggacaattagtg
tttgaggagctgaggaggaggtaaagatctgcagttagcccatttgcttc
tcttgctgaatgcagttcatcaacttctgccacataaattttacagtaag
ttcataaatttcttatgacaaagttgcagcaaattctatatgttttatct
tacttatagattttattcatttatagaaataataaaatagattatatttt
acttatagaagaggatagttctttaactctattgaaaatataaatctgtt
aaataactgtatatttgttagatatataaggtggtcagtaagtttttaat
ttatattttaactcaatatttagtattttgattaatatattcccaagaat
agtagtttttctttactggtgctatttaggataaagttgtatttttactc
ttattattcatagtattttaatgacatattaaaatataattaagtttata
tttattcttggctcataatacttatttttttttttacttcccacaaccca
gcctaatttttggccaattattaatgtactttgattttttaatttaacat
gtgagctatttacacttgtagcctcatactttctaaaaaaattgaactgt
gataattcatcttttaatttttttaagtactaatattaatgtttggttct
atcaagatcatacactaacaaaacatcaccgatttttcacctaaattaaa
taattttatataaaaaaaagagcatgtcaatatcctcacaattacaaaac
tgagactggaatagtggtttgttatgataccagttcttgtaattctgagt
ctttgtagattaccatgagtttgagatcaatctaagcttcatagtaattt
ccaggcctcatctagtcttaaataagttatgattcagtaaataaacaaat
aattcctacaaggcaaaataaaaataaaatatatttactactggaag

gaattctgtgaagcccttgggagttcttcagactgtggcattgattgccc
agttgccttgtgtgccaaggaacacctgggatgccttcaagctgtggtgt
ttttatgggagcagagaagctggtgatcagttggccagttgccatgtgtg
taggggatcttctggaatatcttcaggctgtggattcagttgccctatgt
gcagtggatctcctgggatgcctcaggctgtggtgtcttcaaggaagcag
cagaattgtgtcataattacattatttgaagtctagatctttgaggcatg
gagatataactttaatctatgtcttttgaggtgggaaaactcacttttaa
tttggacagcacattctggtggctgcttatatatggacaagaatgaagga
ggctgttttctttgtctgctcgctcttaccctcaatgaaaagtccattcc
ctcactagcattagagattacttctttaatattatggtaattactgaaag
cagcagaaacaaatgtattcttcagttattatttacagttaaatacagaa
gttaatattttaagaattattgtatcaatgagaatcaaaggagaaaagta
tgctggctgttcttatgtcaacttgacacacaaattagaattatgtgaaa
gaaggaaacctaagttgataatcatcttataatagtttattttcattcat
gttttgaaagttctagtctagaaatatgcatttcttattgttttcggtcc
cagtgcaattgttcaccttatctcccaggatttgaaacaaagagaaagaa
caggacccagtatcttaggttttatgtctcctgcatgaaacctacattag
aatttatttatttattaaacattttatttaataaatattgattactctca
ccctttcattacttgtttcctgtcacctcccagccccaaattcctttcta
tgatttccagcactgtctacttaaattgtcttgattcttagatttattaa
tgttacacttaatttgtatgtgtgtgtgtgtgccacattaaatatataaa
caaaacctgcccagttatttgttgtttggtatatattggtttagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_37228945_37230036
seq2: B6Ng01-228B13.b_42_1138

seq1  GAATTCAGTACTGGGTTATAACAATTAATGGGAATGAAAGAAGTTTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACTGGGTTATAACAATTAATGGGAATGAAAGAAGTTTAGAG  50

seq1  GGTAGATCTGTATGATCCACTAGAGGTGTGGCCAGGAGAGAGAAGGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATCTGTATGATCCACTAGAGGTGTGGCCAGGAGAGAGAAGGAGAC  100

seq1  TAAAGCATGTGCCTTACTGTAGAACAGGGGATAACACTGGACAATTAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATGTGCCTTACTGTAGAACAGGGGATAACACTGGACAATTAGTG  150

seq1  TTTGAGGAGCTGAGGAGGAGGTAAAGATCTGCAGTTAGCCCATTTGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAGCTGAGGAGGAGGTAAAGATCTGCAGTTAGCCCATTTGCTTC  200

seq1  TCTTGCTGAATGCAGTTCATCAACTTCTGCCACATAAATTTTACAGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGAATGCAGTTCATCAACTTCTGCCACATAAATTTTACAGTAAG  250

seq1  TTCATAAATTTCTTATGACAAAGTTGCAGCAAATTCTATATGTTTTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAATTTCTTATGACAAAGTTGCAGCAAATTCTATATGTTTTATCT  300

seq1  TACTTATAGATTTTATTCATTTATAGAAATAATAAAATAGATTATATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATAGATTTTATTCATTTATAGAAATAATAAAATAGATTATATTTT  350

seq1  ACTTATAGAAGAGGATAGTTCTTTAACTCTATTGAAAATATAAATCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAGAAGAGGATAGTTCTTTAACTCTATTGAAAATATAAATCTGTT  400

seq1  AAATAACTGTATATTTGTTAGATATATAAGGTGGTCAGTAAGTTTTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTGTATATTTGTTAGATATATAAGGTGGTCAGTAAGTTTTTAAT  450

seq1  TTATATTTTAACTCAATATTTAGTATTTTGATTAATATATTCCCAAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTAACTCAATATTTAGTATTTTGATTAATATATTCCCAAGAAT  500

seq1  AGTAGTTTTTCTTTACTGGTGCTATTTAGGATAAAGTTGTATTTTTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTTTTCTTTACTGGTGCTATTTAGGATAAAGTTGTATTTTTACTC  550

seq1  TTATTATTCATAGTATTTTAATGACATATTAAAATATAATTAAGTTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTCATAGTATTTTAATGACATATTAAAATATAATTAAGTTTATA  600

seq1  TTTATTCTTGGCTCATAATACTTATTTTTTTTTTTACTTCCCACAACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTGGCTCATAATACTTATTTTTTTTTTTACTTCCCACAACCCA  650

seq1  GCCTAATTTTTGGCCAATTATTAATGTACTTTGATTTTTTAATTTAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATTTTTGGCCAATTATTAATGTACTTTGATTTTTTAATTTAACAT  700

seq1  GTGAGCTATTTACACTTGTAGCCTCATACTTTCTAAAAAAATTGAACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTATTTACACTTGTAGCCTCATACTTTCTAAAAAAATTGAACTGT  750

seq1  GATAATTCATCTTTTAATTTTTTTAAGTACTAATATTAATGTTTGGTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTCATCTTTTAATTTTTTTAAGTACTAATATTAATGTTTGGTTCT  800

seq1  ATCAAGATCATACACTAACAAAACATCACCGATTTTTCACCTAAATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGATCATACACTAACAAAACATCACCGATTTTTCACCTAAATTAAA  850

seq1  TAATTTTATAT-AAAAAAAGAGCATGTCAAATATCCTCACAATTACAAAA  899
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  TAATTTTATATAAAAAAAAGAGCATGTC-AATATCCTCACAATTACAAAA  899

seq1  CTGAGACTGGAATAGTGG-TTGTTATGATACCAGTTCTTGTAATTCTGAG  948
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGAGACTGGAATAGTGGTTTGTTATGATACCAGTTCTTGTAATTCTGAG  949

seq1  TC-TTGTAGATTACCATGAGTTTGAGATCAATCTAAGCTTCATAGTAATT  997
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAGATTACCATGAGTTTGAGATCAATCTAAGCTTCATAGTAATT  999

seq1  TCCAGG-CTCATCTAGTCTAAAATA--GTATGATTCAGTAAATAAACAAA  1044
      |||||| |||||||||||| |||||   ||||||||||||||||||||||
seq2  TCCAGGCCTCATCTAGTCTTAAATAAGTTATGATTCAGTAAATAAACAAA  1049

seq1  TAAATCCTACAAAGGCAAAAATAAAATAAAATATA--TACTACTGAGAAG  1092
      ||| |||||| |||||||||  |||||||||||||  |||||||| ||||
seq2  TAATTCCTAC-AAGGCAAAATAAAAATAAAATATATTTACTACTG-GAAG  1097


seq1: chr4_37367279_37368336
seq2: B6Ng01-228B13.g_95_1163 (reverse)

seq1  CCTAAAACAATATATACACAAACAACAATAAACTGGGCAGGTTTTGTTTA  50
      |||||| |||||||||| ||||||||||  ||||||||||||||||||||
seq2  CCTAAACCAATATATAC-CAAACAACAAATAACTGGGCAGGTTTTGTTTA  49

seq1  TATATTT-ATGT-GCACACACACACACATACAAA-TAAGTGTAACATTAA  97
      ||||||| |||| ||||||||||||||||||||| |||||||||||||||
seq2  TATATTTAATGTGGCACACACACACACATACAAATTAAGTGTAACATTAA  99

seq1  T-AATCTAAGAATCAAGACAA-TTAAGTAGACAGTGCTGG-AATCATAG-  143
      | ||||||||||||||||||| |||||||||||||||||| |||||||| 
seq2  TAAATCTAAGAATCAAGACAATTTAAGTAGACAGTGCTGGAAATCATAGA  149

seq1  AAGGAA-TTGGGGCTGGGA-GTGACAGG-AACAAGTAATGAAAGGGTGAG  190
      |||||| |||||||||||| |||||||| |||||||||||||||||||||
seq2  AAGGAATTTGGGGCTGGGAGGTGACAGGAAACAAGTAATGAAAGGGTGAG  199

seq1  AGTAATCAATATTTA-TAAATAAAATGTTTAATAAATAAATAAATTCTAA  239
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGTAATCAATATTTATTAAATAAAATGTTTAATAAATAAATAAATTCTAA  249

seq1  TGTAGGTTTCATGCAGGAGACATAAAACCTAAGATACTGGGTCCTGTTCT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTTTCATGCAGGAGACATAAAACCTAAGATACTGGGTCCTGTTCT  299

seq1  TTCTCTTTGTTTCAAATCCTGGGAGATAAGGTGAACAATTGCACTGGGAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGTTTCAAATCCTGGGAGATAAGGTGAACAATTGCACTGGGAC  349

seq1  CGAAAACAATAAG-AATGCATATTTCTAGACTAGAACTTTCAAAACATGA  388
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CGAAAACAATAAGAAATGCATATTTCTAGACTAGAACTTTCAAAACATGA  399

seq1  ATGAAAATAAACTATTATAAGATGATTATCAACTTAGGTTTCCTTCTTTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATAAACTATTATAAGATGATTATCAACTTAGGTTTCCTTCTTTC  449

seq1  ACATAATTCTAATTTGTGTGTCAAGTTGACATAAGAACAGCCAGCATACT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTCTAATTTGTGTGTCAAGTTGACATAAGAACAGCCAGCATACT  499

seq1  TTTCTCCTTTGATTCTCATTGATACAATAATTCTTAAAATATTAACTTCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTTGATTCTCATTGATACAATAATTCTTAAAATATTAACTTCT  549

seq1  GTATTTAACTGTAAATAATAACTGAAGAATACATTTGTTTCTGCTGCTTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAACTGTAAATAATAACTGAAGAATACATTTGTTTCTGCTGCTTT  599

seq1  CAGTAATTACCATAATATTAAAGAAGTAATCTCTAATGCTAGTGAGGGAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTACCATAATATTAAAGAAGTAATCTCTAATGCTAGTGAGGGAA  649

seq1  TGGACTTTTCATTGAGGGTAAGAGCGAGCAGACAAAGAAAACAGCCTCCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTTCATTGAGGGTAAGAGCGAGCAGACAAAGAAAACAGCCTCCT  699

seq1  TCATTCTTGTCCATATATAAGCAGCCACCAGAATGTGCTGTCCAAATTAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTGTCCATATATAAGCAGCCACCAGAATGTGCTGTCCAAATTAA  749

seq1  AAGTGAGTTTTCCCACCTCAAAAGACATAGATTAAAGTTATATCTCCATG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTTTCCCACCTCAAAAGACATAGATTAAAGTTATATCTCCATG  799

seq1  CCTCAAAGATCTAGACTTCAAATAATGTAATTATGACACAATTCTGCTGC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGATCTAGACTTCAAATAATGTAATTATGACACAATTCTGCTGC  849

seq1  TTCCTTGAAGACACCACAGCCTGAGGCATCCCAGGAGATCCACTGCACAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGAAGACACCACAGCCTGAGGCATCCCAGGAGATCCACTGCACAT  899

seq1  AGGGCAACTGAATCCACAGCCTGAAGATATTCCAGAAGATCCCCTACACA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAACTGAATCCACAGCCTGAAGATATTCCAGAAGATCCCCTACACA  949

seq1  CATGGCAACTGGCCAACTGATCACCAGCTTCTCTGCTCCCATAAAAACAC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAACTGGCCAACTGATCACCAGCTTCTCTGCTCCCATAAAAACAC  999

seq1  CACAGCTTGAAGGCATCCCAGGTGTTCCTTGGCACACAAGGCAACTGGGC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTGAAGGCATCCCAGGTGTTCCTTGGCACACAAGGCAACTGGGC  1049

seq1  AATCAATGCCACAGTCTGAA  1058
      ||||||||||||||||||||
seq2  AATCAATGCCACAGTCTGAA  1069


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