BAC Information

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BAC

Clone NameB6Ng01-228I13
Chromosome4 (Build37)
Map Location 136,091,598 - 136,241,876
singlet/doubletdoublet
Overlap geneLuzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2
Upstream gene4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540
Downstream geneC1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228I13.bB6Ng01-228I13.g
ACCGA041922GA041923
length1,142841
definitionB6Ng01-228I13.b B6Ng01-228I13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,091,598 - 136,092,721)(136,241,037 - 136,241,876)
sequence
gaattcctgttgctctgtatcctccatgttagcagtgatttggacatttt
aatagatatgtagtggtgctgagggtctttgttttttgagacaaggtctg
gctgttgatcaagctggcctcaagttgaaggtgcagttctcctgactcag
cttctgagtgccgggataatgagcatgagccaccaggactgcttttggtc
tattgtatttttttcagttctaaatcaacctaatttttccatgcacttat
ttgtaatctgcatatatcctttgttaaggactcatgttgactcatgtttt
tcttactgagattttatatatatgactataccccccccccttttgggttt
ttgttgttgtttgctttttgtttttttgtttttttcgagacagggtttct
ctgtgtaccttggctgtcctggaactcactttgtagaccaggctggtctt
gaactcagaaatccacctgcctctgcttcccaagtgctgggattaaaggt
gcgcgccaccactgcccggaaattttttttttttaaagacaaggtctcta
tatgtatgcagctctaacagtttgcttctgcttcctgtgtgctggaatta
aagttgtataccactgttcctagtattattgctaaaagtattttagttat
tttttttcccctgatatttgttttgcctagatgtctttcaccttaacaag
cttagattattggttctttcctccatggattgtactttttgaaacagtac
ctgaggttactactgtactcagggtcatctggttttttctccttttgatt
tttttttaggagttgatagttttgcattttatacttaagttctgtgcata
tagtctggttatagccccatctatagagaagatgatttttgttgtgtttt
ttgcctttgctcttttctcagaagatccacaggacagcttataatctggg
ctgttttgttcctttatctatctattcttttcaatacttactgctgtgaa
tgataaactttcttagatagatagcatcaaattttgttaatttttaatgt
tatgttagtttctttctggtcatcaaacttctaccaaaactttaccaagt
ttggtcagtatcccaccacaatagttgcctagaagaattttg
gaattcagctggcccaagcccctgccaggaagggacaggctttccccatt
ctccccaggtcttgctggaggccagcaggccccctggccacctgctgcag
gaaagcaggctgcccagcttcccccacctcctctgtgctctgccccctgg
ggctccatctcctggcaagggtcacagggtaccactgaccccatagcctc
ctggcgtgcccgtctgataattgaaaataccagaattcccagatgtccaa
cttccaaggtaacctgacccagcgtgggcgcggcagcaggaggggcccgg
acagcttctagcctgtgccttttctcattgctaatctctggattccgaga
gaggggccagctccccagccagccttgatcatcttcctggcagatctcat
ctcctcaccacgcctgggtcacggggcttaggggctcagagcccaggatc
tgcctgaaacccaagcctgctacagcccagacccttcaagcccgtgggag
ctgccatggctggaggggggtggattggcttcaagactacagtctggagc
ttaggatgtccttacaaaccctctgcagcatccctggtctgccattatcg
ccacaagaaagctgattggccccgagtttgcctgggtttgaatcttggct
ccattgcttgactttcaggcaggtttctccataactcctgagttcatttc
cctcatctgtagagtgggtattataaatgcccaacccacatatgacatgt
gttatctgagttagtgaccctgtgggtgtcagaaccaggcctcctctggg
tgggttatctttgagtccacagggtctccagaaagagagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136091598_136092721
seq2: B6Ng01-228I13.b_48_1189

seq1  GAATTCCTGTTGCTCTGTATCCTCCATGTTAGCAGTGATTTGGACATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTGCTCTGTATCCTCCATGTTAGCAGTGATTTGGACATTTT  50

seq1  AATAGATATGTAGTGGTGCTGAGGGTCTTTGTTTTTTGAGACAAGGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATATGTAGTGGTGCTGAGGGTCTTTGTTTTTTGAGACAAGGTCTG  100

seq1  GCTGTTGATCAAGCTGGCCTCAAGTTGAAGGTGCAGTTCTCCTGACTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGATCAAGCTGGCCTCAAGTTGAAGGTGCAGTTCTCCTGACTCAG  150

seq1  CTTCTGAGTGCCGGGATAATGAGCATGAGCCACCAGGACTGCTTTTGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGTGCCGGGATAATGAGCATGAGCCACCAGGACTGCTTTTGGTC  200

seq1  TATTGTATTTTTTTCAGTTCTAAATCAACCTAATTTTTCCATGCACTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATTTTTTTCAGTTCTAAATCAACCTAATTTTTCCATGCACTTAT  250

seq1  TTGTAATCTGCATATATCCTTTGTTAAGGACTCATGTTGACTCATGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATCTGCATATATCCTTTGTTAAGGACTCATGTTGACTCATGTTTT  300

seq1  TCTTACTGAGATTTTATATATATGACTATACCCCCCCCCCTTTTGGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGAGATTTTATATATATGACTATACCCCCCCCCCTTTTGGGTTT  350

seq1  TTGTTGTTGTTTGCTTTTTGTTTTTTTGTTTTTTTCGAGACAGGGTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTTGCTTTTTGTTTTTTTGTTTTTTTCGAGACAGGGTTTCT  400

seq1  CTGTGTACCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGTCTT  450

seq1  GAACTCAGAAATCCACCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAAATCCACCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGGT  500

seq1  GCGCGCCACCACTGCCCGGAAATTTTTTTTTTTTAAAGACAAGGTCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCCACCACTGCCCGGAAATTTTTTTTTTTTAAAGACAAGGTCTCTA  550

seq1  TATGTATGCAGCTCTAACAGTTTGCTTCTGCTTCCTGTGTGCTGGAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGCAGCTCTAACAGTTTGCTTCTGCTTCCTGTGTGCTGGAATTA  600

seq1  AAGTTGTATACCACTGTTCCTAGTATTATTGCTAAAAGTATTTTAGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTATACCACTGTTCCTAGTATTATTGCTAAAAGTATTTTAGTTAT  650

seq1  TTTTTTTCCCCTGATATTTGTTTTGCCTAGATGTCTTTCACCTTAACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCCCTGATATTTGTTTTGCCTAGATGTCTTTCACCTTAACAAG  700

seq1  CTTAGATTATTGGTTCTTTCCTCCATGGATTGTACTTTTTG-AACAGTAC  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTAGATTATTGGTTCTTTCCTCCATGGATTGTACTTTTTGAAACAGTAC  750

seq1  CTGAGGTTACTACTGTACTCAGGGTCATCTGG-TTTTTCTCCTTTTGATT  798
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGAGGTTACTACTGTACTCAGGGTCATCTGGTTTTTTCTCCTTTTGATT  800

seq1  TTTTTTTAGGAGTTGATAGTTTTGCATTTTATACTTAAG-TCTGTGCATA  847
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTTTTTAGGAGTTGATAGTTTTGCATTTTATACTTAAGTTCTGTGCATA  850

seq1  TAGTCTGGTTATAGCCCCATCTATAGAGAAGATGATTTTTGTTGTGTTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGGTTATAGCCCCATCTATAGAGAAGATGATTTTTGTTGTGTTTT  900

seq1  TTGCCTTTGCTCTTTTCTCAG-AGAT-CACAGGACAGCTTTTAATCTGGG  945
      ||||||||||||||||||||| |||| ||||||||||||| |||||||||
seq2  TTGCCTTTGCTCTTTTCTCAGAAGATCCACAGGACAGCTTATAATCTGGG  950

seq1  CTGTTTTGTTCCTTTATCTATCTATTCTTTTC-ATACTTACTGCTGTGAC  994
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  CTGTTTTGTTCCTTTATCTATCTATTCTTTTCAATACTTACTGCTGTGAA  1000

seq1  TGAT-AACTTTCTTAGATGGATAGCATC-AATTTTGTTAATTTTTAATGT  1042
      |||| ||||||||||||| ||||||||| |||||||||||||||||||||
seq2  TGATAAACTTTCTTAGATAGATAGCATCAAATTTTGTTAATTTTTAATGT  1050

seq1  TATGTTAGTT--CTTCTGGTCATCCAAC-TCTACCAAAACTTTACC-AGT  1088
      ||||||||||   ||||||||||| ||| ||||||||||||||||| |||
seq2  TATGTTAGTTTCTTTCTGGTCATCAAACTTCTACCAAAACTTTACCAAGT  1100

seq1  TT-GTCAGTATCC--ACACAATAGTTG-CTAGA--GATTTTG  1124
      || ||||||||||   ||||||||||| |||||   ||||||
seq2  TTGGTCAGTATCCCACCACAATAGTTGCCTAGAAGAATTTTG  1142

seq1: chr4_136241037_136241876
seq2: B6Ng01-228I13.g_70_910 (reverse)

seq1  AGCTCTCTTTCCTGGAGACCCTGTGGACTC-AAGAT-ACCCACCCAGAGG  48
      |||||||||| ||||||||||||||||||| ||||| |||||||||||||
seq2  AGCTCTCTTT-CTGGAGACCCTGTGGACTCAAAGATAACCCACCCAGAGG  49

seq1  AGGCCCTGGTTTCTGACACCCACAGGGTCACTAACTCAGATAACACATGT  98
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGG-CCTGG-TTCTGACACCCACAGGGTCACTAACTCAGATAACACATGT  97

seq1  CATCTGTGGGTTGGGCATTTATAATACCCACTCTACAGATGAGGG-AATG  147
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATATGTGGGTTGGGCATTTATAATACCCACTCTACAGATGAGGGAAATG  147

seq1  AACTCAGGAGTTATGGAGAAACCTGCCTG-AAGTCAAGCAATGGAGCCAA  196
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACTCAGGAGTTATGGAGAAACCTGCCTGAAAGTCAAGCAATGGAGCCAA  197

seq1  GATTCAAACCCAGGCAAACTCGGGGCCAATCAGCTTTCTTGTGGCGATAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAACCCAGGCAAACTCGGGGCCAATCAGCTTTCTTGTGGCGATAA  247

seq1  TGGCAGACCAGGGATGCTGCAGAGGGTTTGTAAGGACATCCTAAGCTCCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGACCAGGGATGCTGCAGAGGGTTTGTAAGGACATCCTAAGCTCCA  297

seq1  GACTGTAGTCTTGAAGCCAATCCACCCCCCTCCAGCCATGGCAGCTCCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAGTCTTGAAGCCAATCCACCCCCCTCCAGCCATGGCAGCTCCCA  347

seq1  CGGGCTTGAAGGGTCTGGGCTGTAGCAGGCTTGGGTTTCAGGCAGATCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTTGAAGGGTCTGGGCTGTAGCAGGCTTGGGTTTCAGGCAGATCCT  397

seq1  GGGCTCTGAGCCCCTAAGCCCCGTGACCCAGGCGTGGTGAGGAGATGAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGAGCCCCTAAGCCCCGTGACCCAGGCGTGGTGAGGAGATGAGA  447

seq1  TCTGCCAGGAAGATGATCAAGGCTGGCTGGGGAGCTGGCCCCTCTCTCGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGGAAGATGATCAAGGCTGGCTGGGGAGCTGGCCCCTCTCTCGG  497

seq1  AATCCAGAGATTAGCAATGAGAAAAGGCACAGGCTAGAAGCTGTCCGGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGAGATTAGCAATGAGAAAAGGCACAGGCTAGAAGCTGTCCGGGC  547

seq1  CCCTCCTGCTGCCGCGCCCACGCTGGGTCAGGTTACCTTGGAAGTTGGAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGCTGCCGCGCCCACGCTGGGTCAGGTTACCTTGGAAGTTGGAC  597

seq1  ATCTGGGAATTCTGGTATTTTCAATTATCAGACGGGCACGCCAGGAGGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGAATTCTGGTATTTTCAATTATCAGACGGGCACGCCAGGAGGCT  647

seq1  ATGGGGTCAGTGGTACCCTGTGACCCTTGCCAGGAGATGGAGCCCCAGGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTCAGTGGTACCCTGTGACCCTTGCCAGGAGATGGAGCCCCAGGG  697

seq1  GGCAGAGCACAGAGGAGGTGGGGGAAGCTGGGCAGCCTGCTTTCCTGCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCACAGAGGAGGTGGGGGAAGCTGGGCAGCCTGCTTTCCTGCAG  747

seq1  CAGGTGGCCAGGGGGCCTGCTGGCCTCCAGCAAGACCTGGGGAGAATGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCCAGGGGGCCTGCTGGCCTCCAGCAAGACCTGGGGAGAATGGG  797

seq1  GAAAGCCTGTCCCTTCCTGGCAGGGGCTTGGGCCAGCTGAATTC  840
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTGTCCCTTCCTGGCAGGGGCTTGGGCCAGCTGAATTC  841