BAC Information

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BAC

Clone NameB6Ng01-228L24
Chromosome4 (Build37)18 (Build37)
Map Location 24,421,538 - 24,422,40234,286,298 - 34,286,479
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383998, LOC100040464, LOC623873, LOC664973
Downstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228L24.bB6Ng01-228L24.g
ACCGA042088GA042089
length870206
definitionB6Ng01-228L24.b B6Ng01-228L24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,421,538 - 24,422,402)(34,286,298 - 34,286,479)
sequence
gaattcttccccttctaatgaaagcagctcctaatttcactgtagttaca
caatatacttcgtatgttttcaacctttttttagcttttgtgaatgaaat
gcagagacttatacacactatacaaatgttctaccactatacttcactgg
tagccttcaatcctttttaaatagataaaatttgtttcatgattctgaat
ataatctggtttcatgttccatgttttctttttaattgtataattttact
gttagcgtagtcatatgcatcaattagattcaactgggagctagtactat
ccaaatcttttatagccgtattaattttctattgtcaattattatcaatt
gcagagacatttcaattttctaattaagattgttaggtggatgtggtgat
gaatgcttgtagtctaagctacttgagaggttaagacaagaagactagga
aattgggggcagctggacaaaataccagcatttcatctttacaaaacaat
attatttgaatatttctgttgtaacagtattatgttatattaataaatat
ataatagctatttctatctatggaagcttatacttaagttcttaacattt
ctatatcttgtcaaaattaagataaaaataattacaattttgtctgattc
aaagaagagtctctaacttctctttagttcttttcatttctaacctggac
tacatacacttgataggctacacccttgctttgcgctttggttttgtttt
ggccgacaggagtgaaacatgggatgtggtttactcctttcagtgtttcc
cccactttgtctgtggtgggacagtttgtgttttgtctgtgaaggcaacc
actgttgttgtgacgatagg

cattcttagaatccaagtaaaaataaaccaggtctgggttcagatactct
gtcgtcccagtgttgggaagtgacaggaaggcaagcagatcctggtgttt
gctagcaagtcagccccttgtctacttgtgctccaagtcattaagagaat
ctgtcacaaaaagaaaagaaaaggaagagaagggaagggaggggaaggga
agggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_24421538_24422402
seq2: B6Ng01-228L24.b_49_918

seq1  GAATTCTTCCCCTTCTAATGAAAGCAGCTCCTAATTTCACTGTAGTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCCTTCTAATGAAAGCAGCTCCTAATTTCACTGTAGTTACA  50

seq1  CAATATACTTCGTATGTTTTCAACCTTTTTTTAGCTTTTGTGAATGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATACTTCGTATGTTTTCAACCTTTTTTTAGCTTTTGTGAATGAAAT  100

seq1  GCAGAGACTTATACACACTATACAAATGTTCTACCACTATACTTCACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACTTATACACACTATACAAATGTTCTACCACTATACTTCACTGG  150

seq1  TAGCCTTCAATCCTTTTTAAATAGATAAAATTTGTTTCATGATTCTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTCAATCCTTTTTAAATAGATAAAATTTGTTTCATGATTCTGAAT  200

seq1  ATAATCTGGTTTCATGTTCCATGTTTTCTTTTTAATTGTATAATTTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGGTTTCATGTTCCATGTTTTCTTTTTAATTGTATAATTTTACT  250

seq1  GTTAGCGTAGTCATATGCATCAATTAGATTCAACTGGGAGCTAGTACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCGTAGTCATATGCATCAATTAGATTCAACTGGGAGCTAGTACTAT  300

seq1  CCAAATCTTTTATAGCCGTATTAATTTTCTATTGTCAATTATTATCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTTTTATAGCCGTATTAATTTTCTATTGTCAATTATTATCAATT  350

seq1  GCAGAGACATTTCAATTTTCTAATTAAGATTGTTAGGTGGATGTGGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACATTTCAATTTTCTAATTAAGATTGTTAGGTGGATGTGGTGAT  400

seq1  GAATGCTTGTAGTCTAAGCTACTTGAGAGGTTAAGACAAGAAGACTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTGTAGTCTAAGCTACTTGAGAGGTTAAGACAAGAAGACTAGGA  450

seq1  AATTGGGGGCAGCTGGACAAAATACCAGCATTTCATCTTTACAAAACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGGGCAGCTGGACAAAATACCAGCATTTCATCTTTACAAAACAAT  500

seq1  ATTATTTGAATATTTCTGTTGTAACAGTATTATGTTATATTAATAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGAATATTTCTGTTGTAACAGTATTATGTTATATTAATAAATAT  550

seq1  ATAATAGCTATTTCTATCTATGGAAGCTTATACTTAAGTTCTTAACATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCTATTTCTATCTATGGAAGCTTATACTTAAGTTCTTAACATTT  600

seq1  CTATATCTTGTCAAAATTAAGATAAAAATAATTACAATTTTGTCTGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCTTGTCAAAATTAAGATAAAAATAATTACAATTTTGTCTGATTC  650

seq1  AAAGAAGAGTCTCTAACTTCTCTTTAGTTCTTTTCATTTCTAACCTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAGTCTCTAACTTCTCTTTAGTTCTTTTCATTTCTAACCTGGAC  700

seq1  TACATACACTTGATAGGCTACACCCTTGCTTTGCGCTTTGG-TTTGTTTT  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TACATACACTTGATAGGCTACACCCTTGCTTTGCGCTTTGGTTTTGTTTT  750

seq1  GGCCGACAGGAGTGAAACATGGGATGTGGTTTACTCCTTTCAGTGTTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGACAGGAGTGAAACATGGGATGTGGTTTACTCCTTTCAGTGTTTCC  800

seq1  CCCAC-TTGTCTGTGGTGGGACAG-TTGTG-TTTGTCTGTGAAGGCAACC  846
      ||||| |||||||||||||||||| ||||| |||||||||||||||||||
seq2  CCCACTTTGTCTGTGGTGGGACAGTTTGTGTTTTGTCTGTGAAGGCAACC  850

seq1  ACTGTTG-TGTGACGATAAG  865
      ||||||| |||||||||| |
seq2  ACTGTTGTTGTGACGATAGG  870


seq1: chr18_34286298_34286479
seq2: B6Ng01-228L24.g_230_278 (reverse)

seq1  TTCCCTTCCCTCCCCTCCCCTTCCCTTCCCTCCGCTTCCCTTCTCACCCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCCTCCCCTTCTCACCCCACCCCTCCCCTCCCTTTCCCTCCCTTCCCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCATCCCTCCCTTCCTCTACTCTCCCCTCCCTTCCCTTCCCTTCCCTT  150
                                       ||||||||||||||| |
seq2  ---------------------------------TTCCCTTCCCTTCCCCT  17

seq1  CCCTTCCCTTCCTTTCCTTTTCTTTTCTTTTT  182
      |||||||||||  |||||||||||||||||||
seq2  CCCTTCCCTTCTCTTCCTTTTCTTTTCTTTTT  49


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