BAC Information

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BAC

Clone NameB6Ng01-229C01
Chromosome4 (Build37)10 (Build37)
Map Location 6,530,617 - 6,531,13116,739,196 - 16,740,321
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneTox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229C01.bB6Ng01-229C01.g
ACCGA042360GA042361
length9191,145
definitionB6Ng01-229C01.b B6Ng01-229C01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,530,617 - 6,531,131)(16,739,196 - 16,740,321)
sequence
gaattcttttttttttttttttttttcattttttttttaattaggtattt
agctcatttacatttccaatgctataccaaaagtcccccttacccaccca
cccccactcccctacccacccactcccccccctttggccctggcgttccc
ctgtaccggggcacacaaagtctgcatgtccaatgggcctctctttccag
tgatggccgactaggccatcttttgatacatatgcagctagagtcaagag
ctcaggggtactggttagttcataatgttgttccacctatagggttgaag
atccctttagctccttgggtactttctctagctcctccattgggagccct
gtgatccatccattagctgactgtgagcatccacttctgtgtttgctagg
ccccggcatagtctcacaagagacagctacatctgggtcctttcagtaaa
atcttgctagtgtatgcaatggtgtcagcatttggaagctgattatgggg
tggatccctggatatggcagtctctacatggtccatcctttcatctcagc
tccatactttgtttctgtaactccttccatgggtgttttgttcccacttc
taaggaggggcatagtgtccacacttcagtcttcatttttcttgagtttc
atgtgtttaggaaattgtatcttatatcgtgggtatcctaggttttgggc
tagtatccacttatcagtgagtacatattgtgtgagttcctttgcgattg
tgttacctcactcaggatgatgctctccaggtcccatccatttggctagg
aatttcataaacttcattctttttaatagctgagtagtactccattgtgt
agaatgtaccacaattttctgtatccattcctctgttgaggggcatctgg
gttctttccagtttcctgg

gaattcaatatagggaaggtttttatttcttctgtccaaactaccatatt
tttggagcatatcgttggtagatttccatgctctcggttttctgggactg
caacagaagctttggagccagtctgtttgtgttttattcttttcatttgt
ttggttaattgtctgtaatgaagcgggcatgaaatgtacactcaaattca
tgcattaaacatccgtgacacaaaggacatctccagtgtccttaatcatt
aatgagcttagtaccgagtttcacttgtgagagtagtgctaagtttcaat
gtcctacagcgagtaaatgcagcgatatcttcccagggaaatgggatgga
aggttatggactagtcctggaactgccaggacattggtttctatacctta
catatcactactctttggtaaaggatataattacttagccctagaacagt
attcaacataaattcctgggaaagcctaatgtaggtttttttgaattcgt
gaaatttttgtaacactatgtttcccctttttcgtatgaatcgtaattca
ctgtaaatattaagagacttgagtatatgcaatgcttattttgatgatgt
ctctgaagaactctgtatatattttttcttaaaatgtttcttagtttctt
gaaaggactcacatatatagctgtagttttttcaccatgaaattcaagaa
gagtaagtctctaatttgtggatcatctgaagaaaacatgtattataaga
gtagagcaagcacaaacagcagacagactatcggcaaatcgagcccatca
cctgggtttgactagtattaactgaactgtggccacacctatttgttttt
ctgttgctactggggaggtttcacactaaaaatggcagagctaaaataga
ttggggacataattcattttggatttacaaaattcaacactacaaatagt
tccctctgatcctacctcaacctaagcttgtaaagtaaataacctgtaag
catcttacagggttttcccaatgaacaataggaataggtagatattaaac
taacctttattcaatctatgcaaccagcatagttttcattatgaaaagaa
cctcctaattcttggataagtaccttcggaaacctcctaattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6530617_6531131
seq2: B6Ng01-229C01.b_42_555

seq1  GAATTCTTTTTTTTTTTATTTTTCTTTTTTTTTCCATTTTTATTAGGTAT  50
      ||||||||||||||||| ||||| ||  |||||   |||| |||||||||
seq2  GAATTCTTTTTTTTTTTTTTTTTTTTCATTTTT--TTTTTAATTAGGTAT  48

seq1  TTAGCTCATTTACATTTCTAATGCTATACCAAAAGTCCCCCATACCCACC  100
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  TTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCTTACCCACC  98

seq1  CACCCCCACTCCCCTACCCACCCACT-TCCCCTTTTTGGCCCTGGCATTC  149
      ||||||||||||||||||||||||||  ||||  |||||||||||| |||
seq2  CACCCCCACTCCCCTACCCACCCACTCCCCCCCCTTTGGCCCTGGCGTTC  148

seq1  CCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCC  199
      |||||||| |||||| | ||||| ||| ||||||||||||||||||||||
seq2  CCCTGTACCGGGGCACACAAAGTCTGCATGTCCAATGGGCCTCTCTTTCC  198

seq1  AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG  248

seq1  AGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGC  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCTCAGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGA  298

seq1  AGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCC  348

seq1  CTGTGATCCATCCATTAGCTGACTGTGAGCATTCACTTCTGTGTTTGCTA  399
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTA  398

seq1  GGCCCTGGCATAGTGTCACAAGAGACAGCTACATCTGGGTCCTTTCTATA  449
      ||||| |||||||| |||||||||||||||||||||||||||||||  ||
seq2  GGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAGTA  448

seq1  AAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGG  499
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  AAATCTTGCTAGTGTATGCAATGGTGTCAGCATTTGGAAGCTGATTATGG  498

seq1  GGTGGATCCTTGGATA  515
      ||||||||| ||||||
seq2  GGTGGATCCCTGGATA  514


seq1: chr10_16739196_16740321
seq2: B6Ng01-229C01.g_67_1211

seq1  GAATTCAATATAGGGAAGGTTTTTATTTCTTCTGTCCAAACTACCATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATAGGGAAGGTTTTTATTTCTTCTGTCCAAACTACCATATT  50

seq1  TTTGGAGCATATCGTTGGTAGATTTCCATGCTCTCGGTTTTCTGGGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGCATATCGTTGGTAGATTTCCATGCTCTCGGTTTTCTGGGACTG  100

seq1  CAACAGAAGCTTTGGAGCCAGTCTGTTTGTGTTTTATTCTTTTCATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAGCTTTGGAGCCAGTCTGTTTGTGTTTTATTCTTTTCATTTGT  150

seq1  TTGGTTAATTGTCTGTAATGAAGCGGGCATGAAATGTACACTCAAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAATTGTCTGTAATGAAGCGGGCATGAAATGTACACTCAAATTCA  200

seq1  TGCATTAAACATCCGTGACACAAAGGACATCTCCAGTGTCCTTAATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAAACATCCGTGACACAAAGGACATCTCCAGTGTCCTTAATCATT  250

seq1  AATGAGCTTAGTACCGAGTTTCACTTGTGAGAGTAGTGCTAAGTTTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCTTAGTACCGAGTTTCACTTGTGAGAGTAGTGCTAAGTTTCAAT  300

seq1  GTCCTACAGCGAGTAAATGCAGCGATATCTTCCCAGGGAAATGGGATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACAGCGAGTAAATGCAGCGATATCTTCCCAGGGAAATGGGATGGA  350

seq1  AGGTTATGGACTAGTCCTGGAACTGCCAGGACATTGGTTTCTATACCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATGGACTAGTCCTGGAACTGCCAGGACATTGGTTTCTATACCTTA  400

seq1  CATATCACTACTCTTTGGTAAAGGATATAATTACTTAGCCCTAGAACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACTACTCTTTGGTAAAGGATATAATTACTTAGCCCTAGAACAGT  450

seq1  ATTCAACATAAATTCCTGGGAAAGCCTAATGTAGGTTTTTTTGAATTCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACATAAATTCCTGGGAAAGCCTAATGTAGGTTTTTTTGAATTCGT  500

seq1  GAAATTTTTGTAACACTATGTTTCCCCTTTTTCGTATGAATCGTAATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTTGTAACACTATGTTTCCCCTTTTTCGTATGAATCGTAATTCA  550

seq1  CTGTAAATATTAAGAGACTTGAGTATATGCAATGCTTATTTTGATGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATATTAAGAGACTTGAGTATATGCAATGCTTATTTTGATGATGT  600

seq1  CTCTGAAGAACTCTGTATATATTTTTTCTTAAAATGTTTCTTAGTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGAACTCTGTATATATTTTTTCTTAAAATGTTTCTTAGTTTCTT  650

seq1  GAAAGGACTCACATATATAGCTGTAGTTTTTTCACCATGAAATTCAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACTCACATATATAGCTGTAGTTTTTTCACCATGAAATTCAAGAA  700

seq1  GAGTAAGTCTCTAATTTGTGGATCATCTGAAGAAAACATGTATTATAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGTCTCTAATTTGTGGATCATCTGAAGAAAACATGTATTATAAGA  750

seq1  GTAGAGCAAGCACAAACAGCAGACAGACTATCGGCAAATCGAGCCCATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCAAGCACAAACAGCAGACAGACTATCGGCAAATCGAGCCCATCA  800

seq1  CCTGGGTTTGACTAGTATTAACTGAACTGTGGCCACACCTATTTGTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTTGACTAGTATTAACTGAACTGTGGCCACACCTATTTGTTTTT  850

seq1  CTGTTGCTACT-GGGAGGTTTCACACTAAAAATGGCAGAGCT-AAATAGA  898
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  CTGTTGCTACTGGGGAGGTTTCACACTAAAAATGGCAGAGCTAAAATAGA  900

seq1  T--GGGACAT-ATTCATTTTTGATTTAC-AAATTCAACACTACATATAGT  944
      |  ||||||| ||||||||| ||||||| ||||||||||||||| |||||
seq2  TTGGGGACATAATTCATTTTGGATTTACAAAATTCAACACTACAAATAGT  950

seq1  T-CCTCTGAT-CTAACTCAACCTAAGC-TGTAAAGTAAAT-ACCTGT-AG  989
      | |||||||| ||| |||||||||||| |||||||||||| |||||| ||
seq2  TCCCTCTGATCCTACCTCAACCTAAGCTTGTAAAGTAAATAACCTGTAAG  1000

seq1  CATTCTACA-GGTTTTCCC-ATG-ACAATAGG-ATA-GTAGATA-TAAAC  1033
      |||  |||| ||||||||| ||| |||||||| ||| ||||||| |||||
seq2  CATCTTACAGGGTTTTCCCAATGAACAATAGGAATAGGTAGATATTAAAC  1050

seq1  TAACC-TTAATCAATCTA-GCAA-CAGCATATTTTTAATTATGAAAAG-A  1079
      ||||| ||| |||||||| |||| ||||||| |||| ||||||||||| |
seq2  TAACCTTTATTCAATCTATGCAACCAGCATAGTTTTCATTATGAAAAGAA  1100

seq1  CCTCTTAATTTTTGATAAAGTACCTTCTGAAAACTTCCTTAATTCTT  1126
      |||| ||||| |||   |||||||||| |||| ||  | ||||||||
seq2  CCTCCTAATTCTTGGATAAGTACCTTCGGAAACCT--CCTAATTCTT  1145


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