BAC Information

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BAC

Clone NameB6Ng01-229M03
Chromosome4 (Build37)
Map Location 48,292,026 - 48,442,613
singlet/doubletdoublet
Overlap geneTxndc4, Invs
Upstream geneCol15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b, LOC100040788, Nr4a3, Stx17
Downstream geneTex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229M03.bB6Ng01-229M03.g
ACCGA042802GA042803
length4791,120
definitionB6Ng01-229M03.b B6Ng01-229M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,442,129 - 48,442,613)(48,292,026 - 48,293,151)
sequence
cacactggttctgatcttcctccagggttaaagctttggcttgttttttg
attgactggatggttgcagattgtaagagaacttctttgatcttccactg
ttgtcaagatgtatagactgcaaactgttcactgttaaaagcaaatgtat
atttatattattgatcttaatggaggagaggagttgtttgtggtaagata
aaaggatttgggatgacactctccctggtgatgacgagctcttcctcacc
ttactgacagggcatctctttaaagcaggaactggactgggaggggttgt
aagtggacgctacatcttgagtgggtaggagggtaatacagcatccttct
ctgcatgcctttcacatggcacatggtttatacacagcttagaattcttt
tgccacatacttttataagtcaacaaaaaaagttttagggatgacataga
taggaatcttggggtgggttttttgtttt
gaattctcctatttgcaggttccaagccctgactgtgctttcgcaggcct
tgtggaccgcaggcttaaggagccaaaagaacggccaaagtgaaggtagt
gcccgggggtgcacgcctcgccagcggaggagagtcgaggcaagcagggg
gctgcaccgttccccctcgcggagggcgggaggcgttcagggacacagtc
ggagggtttgtcaccccgacatacactcaccaggagcagcaaggagcatc
tgaggtctgctaaagacaggaagaccgcaggattcatggtaacgacgggg
tcgacggcggggtcaggaggtggcggctgggactggaccgggctagaaaa
gggctgggctccggggccggcggcagcggcacctcgtcctctcgacccgg
agctccagcggcgaacacccgggacaacttccagagaggcctctcacgcc
ctcacttccgggtcctgcccatctcgaagcacgtcgggaaatgtagtcca
tactgtagtttcattgaccatgtcatcggagagctgggactctctttccc
agtaagccctgtgcccacgacggccaagccatctgtgcgcggggctcttc
gggattggaagggaccgcgtacctctgtgcctccgggacgggaactacaa
ttcccagagggctgtgcagcctggagccccaggctacttcttcagagctc
ccgggctctagtgtcctggggtctgttcctgtgggcgcagtggcctggct
tggcggtaggggcggccccgtgagggttgtgcctcctggggcggccccgg
gacgccattcttggagtcaggggtgagtaggaagcggtccagcatcggcg
gctcgggtaggatggagagcaccgccccgggctgctgctgcgttttcttg
gcccgcctgatctgaggtgtggcctgagcctccatccctggcctcaagct
gctgctcttctttctgtgctacttcttcggtatataggagaatcacactg
gggcttcggtcatcacttaccaaggtgtttcagaggtccggtgaaccgaa
gagaacagggatggcaaaggcatgctgtaactgttaagcgccagtgccca
gtggcccggtgaccacttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_48442129_48442613
seq2: B6Ng01-229M03.b_43_527 (reverse)

seq1  AAAACAAAAAACCCACCCCAAGATTCCTATCTATGTCATCCCTAAAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAACCCACCCCAAGATTCCTATCTATGTCATCCCTAAAACTT  50

seq1  TTTTTGTTGACTTATAAAAGTATGTGGCAAAAGAATTCTAAGCTGTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGACTTATAAAAGTATGTGGCAAAAGAATTCTAAGCTGTGTAT  100

seq1  AAACCATGTGCCATGTGAAAGGCATGCAGAGAAGGATGCTGTATTACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATGTGCCATGTGAAAGGCATGCAGAGAAGGATGCTGTATTACCCT  150

seq1  CCTACCCACTCAAGATGTAGCGTCCACTTACAACCCCTCCCAGTCCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCACTCAAGATGTAGCGTCCACTTACAACCCCTCCCAGTCCAGTT  200

seq1  CCTGCTTTAAAGAGATGCCCTGTCAGTAAGGTGAGGAAGAGCTCGTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTAAAGAGATGCCCTGTCAGTAAGGTGAGGAAGAGCTCGTCATC  250

seq1  ACCAGGGAGAGTGTCATCCCAAATCCTTTTATCTTACCACAAACAACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGAGAGTGTCATCCCAAATCCTTTTATCTTACCACAAACAACTCC  300

seq1  TCTCCTCCATTAAGATCAATAATATAAATATACATTTGCTTTTAACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCATTAAGATCAATAATATAAATATACATTTGCTTTTAACAGTG  350

seq1  AACAGTTTGCAGTCTATACATCTTGACAACAGTGGAAGATCAAAGAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTTGCAGTCTATACATCTTGACAACAGTGGAAGATCAAAGAAGTT  400

seq1  CTCTTACAATCTGCAACCATCCAGTCAATCAAAAAACAAGCCAAAGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACAATCTGCAACCATCCAGTCAATCAAAAAACAAGCCAAAGCTTT  450

seq1  AACCCTGGAGGAAGATCAGAACCAGTGTGGAATTC  485
      |||||||||||||||||||||||||||||||||||
seq2  AACCCTGGAGGAAGATCAGAACCAGTGTGGAATTC  485

seq1: chr4_48292026_48293151
seq2: B6Ng01-229M03.g_66_1185

seq1  GAATTCTCCTATTTGCAGGTTCCAAGCCCTGACTGTGCTTTCGCAGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTATTTGCAGGTTCCAAGCCCTGACTGTGCTTTCGCAGGCCT  50

seq1  TGTGGACCGCAGGCTTAAGGAGCCAAAAGAACGGCCAAAGTGAAGGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACCGCAGGCTTAAGGAGCCAAAAGAACGGCCAAAGTGAAGGTAGT  100

seq1  GCCCGGGGGTGCACGCCTCGCCAGCGGAGGAGAGTCGAGGCAAGCAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGGGTGCACGCCTCGCCAGCGGAGGAGAGTCGAGGCAAGCAGGGG  150

seq1  GCTGCACCGTTCCCCCTCGCGGAGGGCGGGAGGCGTTCAGGGACACAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCGTTCCCCCTCGCGGAGGGCGGGAGGCGTTCAGGGACACAGTC  200

seq1  GGAGGGTTTGTCACCCCGACATACACTCACCAGGAGCAGCAAGGAGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTTTGTCACCCCGACATACACTCACCAGGAGCAGCAAGGAGCATC  250

seq1  TGAGGTCTGCTAAAGACAGGAAGACCGCAGGATTCATGGTAACGACGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCTGCTAAAGACAGGAAGACCGCAGGATTCATGGTAACGACGGGG  300

seq1  TCGACGGCGGGGTCAGGAGGTGGCGGCTGGGACTGGACCGGGCTAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACGGCGGGGTCAGGAGGTGGCGGCTGGGACTGGACCGGGCTAGAAAA  350

seq1  GGGCTGGGCTCCGGGGCCGGCGGCAGCGGCACCTCGTCCTCTCGACCCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGCTCCGGGGCCGGCGGCAGCGGCACCTCGTCCTCTCGACCCGG  400

seq1  AGCTCCAGCGGCGAACACCCGGGACAACTTCCAGAGAGGCCTCTCACGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGCGGCGAACACCCGGGACAACTTCCAGAGAGGCCTCTCACGCC  450

seq1  CTCACTTCCGGGTCCTGCCCATCTCGAAGCACGTCGGGAAATGTAGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCCGGGTCCTGCCCATCTCGAAGCACGTCGGGAAATGTAGTCCA  500

seq1  TACTGTAGTTTCATTGACCATGTCATCGGAGAGCTGGGACTCTCTTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGTTTCATTGACCATGTCATCGGAGAGCTGGGACTCTCTTTCCC  550

seq1  AGTAAGCCCTGTGCCCACGACGGCCAAGCCATCTGTGCGCGGGGCTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCCCTGTGCCCACGACGGCCAAGCCATCTGTGCGCGGGGCTCTTC  600

seq1  GGGATTGGAAGGGACCGCGTACCTCTGTGCCTCCGGGACGGGAACTACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGAAGGGACCGCGTACCTCTGTGCCTCCGGGACGGGAACTACAA  650

seq1  TTCCCAGAGGGCTGTGCAGCCTGGAGCCCCAGGCTACTTCTTCAGAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAGGGCTGTGCAGCCTGGAGCCCCAGGCTACTTCTTCAGAGCTC  700

seq1  CCGGGCTCTAGTGTCCTGGGGTCTGTTCCTGTGGGCGCAGTGGCCTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCTCTAGTGTCCTGGGGTCTGTTCCTGTGGGCGCAGTGGCCTGGCT  750

seq1  TGGCGGTAGGGGCGGCCCCGTGAGGGTTGTGCCTCCTGGGGCGGCCCCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGTAGGGGCGGCCCCGTGAGGGTTGTGCCTCCTGGGGCGGCCCCGG  800

seq1  GACGCCATTCTTGGAGTCAGGGGTGAGTAGGAAGCGGTCCAGCATCGGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCATTCTTGGAGTCAGGGGTGAGTAGGAAGCGGTCCAGCATCGGCG  850

seq1  GCTCGGGTAGGATGGAGAGCACCGCCCCGGGCTGCTGCTGCGTTTTCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGGTAGGATGGAGAGCACCGCCCCGGGCTGCTGCTGCGTTTTCTTG  900

seq1  GCCCGCCTGATCTGAGGTGTGGCCTGAGCCTCCATCCCTGGCCTCCAAGC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCCCGCCTGATCTGAGGTGTGGCCTGAGCCTCCATCCCTGGCCT-CAAGC  949

seq1  TGCTGCCTCTTCTTTCTGTGCTACTTCCTCCGTTATATAAGGAGAATCAC  1000
      ||||| |||||||||||||||||||| || || ||||| |||||||||| 
seq2  TGCTG-CTCTTCTTTCTGTGCTACTT-CTTCGGTATAT-AGGAGAATCA-  995

seq1  CACTGGGGCTTCGGTCAATCACTTACCCAGGGTTGTTTCAGAGGGTCCGT  1050
      |||||||||||||||| |||||||||| |||  |||||||||||  | ||
seq2  CACTGGGGCTTCGGTC-ATCACTTACCAAGG--TGTTTCAGAGGTCCGGT  1042

seq1  GAAACGAAGAGAACAGGGATGGGAAA-GCATGCTGTAAACTGTAAAGCG-  1098
      ||| |||||||||||||||||| ||| ||||||||| |||||| ||||| 
seq2  GAACCGAAGAGAACAGGGATGGCAAAGGCATGCTGT-AACTGTTAAGCGC  1091

seq1  CAGTGCCCAAGTGGCC--GTGACCACTTCT  1126
      |||||||| |||||||  ||||||||||||
seq2  CAGTGCCC-AGTGGCCCGGTGACCACTTCT  1120