BAC Information

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BAC

Clone NameB6Ng01-230L19
Chromosome4 (Build37)
Map Location 147,049,452 - 147,111,767
singlet/doubletdoublet
Overlap geneLOC100043100, LOC666640, LOC194189
Upstream geneMGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618
Downstream geneLOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230L19.bB6Ng01-230L19.g
ACCGA043525GA043526
length1,1631,130
definitionB6Ng01-230L19.b B6Ng01-230L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,049,452 - 147,050,615)(147,110,602 - 147,111,767)
sequence
gaattctctgatgaattctcagactggttctatcagtaaagcatttgcca
cattcactgcatttgtaaggtttctctcctgtatgaattctctgatgcat
agtaagattgaatttgtttttaaaacatttgtcacattcactacatttgt
aaattttctcttctgtatgaattccctgatgaatactaagatggatctga
tgggtaaagcatttgtcacttttactacttttgtaaggtttctttccatg
ataaattctctgctgactttgtagtttttctctctgggtaagatatttgt
gaaattcactacatttgtaagggttccctgcaatattgtcttttttcacc
atgactttatgtttagaaacaaaaatcttgtctaattctgcatttcggtt
gtgttttttcttctgcatgttaattccttgattgagactaatggtagaaa
acaaacttaaactgtttacagagtcattgtatttgcaaacttctttagtg
ttcctgggcttaagtcttttttgggtcgagaattgaagagcatcagagct
gtgattagttttgtaaggtgtacactggagggattcaagaatgacattgc
taaacttgtcccatttagaagacttctcttgaatattcatgtgttcatgg
acaatgtactggctgtcttgatccaataccttcccattctttccacgtat
gcaatgattttctgaaaaaaaagggggggcaattagaggtgacatgaatt
acttatataaggagtaagggactcaataatcagtgagcttatggattcgt
actctcaagaaaggtttctctctctctctctctctctctctctctctctc
tctctgtgaatcattacattgtatcctcagaagaaccttcaaatatgatc
ttttatcaaatgactggaaatgataatacccctgcttaaattgttatttt
caaattagacatcatacccacccttcaaattataataacccagaattgct
ccaaaagaagtgacatgattgttgtacctccactgattagtgatattagc
ccagaaccttagaatacccagaatattatcatacatttgtgaacaccatg
acacttcaagaagaccgagaccaaagtatggaccaccttgcccttcttta
gattgggtaaaaa
gaattcaaaactacaaatcggctgttgctaacaggcacgcctctccagac
ctgcatgagctctggtcacttctaaactttttgttaccagatgtgtttaa
ttcagctgatgactttgattcctggtttgatacaaataattgccttgggg
atcaaaagctagttgagaggcttcatatggttttgtgtccattcctcctt
cgtcgaattaaagctgatgttgaaaagagtttgcctccaaaaaaagaagt
aaaaatctatgtgagtcttagcaaaatgcaaagacaatggtatactcgga
tattaataaagatatagacatgttaaactcagcagggaagatggacaaaa
tgaggctattgaacattttgatgcagttgaggaaatgctgcaatcatccg
taactcttcgatggagctgaacctggtccactgtacacaacagatacgca
tctagttaccaacagtggcaagatggtggtgttagacaagctactcccta
aactgaaagaacaaggttcaagagtactaatctttagtcagatgacaaga
gtattagacattttggaagattattgcatgtggagaaattatgagtactg
caggttggatgaacagacaccccatgagagacaagactccatcaatgcat
acaatgaaccaaatagcacaaagtttgtatttatgctaagcacacgtgct
ggtggtctgggcatcaatcttgcaactgctgatgtagtaattttatatga
ttcagattggaatcctcaagttgatcttcagctatggactatgcccatag
aattggacaaaggaagactgtccgagtgtttcgctttataaccgataaca
ctgtggaagaaagaatagtggaacgtgctgagatgaaacttagactggat
tcgatagtaattcaacaagggaggctttgttagatcagacctgacaaaaa
ttgggaaagatgaatgcttcaaatgattcgacgtgtgccacacatgtgtt
tgcttcaaagaagtgaatcacttgatgaagatatgatgtattagaaaaag
gtgctagagactgcgattgatgaaagcctgtcagatgtgaagttcctgac
ttacgatggatcgagtccaggttataactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147049452_147050615
seq2: B6Ng01-230L19.b_48_1210

seq1  GAATTCTCTGATGAATTCTCAGACTGGTTTTATCAGTAAAGCATTTGCCA  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTCTCTGATGAATTCTCAGACTGGTTCTATCAGTAAAGCATTTGCCA  50

seq1  CATTCACTGCATTTGTAAGGTTTCTCTCCTTTATGAATTCTCTGATGCAT  100
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGCAT  100

seq1  AGTAAGATTGAATTTGTTTTTAAAACATTTGTCACATTCACTACATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATTGAATTTGTTTTTAAAACATTTGTCACATTCACTACATTTGT  150

seq1  AAATTTTCTCTTCTGTATGAATTCCCTGATGAATACTAAGATGGATCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTCTTCTGTATGAATTCCCTGATGAATACTAAGATGGATCTGA  200

seq1  TGGGTAAAGCATTTGTCACTTTTACTACTTTCGTAAGGTTTCTTTCCATG  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGGTAAAGCATTTGTCACTTTTACTACTTTTGTAAGGTTTCTTTCCATG  250

seq1  ATAAATTCTCTGCTGACTTTGTAGTTTTTCTCTCTGGGTAAGATATTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCTCTGCTGACTTTGTAGTTTTTCTCTCTGGGTAAGATATTTGT  300

seq1  GAAATTCACTACATTTGTAAGGGTTCCCTGCAATATTGTCTTTTTTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCACTACATTTGTAAGGGTTCCCTGCAATATTGTCTTTTTTCACC  350

seq1  ATGACTTTATGTTTAGAAACAAAAATCTTGTCTAATTCTGCATTTCGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTATGTTTAGAAACAAAAATCTTGTCTAATTCTGCATTTCGGTT  400

seq1  GTGTTTTTTCTTCTGCATGTTAATTCCTTGATTGAGACTAATGGTAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTTCTTCTGCATGTTAATTCCTTGATTGAGACTAATGGTAGAAA  450

seq1  ACAAACTTAAACTGTTTACAGAGTCATTGTATTTGCAAACTTCTTTAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTAAACTGTTTACAGAGTCATTGTATTTGCAAACTTCTTTAGTG  500

seq1  TTCCTGGGCTTAAGTCTTTTTTGGGTCGAGAATTGAAGAGCATCAGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGCTTAAGTCTTTTTTGGGTCGAGAATTGAAGAGCATCAGAGCT  550

seq1  GTGATTAGTTTTGTAAGGTGTACACTGGAGGGATTCAAGAATGACATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAGTTTTGTAAGGTGTACACTGGAGGGATTCAAGAATGACATTGC  600

seq1  TAAGCTTGTCCCATTTAGAAGACTTCTCTTGAATATTCATGTGTTCATGG  650
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTGTCCCATTTAGAAGACTTCTCTTGAATATTCATGTGTTCATGG  650

seq1  ACAATGTACTGGCTGTCTTGATCCAATACCTTCCCATTCTTTCCACGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTACTGGCTGTCTTGATCCAATACCTTCCCATTCTTTCCACGTAT  700

seq1  GCAATGATTTTCTGAAAAAAAAGGGGGGGCAATTAGAGGTGACATGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGATTTTCTGAAAAAAAAGGGGGGGCAATTAGAGGTGACATGAATT  750

seq1  ACTTATATAAGGAGTAAGGGACTCAATAATCAGTGAGCTTATGGATTCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATAAGGAGTAAGGGACTCAATAATCAGTGAGCTTATGGATTCGT  800

seq1  ACTCTCAAGAAAGGTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  850
      ||||||||||||||              | ||||||||||||||||||||
seq2  ACTCTCAAGAAAGG--------------TTTCTCTCTCTCTCTCTCTCTC  836

seq1  TCTCTCTCTCTCTCTCTCTGTGAATCATTACA-TGTATCCTCAGAAGAAC  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTGTGAATCATTACATTGTATCCTCAGAAGAAC  886

seq1  C-TCAAATATGATC-TATATCAAATGACTGGAAATGATAATA-CCCTGCT  946
      | |||||||||||| | ||||||||||||||||||||||||| |||||||
seq2  CTTCAAATATGATCTTTTATCAAATGACTGGAAATGATAATACCCCTGCT  936

seq1  --AAATGTTATTTTCAAATTAGACATCATA-CCACC--TCAAA-TATAAT  990
        || ||||||||||||||||||||||||| |||||  ||||| ||||||
seq2  TAAATTGTTATTTTCAAATTAGACATCATACCCACCCTTCAAATTATAAT  986

seq1  AACCCAGAATTGCTCCAAAAGAAGTGACATGAT--ATGTAC--TCACTGA  1036
      |||||||||||||||||||||||||||||||||   |||||   ||||||
seq2  AACCCAGAATTGCTCCAAAAGAAGTGACATGATTGTTGTACCTCCACTGA  1036

seq1  TAAGTAGATATTAGCCCAGAAACTTAGAATACCCAAGATA-TATCATACA  1085
      | ||| ||||||||||||||| |||||||||||||  ||| |||||||| 
seq2  TTAGT-GATATTAGCCCAGAACCTTAGAATACCCAGAATATTATCATAC-  1084

seq1  ATTTGTGAAACACATGACAC-TCAAGAAGAATGAAGACCAAAGTATGGA-  1133
      |||||||||   |||||||| |||||||||  | ||||||||||||||| 
seq2  ATTTGTGAACACCATGACACTTCAAGAAGACCG-AGACCAAAGTATGGAC  1133

seq1  CACTTTGCCCCTTCTTAGAATTGGGAAAAAA  1164
      ||| ||| ||||||||   |||||| |||||
seq2  CACCTTG-CCCTTCTTTAGATTGGGTAAAAA  1163

seq1: chr4_147110602_147111767
seq2: B6Ng01-230L19.g_66_1195 (reverse)

seq1  AAGTTATAAACACTGGACTCTGTATCCATCGTAAAGTTTCTAAGTGAACG  50
      |||||||||   ||||||||   |||||||||||      | || |||| 
seq2  AAGTTATAA--CCTGGACTC--GATCCATCGTAA-----GTCAG-GAAC-  39

seq1  TTCACCCATCTTGGAGAGCTTTTCATTCATTTCTGCAGTCTTCTTTGCAC  100
      ||||  |||||  || ||  ||||||  ||    |||||||   | ||||
seq2  TTCA--CATCT--GACAGGCTTTCATCAAT---CGCAGTCT--CTAGCAC  80

seq1  CTCTTTCTAAAATACCATCAATATCCTCATC-AGTGATTTCACTTTCTTT  149
      || ||||||| |   |||| ||||| ||||| ||||| |||||||   ||
seq2  CTTTTTCTAATA---CATC-ATATCTTCATCAAGTGA-TTCACTT--CTT  123

seq1  TGAAGCAAACACATGTGTGGCACCACGTCGAATCATTTGAAGCATTTCAT  199
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  TGAAGCAAACACATGTGTGGCA-CACGTCGAATCATTTGAAGCA-TTCAT  171

seq1  CTTTCCCAATTTTGTTCAGGTTCTGATCTA--CAAGCCTCCCTTGTTGAA  247
      |||||||||||||  ||||| |||||||||   |||||||||||||||||
seq2  CTTTCCCAATTTTTGTCAGG-TCTGATCTAACAAAGCCTCCCTTGTTGAA  220

seq1  TTACTATCGAATCCAGTCTAAGTTTCATCTCAGCACGTTCCACTATTCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATCGAATCCAGTCTAAGTTTCATCTCAGCACGTTCCACTATTCTT  270

seq1  TCTTCCACAGTGTTATCAGTTATAAAGCGAAACACTCGGACAGTCTTCCT  347
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTTCCACAGTGTTATCGGTTATAAAGCGAAACACTCGGACAGTCTTCCT  320

seq1  TTGTCCAATTCTATGGGCATGGTCCATAGGCTGAAGATCAATTTGAGGAT  397
      |||||||||||||||||||| ||||||| |||||||||||| ||||||||
seq2  TTGTCCAATTCTATGGGCATAGTCCATA-GCTGAAGATCAACTTGAGGAT  369

seq1  TCCAATCTGAATCATATAAAATTACTACATCAGCAGTTGCAAGATTGATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCTGAATCATATAAAATTACTACATCAGCAGTTGCAAGATTGATG  419

seq1  CCCAGACCACCAGCACGTGTGTTTAGCATAAATACAAACTTTGTGCTATT  497
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCAGACCACCAGCACGTGTGCTTAGCATAAATACAAACTTTGTGCTATT  469

seq1  TGGTTCATTGTATGCATTGATGGAGTCTTGTCTCTCATCATGGGGTGTCT  547
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  TGGTTCATTGTATGCATTGATGGAGTCTTGTCTC---TCATGGGGTGTCT  516

seq1  GTTCATCCAACCTGCAGTACTCATAATTTCTCCACATGCAATAATCTTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCCAACCTGCAGTACTCATAATTTCTCCACATGCAATAATCTTCC  566

seq1  AAAATGTCTAATACTCTTGTCATCTGACTAAAGATTAGTACTCTTGAACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTAATACTCTTGTCATCTGACTAAAGATTAGTACTCTTGAACC  616

seq1  TTGTTCTTTCAGTTTAGGGAGTAGCTTGTCTAACACCACCATCTTGCCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTCAGTTTAGGGAGTAGCTTGTCTAACACCACCATCTTGCCAC  666

seq1  TGTTGGTAACAAGATGCGTATCTGTTGTGTACAGTGGACCAGGTTCAGCT  747
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTAACTAGATGCGTATCTGTTGTGTACAGTGGACCAGGTTCAGCT  716

seq1  CCATCGAAGAGATACGGATGATTGCAGCATTTCCTCAACTGCATCAAAAT  797
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCATCGAAGAGTTACGGATGATTGCAGCATTTCCTCAACTGCATCAAAAT  766

seq1  GTTCAATAGCCTCATTTTGTCCATCTTCCCTGCTGAGTTTAATATGTCTA  847
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTCAATAGCCTCATTTTGTCCATCTTCCCTGCTGAGTTTAACATGTCTA  816

seq1  TATCTTTTATTAATATCCGAGTATACCATTCTCTTTGCATTTTGCTAAGA  897
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATC-TTTATTAATATCCGAGTATACCATTGTCTTTGCATTTTGCTAAGA  865

seq1  CCCACATAGATTTTTACTTCTTTTTTTGGAGGCAAACTCTTTTCAACATC  947
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATAGATTTTTACTTCTTTTTTTGGAGGCAAACTCTTTTCAACATC  915

seq1  AGCTTTAATTCGACGAAAGAGGAATGGACACAAAACCATATGAAGCCTCT  997
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCTTTAATTCGACGAAGGAGGAATGGACACAAAACCATATGAAGCCTCT  965

seq1  CAACTAGCTTTTGATCCCCAAGGCAATTATTTGTATCAACCCAGGAATCA  1047
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAACTAGCTTTTGATCCCCAAGGCAATTATTTGTATCAAACCAGGAATCA  1015

seq1  AAGTCATCAGCTGAATTAAACACATTTGGAAACAAAAAGTTTAGAAGTGA  1097
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  AAGTCATCAGCTGAATTAAACACATCTGGTAACAAAAAGTTTAGAAGTGA  1065

seq1  CCAGAGCTCATGCAGGTTGTTCTGAAGAGGCGTCCCTGTTAGCAACAGCC  1147
      ||||||||||||||||    |||| |||||||| ||||||||||||||||
seq2  CCAGAGCTCATGCAGG----TCTGGAGAGGCGTGCCTGTTAGCAACAGCC  1111

seq1  GATTTGTAGTCTTGAATTC  1166
      |||||||||| ||||||||
seq2  GATTTGTAGTTTTGAATTC  1130