BAC Information

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BAC

Clone NameB6Ng01-231C18
Chromosome4 (Build37)
Map Location 115,963,877 - 116,100,871
singlet/doubletdoublet
Overlap genePik3r3, Mast2
Upstream geneCyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748
Downstream geneLOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231C18.bB6Ng01-231C18.g
ACCGA043843GA043844
length1,2041,118
definitionB6Ng01-231C18.b B6Ng01-231C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,963,877 - 115,965,076)(116,100,272 - 116,100,871)
sequence
gaattcaggacctctggaagagcagtcagtacttttaaccactaagctgt
ctcttgagcccccatgaatcctccactctcatattcctacttcagactat
gggtctctgctacgtttgaacgcaagtagtgtgtgcttccagaagagaag
agaagagaagagaagagaagagaagagaagagaagagatacctgcttaat
ttcaagtgttgtgtttcttccctttggcagggacattggctgtggtactt
gttgagggtaaagcaatggagagactaatttagggaaactctggccactc
ttctagagactggaaaaataagcggttcctggtctttcaaagggttcaac
ttacttaccttgttcaagcagttgaattctgactgtgtcttctctcttgg
cagatggctcaatcacagaggagtgaggcagaggcgcctgaatgcctggc
tggggatcaagaatgaggactcagatgagtaagtccctcagcaggagact
gctccgtcatgcatgtgggaagtgggctctcaggctcactagcagatttg
aggccattgcgcctgtttgggacgagttacctgaagaatacagagtacac
agttgagcatagaaatggcccacatggaacctggatgcatacagtgccac
tcaaatgtcttagcgtactgaatgagttctgtaggttttgtgccatagta
aataggaaagtcgtttaaaactcaacactcacttaattttataaagattg
agaacaacattttattagcttttagatgtaagaaaactgattgctagaat
aatatttcaaatatttaatttttagaagctattttatcaatgaggaagat
gagaacctgccgcattatgatgagaaaacctggtttgtggaggatatcaa
cccgagtacaagcagaggacttgcttttatgggaaaccagatggtgcatt
cttaattcgtgagagtagcaagaaaggatgtacgcttgttctgtggtgta
agtcttctctggggattatgactttttcaatctgcattattaatgaaagt
cattatcataaagtgagatgggatatggtgaataaggtatggattgcatc
aaggtgttcatctatgggatttagaatgacctgcaattgagtatgggcct
tggctgcttacttggctgtgttaactagagaccataacttgacctggtcc
ttgt
gaattccatttatatggtagctatttgaagaattatttgaaggattttgt
tttctttatatgtttgtcacttttagttatcattttgactttattcatcc
agataagagtaaagtagtattttgttattttgctcatctccataataact
aacaatgttgatcatctttttatgtgcctattggacattttatatcttct
ttgaagaagtgtctgaattctttgctcattttaaaaactgagcactctta
ctttatttattttacattgaccttattcttgttatagttggctctctgag
ttcattaagttctgaatcctaccaatttaatttaggaaaaaaatatttta
gaaattccactataacatgatgagtttcttggcccaccagatcccatata
aggtcacagaaaccttttcttaattatgaaagcttggctttatcataggc
ttgtccccaactagctcttactacttaaattgacctatttatactcatct
atgtccatgtagcccattagttctgtcaatatcttagtccttgcctgtct
agctggtgagttcttcagcctctgactgtttcccagagtgcctctctctt
ctggaagttctgcctattctctcctcctttgctatgggccatcagctttg
actaaaccaatcagaaggtgagaaaagtgtattttataaaatatgctgca
gatgctgagcaattagataacaaaaccaaagtgtggctgtaatcagatct
cttctggaaagatctcactttgtacaaaaataagcatttgagtaatacaa
gggccatctttacacaacaccaaaagatcaccccctgcattccaggaagt
tttaagatgttaaacttgaatttcctccataccaagcactaccctaaagt
cacttgagtgaagtgattaattagttctgggcacaccctcttacctattt
gtatttttggctttgattttgtctctgcatacagtgtagatattttgggt
ttgcttgtttcattctacaaataatataatatatatgggctatatagcat
gatattatagtagaatataagattggagaggtgaatggagagatggtgtt
gggtattataatatgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_115963877_115965076
seq2: B6Ng01-231C18.b_44_1247

seq1  GAATTCAGGACCTCTGGAAGAGCAGTCAGTACTTTTAACCACTAAGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTCTGGAAGAGCAGTCAGTACTTTTAACCACTAAGCTGT  50

seq1  CTCTTGAGCCCCCATGAATCCTCCACTCTCATATTCCTACTTCAGACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGCCCCCATGAATCCTCCACTCTCATATTCCTACTTCAGACTAT  100

seq1  GGGTCTCTGCTACGTTTGAACGCAAGTAGTGTGTGCTTCCAGAAGAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTGCTACGTTTGAACGCAAGTAGTGTGTGCTTCCAGAAGAGAAG  150

seq1  AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGATACCTGCTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGATACCTGCTTAAT  200

seq1  TTCAAGTGTTGTGTTTCTTCCCTTTGGCAGGGACATTGGCTGTGGTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGTTGTGTTTCTTCCCTTTGGCAGGGACATTGGCTGTGGTACTT  250

seq1  GTTGAGGGTAAAGCAATGGAGAGACTAATTTAGGGAAACTCTGGCCACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGGTAAAGCAATGGAGAGACTAATTTAGGGAAACTCTGGCCACTC  300

seq1  TTCTAGAGACTGGAAAAATAAGCGGTTCCTGGTCTTTCAAAGGGTTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGACTGGAAAAATAAGCGGTTCCTGGTCTTTCAAAGGGTTCAAC  350

seq1  TTACTTACCTTGTTCAAGCAGTTGAATTCTGACTGTGTCTTCTCTCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTACCTTGTTCAAGCAGTTGAATTCTGACTGTGTCTTCTCTCTTGG  400

seq1  CAGATGGCTCAATCACAGAGGAGTGAGGCAGAGGCGCCTGAATGCCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCTCAATCACAGAGGAGTGAGGCAGAGGCGCCTGAATGCCTGGC  450

seq1  TGGGGATCAAGAATGAGGACTCAGATGAGTAAGTCCCTCAGCAGGAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATCAAGAATGAGGACTCAGATGAGTAAGTCCCTCAGCAGGAGACT  500

seq1  GCTCCGTCATGCATGTGGGAAGTGGGCTCTCAGGCTCACTAGCAGATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGTCATGCATGTGGGAAGTGGGCTCTCAGGCTCACTAGCAGATTTG  550

seq1  AGGCCATTGCGCCTGTTTGGGACGAGTTACCTGAAGAATACAGAGTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTGCGCCTGTTTGGGACGAGTTACCTGAAGAATACAGAGTACAC  600

seq1  AGTTGAGCATAGAAATGGCCCACATGGAACCTGGATGCATACAGTGCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGCATAGAAATGGCCCACATGGAACCTGGATGCATACAGTGCCAC  650

seq1  TCAAATGTCTTAGCGTACTGAATGAGTTCTGTAGGTTTTGTGCCATAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTCTTAGCGTACTGAATGAGTTCTGTAGGTTTTGTGCCATAGTA  700

seq1  AATAGGAAAGTCGTTTAAAACTCAACACTCACTTAATTTTATAAAGATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAAGTCGTTTAAAACTCAACACTCACTTAATTTTATAAAGATTG  750

seq1  AGAACAACATTTTATTAGCTTTTAGATGTAAGAAAACTGATTGCTAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACATTTTATTAGCTTTTAGATGTAAGAAAACTGATTGCTAGAAT  800

seq1  AATATTTCAAATATTTAATTTTTAGAAGCTATTTTATCAATGAGGAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCAAATATTTAATTTTTAGAAGCTATTTTATCAATGAGGAAGAT  850

seq1  GAGAACCTGCCGCATTATGATGAGAAAACCTGGTTTGTGGAGGATATCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCTGCCGCATTATGATGAGAAAACCTGGTTTGTGGAGGATATCAA  900

seq1  -CCGAGTACAAGCAGAGGACTTGC-TTTATGGGAAACCAGATGGTGCATT  948
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCGAGTACAAGCAGAGGACTTGCTTTTATGGGAAACCAGATGGTGCATT  950

seq1  CTTAATTCGTGAGAGTAGCAAGAAAGGATGTTACGCTTGTTCTGTGGTGT  998
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTAATTCGTGAGAGTAGCAAGAAAGGATG-TACGCTTGTTCTGTGGTGT  999

seq1  AAGTCTTCTCTGGGGA-TATGACCTTTTCAAATCTGCATTAATTAATGAA  1047
      |||||||||||||||| |||||| ||||| |||||||||| |||||||||
seq2  AAGTCTTCTCTGGGGATTATGACTTTTTC-AATCTGCATT-ATTAATGAA  1047

seq1  AGTCATTATCATAAAGTTGAGATGGGATTATGGTG-ATAAAGTATGGTCT  1096
      |||||||||||||||| |||||||||| ||||||| |||| ||||||  |
seq2  AGTCATTATCATAAAG-TGAGATGGGA-TATGGTGAATAAGGTATGGATT  1095

seq1  GCCATCAA-GTGTTCATCTAATGGTTTTAGGATGGACTGCATTTGAGTAT  1145
      | |||||| |||||||||||  || ||||| |||  ||||| ||||||||
seq2  G-CATCAAGGTGTTCATCTATGGGATTTAGAATGACCTGCAATTGAGTAT  1144

seq1  -GGCCTT-GCTGCTTACTT-GCTGTGTAACATAGATA-CACAACTT-AGC  1190
       |||||| ||||||||||| ||||||| |  |||| | || ||||| | |
seq2  GGGCCTTGGCTGCTTACTTGGCTGTGTTAACTAGAGACCATAACTTGACC  1194

seq1  TGGTCCTTGT  1200
      ||||||||||
seq2  TGGTCCTTGT  1204

seq1: chr4_116100272_116100871
seq2: B6Ng01-231C18.g_584_1184 (reverse)

seq1  TATCATA-TAT-ATACCCAAACACATCTCTCCATTCA-CTCT-CAATCTT  46
      ||||||| ||| ||||||||   |||||||||||||| |||| |||||||
seq2  TATCATATTATAATACCCAACACCATCTCTCCATTCACCTCTCCAATCTT  50

seq1  ATA-TCTACTATAATATCAATGCTATATAG-CCATATATTATTATATTAT  94
      ||| |||||||||||||| ||||||||||| ||||||| |||||||||||
seq2  ATATTCTACTATAATATC-ATGCTATATAGCCCATATA-TATTATATTAT  98

seq1  TTGTAGAATGAAAACAAAGCAAAACCAAAATATCTACACTGTTATGCAGA  144
      |||||||||||||   ||||||| ||||||||||||||||| ||||||||
seq2  TTGTAGAATGAAA--CAAGCAAACCCAAAATATCTACACTG-TATGCAGA  145

seq1  GACAAAATCAAAGCCAAAAATACAAATAGGTAAGAGGGTGTGCCCAGAAC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATCAAAGCCAAAAATACAAATAGGTAAGAGGGTGTGCCCAGAAC  195

seq1  TAATTAATCACTTCACTCAAGTGACTTTAGGGTAGTGCTTGGTATGGAGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATCACTTCACTCAAGTGACTTTAGGGTAGTGCTTGGTATGGAGG  245

seq1  AAATTCAAGTTTAACATCTTAAAACTTCCTGGAATGCAGGGGGTGATCTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAGTTTAACATCTTAAAACTTCCTGGAATGCAGGGGGTGATCTT  295

seq1  TTGGTGTTGTGTAAAGATGGCCCTTGTATTACTCAAATGCTTATTTTTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTGTGTAAAGATGGCCCTTGTATTACTCAAATGCTTATTTTTGT  345

seq1  ACAAAGTGAGATCTTTCCAGAAGAGATCTGATTACAGCCACACTTTGGTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGAGATCTTTCCAGAAGAGATCTGATTACAGCCACACTTTGGTT  395

seq1  TTGTTATCTAATTGCTCAGCATCTGCAGCATATTTTATAAAATACACTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCTAATTGCTCAGCATCTGCAGCATATTTTATAAAATACACTTT  445

seq1  TCTCACCTTCTGATTGGTTTAGTCAAAGCTGATGGCCCATAGCAAAGGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTTCTGATTGGTTTAGTCAAAGCTGATGGCCCATAGCAAAGGAG  495

seq1  GAGAGAATAGGCAGAACTTCCAGAAGAGAGAGGCACTCTGGGAAACAGTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATAGGCAGAACTTCCAGAAGAGAGAGGCACTCTGGGAAACAGTC  545

seq1  AGAGGCTGAAGAACTCACCAGCTAGACAGGCAAGGACTAAGATATTGACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGAAGAACTCACCAGCTAGACAGGCAAGGACTAAGATATTGACA  595

seq1  GAACTA  600
      ||||||
seq2  GAACTA  601