BAC Information

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BAC

Clone NameB6Ng01-231E02
Chromosome4 (Build37)
Map Location 150,959,690 - 150,960,785
singlet/doubletsinglet
Overlap geneCamta1
Upstream geneRere, Slc45a1, LOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3
Downstream geneLOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231E02.bB6Ng01-231E02.g
ACCGA043905GA043906
length1,2161,100
definitionB6Ng01-231E02.b B6Ng01-231E02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggtcctgggtaccgctaatgtctgatcagaggaaagttggaa
ggacacagtgcttgagtaaagggcagctcttccagcagaataaatgtagc
atgagagaaataaccagttgtccctctccctgtccctcggggggatggac
aaaaacctcacaaatgccagaggtcattggtgaggatctgggggcatttg
tctctctagcatcaacttggcaacattcccccagcgttctgtaccacagc
gacttcacagggcatggcccctggttgggatccaggtcttagactcaact
tgttttctcttgctgtagctgaggaaatgcctttgtgggtcgttcaatac
ttccaggtcccacagatgcccctgtgagcctttataccaccagtctcgtt
ccccttgctctgtgtccttacctgtccgctcatctgtcctcctgagtcca
agtctcgctccatctgtgttgagggtccctgcatgccatgatgctccaga
ggcatagctatttactgttgacagccatgaatgtctaggtttcctgttgc
tatgacaaaataccttgaccaaaacaccctaagggagttcttcggtgaaa
gtcacttattgagaagtcaagacagcaggagctagaagcacctggtgaca
tcacatccacactagcagaagccatgggttaatgcataaatacattaatg
catagatactcagctcacctgctcactctctttcttagtattctattgtt
gtgaagacaccatggccacgacagtgactcttatataaaaaaccaaaacc
aaaacaaaacacttaattagggctagcttcattcagaggcttagttcatt
atcattatcacaggaagcatggcagcacacaagcagacacggtgctggag
agaagccgagagctctatatccaaatgcacacaacaggaagagagcaacg
gctgggcctgacttgagcatttaaccctccctccaccccacaccaccagt
gacgtacttcctccaacaagaccacatttcctaaatcctgtcagtagtac
tgctcaaattcagactatggactttgggggcgttccttttcaaccacaca
tctaatagtcaagatgtcctaggaagttgccaccactggggacaggcttc
cagtgcgactgaattagtcaaaaatctccaagaaattgttcacagggcaa
actggtgaactatatc
gaattccaccacttagactcagccctgcagtcagagagctgcaggccacc
ttccagataacgtgagcacctggccctgtcactgctaatagaaacgtcct
agcaattggaagagagtggctgcaaatctccgacggtttagcacgaaaca
tatcaaataataaaaacgtaaaagagttgcgcaggaaataagaagctgtc
tttaaaatgagccccagatccctggctcaccatctctcgcctataatcac
atcattttcgtgcacaggacacgggtcggctacattttcaacaattccgt
ccagtcccaggtggcaagagaagttaagtgtttgtggcagttagtgggtt
caaggacatttaccgcgtaatgtttagccattgcttctgatctgggagct
ctccctcccaacagtcagggataacccgactttattgatgtataaaacac
accaaggtccaggcagcagttaagttagttttccttttcaaaaagtgtct
gctactgatggcaggtgggcactttcccaaaaataaattgccctctgccc
tgcacctgtctgataagtttctgaatgcctggctgaaggatggagcccag
agccatcctgtgaaaagccccgacagctgttgcccggcgtctcagcctcc
tcattgcgttcactacccgcgtcttggaccaattaatgagtgctcccctt
cacaggccattgagcacaacatggccctgtcaactcgttaccctgcattg
agtggctggatccggtaatccacaaaaatcaatcatctattctcaccata
tagagttgaaaaactgtgatggctgggacattaccttgtcttaggggatg
tggttagccattcttcgtgtttctcaaatgttattaaataagccgcaatt
tcctgaaacagaaaaaaataaaaaagataatgatacaattaggctcatgt
tgggaccctgagagcagaaagaaaaaaagttgttatttttcccccagctg
ctgtgcatcttggccaggctggaacgcggacttttctagaaaaacgttga
ccgaactcagcttctctttgaattcctctgattcccctttccacctcaac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_150959690_150960785
seq2: B6Ng01-231E02.g_68_1167

seq1  GAATTCCACCACTTAGACTCAGCCCTGCAGTCAGAGAGCTGCAGGCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCACTTAGACTCAGCCCTGCAGTCAGAGAGCTGCAGGCCACC  50

seq1  TTCCAGATAACGTGAGCACCTGGCCCTGTCACTGCTAATAGAAACGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATAACGTGAGCACCTGGCCCTGTCACTGCTAATAGAAACGTCCT  100

seq1  AGCAATTGGAAGAGAGTGGCTGCAAATCTCCGACGGTTTAGCACGAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTGGAAGAGAGTGGCTGCAAATCTCCGACGGTTTAGCACGAAACA  150

seq1  TATCAAATAATAAAAACGTAAAAGAGTTGCGCAGGAAATAAGAAGCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATAATAAAAACGTAAAAGAGTTGCGCAGGAAATAAGAAGCTGTC  200

seq1  TTTAAAATGAGCCCCAGATCCCTGGCTCACCATCTCTCGCCTATAATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGAGCCCCAGATCCCTGGCTCACCATCTCTCGCCTATAATCAC  250

seq1  ATCATTTTCGTGCACAGGACACGGGTCGGCTACATTTTCAACAATTCCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTCGTGCACAGGACACGGGTCGGCTACATTTTCAACAATTCCGT  300

seq1  CCAGTCCCAGGTGGCAAGAGAAGTTAAGTGTTTGTGGCAGTTAGTGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCCAGGTGGCAAGAGAAGTTAAGTGTTTGTGGCAGTTAGTGGGTT  350

seq1  CAAGGACATTTACCGCGTAATGTTTAGCCATTGCTTCTGATCTGGGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACATTTACCGCGTAATGTTTAGCCATTGCTTCTGATCTGGGAGCT  400

seq1  CTCCCTCCCAACAGTCAGGGATAACCCGACTTTATTGATGTATAAAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCAACAGTCAGGGATAACCCGACTTTATTGATGTATAAAACAC  450

seq1  ACCAAGGTCCAGGCAGCAGTTAAGTTAGTTTTCCTTTTCAAAAAGTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGTCCAGGCAGCAGTTAAGTTAGTTTTCCTTTTCAAAAAGTGTCT  500

seq1  GCTACTGATGGCAGGTGGGCACTTTCCCAAAAATAAATTGCCCTCTGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGATGGCAGGTGGGCACTTTCCCAAAAATAAATTGCCCTCTGCCC  550

seq1  TGCACCTGTCTGATAAGTTTCTGAATGCCTGGCTGAAGGATGGAGCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTGTCTGATAAGTTTCTGAATGCCTGGCTGAAGGATGGAGCCCAG  600

seq1  AGCCATCCTGTGAAAAGCCCCGACAGCTGTTGCCCGGCGTCTCAGCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCCTGTGAAAAGCCCCGACAGCTGTTGCCCGGCGTCTCAGCCTCC  650

seq1  TCATTGCGTTCACTACCCGCGTCTTGGACCAATTAATGAGTGCTCCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCGTTCACTACCCGCGTCTTGGACCAATTAATGAGTGCTCCCCTT  700

seq1  CACAGGCCATTGAGCACAACATGGCCCTGTCAACTCGTTACCCTGCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCCATTGAGCACAACATGGCCCTGTCAACTCGTTACCCTGCATTG  750

seq1  AGTGGCTGGATCCGGTAATCCACAAAAATCAATCATCTATTCTCACCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGGATCCGGTAATCCACAAAAATCAATCATCTATTCTCACCATA  800

seq1  TAGAGTTGAAAAACTGTGATGGCTGGGACATTACCTTGTCTTAGGGGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTGAAAAACTGTGATGGCTGGGACATTACCTTGTCTTAGGGGATG  850

seq1  TGGTTAGCCATTCTTCGTGTTTCTCAAATGTTATTAAATAAGCCGCAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGCCATTCTTCGTGTTTCTCAAATGTTATTAAATAAGCCGCAATT  900

seq1  TCCTGAAACAGAAAAAAAT-AAAAAGATAATGATAACAATTA-GCTCATG  948
      ||||||||||||||||||| |||||||||||||| ||||||| |||||||
seq2  TCCTGAAACAGAAAAAAATAAAAAAGATAATGAT-ACAATTAGGCTCATG  949

seq1  TT-GGACCCTGAGAAGCAGAAAGAAAAAAAAGTTGTTATTTTTCCCCCAG  997
      || |||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  TTGGGACCCTGAG-AGCAGAAAG-AAAAAAAGTTGTTATTTTTCCCCCAG  997

seq1  CTGCTGTGCATCTTGGCCAGGCTGGAACGCGGACTTTTCTAGAAAAACGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGCATCTTGGCCAGGCTGGAACGCGGACTTTTCTAGAAAAACGT  1047

seq1  TGACCCGGACTCAGCTTCTCTTTGA--TTCTCTGAT--CCCCTTCCA-CT  1092
      ||| ||| |||||||||||||||||  | |||||||  ||| ||||| ||
seq2  TGA-CCGAACTCAGCTTCTCTTTGAATTCCTCTGATTCCCCTTTCCACCT  1096

seq1  CAAC  1096
      ||||
seq2  CAAC  1100