BAC Information

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BAC

Clone NameB6Ng01-231F18
Chromosome4 (Build37)
Map Location 145,588,604 - 145,589,756
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231F18.bB6Ng01-231F18.g
ACCGA043981GA043982
length7891,155
definitionB6Ng01-231F18.b B6Ng01-231F18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaatggagcaactgtggaaggctgagaaacttcaaaagatatg
ttcaaagtccttagtgatcagaaaaatataaatcaaagcaacactgagat
tccaccttccaccaatcagaatggctaagatcaaaaactcgggtgacagc
acatgctgaacaggatgtggagaaagaggaccaatcctccattgcttgtg
gaattgcaaactggtcaactattctggaaatcaatctggaaattcctcag
aaaattggaaatagatataccttaaaacccagctataccactcttgggca
tgtacacaaaagatgccccaccatgacacagaggcttgtgttccactatg
ttcagagtggccttatttgtgatagccaggagctggaaacaacccagatg
ccccacaatggaagaatcgatactgaaacatggttcattcacacaatgga
atattattcatctattaagaacaatgacatcaggagctttggaggaaaat
ggactgaactagaaaattccatcctgagtgaggtaactcagacccaaaaa
ggacatgcatagtatgtacacactaataaatggatataagcccaaaaaag
tatataatacaatgtaaatgactaaaaagggttaaaagctcaaggaacca
agtgagaatgtcttaatcccagttgggagagagaagaaagcagtcatggg
ggaagaaggagggagggacttgagtgggagcagggacagagaggggaagg
agaaacatgatcaggcattatgagggatgggggggagga
gaattcagagatttcatttgaaacatcttcatacacttataagctggtac
ttaaaaaaattttattttttgttttgttttgtgaacatcttactaagact
acatccagcaggactccatggagtcttgctccatggtgctttcctatgca
ttggcagaaccatacgtgtgacaatgtattatataaaacatcttaccttg
taatagatggggaattttcctggacctcacaaccagaattaaggcaactt
gacgaaatttaagatttaaagctgtgatcctactgtttactcaacttgag
ggtttagcacacttttcaaagaacaacgtaaaaactaacattattctcct
tggacttctcttgatatcaacttttaaaacctaacttgatgcatagatac
aatggtaatttatgtactttttcaagtcctgctcagaaactgcatgagtg
tcatttgatgaaagcatgaaatgcagaggcttaaagcatagttcaaaaat
gaatatacagttatgggtattggttgataaaagtcatgtttataaatgtt
tgttgtcttgtccacttgaccactcggagccagttacctaatcctttata
aaagattactgttcactgtcccattctttccccatgtgatggatcccttg
atgttctagaagtactccaaagctctctctcaaggccagtcagagagaca
caaacagacaacagattacacagacaccaacatggagacaaaaggcagac
agaaagggagagctatacaagcagccttcaggaagttacagatttaaact
aactgaacagacacacagaggatggaagcacagggaacatgaagtagaga
attcaactttgtactcacactcagctaaatgcctctgaggaaaaggcttt
tcattttctttccttaactcaacacagatgcattattaaccaccagtatg
tttaatctactcacatatgaggaatcaattagccttgtgactttcttttg
cataagttacatatggggaaaaactaaaaatcacccaatgccgaaactag
tagtcctgtcatctgaaagtgtccatggcctgaccctgttctttaagtcc
agaaccccaggattgggctgtgcttctggactcttcacctcatgctgagc
ctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145588604_145589756
seq2: B6Ng01-231F18.g_67_1221 (reverse)

seq1  TCTA-GCTCAGCATGGAGGTG-AGAGCTCAGAAGCACAAGCCCAAACCTG  48
      |||| ||||||||| |||||| ||||  ||||||||| ||||||| ||||
seq2  TCTAGGCTCAGCAT-GAGGTGAAGAGTCCAGAAGCAC-AGCCCAATCCTG  48

seq1  GGGGTCTGACTTTAAAGAACAGGGTTCTGTGCCCATGGACACCTTTCAGA  98
      ||| ||||   |||||||||||||   |  | ||||||||| ||||||||
seq2  GGGTTCTGGACTTAAAGAACAGGG---TCAGGCCATGGACA-CTTTCAGA  94

seq1  TGACAGGGCTACTAGTTTC-GCATTGGGGTGATTTTTAGTTTTT-CCCAT  146
      ||||||| ||||||||||| ||||| |||||||||||||||||| |||||
seq2  TGACAGGACTACTAGTTTCGGCATT-GGGTGATTTTTAGTTTTTCCCCAT  143

seq1  ATTGTACTTATGCAAAAGAAAGTCACAA-GCTAATTGATTCCTCATATGT  195
      ||   ||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGTAACTTATGCAAAAGAAAGTCACAAGGCTAATTGATTCCTCATATGT  193

seq1  GAGTAGATTAAACATACTGGTGGTTAATAATGCATCTGTGTTGAGTTAAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGATTAAACATACTGGTGGTTAATAATGCATCTGTGTTGAGTTAAG  243

seq1  GAAAG-AAATG-AAAGCCTTTTCCTCAGAGGCATTTAGCTGAGTGTGAGT  293
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAATGAAAAGCCTTTTCCTCAGAGGCATTTAGCTGAGTGTGAGT  293

seq1  ACAAAGTTGAATTCTCTACTTCATGTTCCCTGTGCTTCCATCCTCTGTGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTGAATTCTCTACTTCATGTTCCCTGTGCTTCCATCCTCTGTGT  343

seq1  GTCTGTTCAGTTAGTTTAAATCTGTAACTTCCTGAAGGCTGCTTGTATAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCAGTTAGTTTAAATCTGTAACTTCCTGAAGGCTGCTTGTATAG  393

seq1  CTCTCCCTTTCTGTCTGCCTTTTGTCTCCATGTTGGTGTCTGTGTAATCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTTTCTGTCTGCCTTTTGTCTCCATGTTGGTGTCTGTGTAATCT  443

seq1  GTTGTCTGTTTGTGTCTCTCTGACTGGCCTTGAGAGAGAGCTTTGGAGTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTGTTTGTGTCTCTCTGACTGGCCTTGAGAGAGAGCTTTGGAGTA  493

seq1  CTTCTAGAACATCAAGGGATCCATCACATGGGGAAAGAATGGGACAGTGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGAACATCAAGGGATCCATCACATGGGGAAAGAATGGGACAGTGA  543

seq1  ACAGTAATCTTTTATAAAGGATTAGGTAACTGGCTCCGAGTGGTCAAGTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATCTTTTATAAAGGATTAGGTAACTGGCTCCGAGTGGTCAAGTG  593

seq1  GACAAGACAACAAACATTTATAAACATGACTTTTATCAACCAATACCCAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGACAACAAACATTTATAAACATGACTTTTATCAACCAATACCCAT  643

seq1  AACTGTATATTCATTTTTGAACTATGCTTTAAGCCTCTGCATTTCATGCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATATTCATTTTTGAACTATGCTTTAAGCCTCTGCATTTCATGCT  693

seq1  TTCATCAAATGACACTCATGCAGTTTCTGAGCAGGACTTGAAAAAGTACA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAAATGACACTCATGCAGTTTCTGAGCAGGACTTGAAAAAGTACA  743

seq1  TAAATTACCATTTTATCTATGCATCAAGTTAGGTTTTAAAAGTTGATATC  793
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAAATTACCATTGTATCTATGCATCAAGTTAGGTTTTAAAAGTTGATATC  793

seq1  AAGAGAAGTCCAAGGAGAATAATGTTAGTTTTTACGTTGTTCTTTGAAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGTCCAAGGAGAATAATGTTAGTTTTTACGTTGTTCTTTGAAAA  843

seq1  --GTGCTAAACCCTCAAGTTGAGTAAACAGTAGGATCACAGCTTTAAATC  891
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTAAACCCTCAAGTTGAGTAAACAGTAGGATCACAGCTTTAAATC  893

seq1  TTAAATTTCGTCAAGTTGCCTTAATTCTGGTTGTGAGGTCCAGGAAAATT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTCGTCAAGTTGCCTTAATTCTGGTTGTGAGGTCCAGGAAAATT  943

seq1  CCCCATCTATTACAAGGTAAGATGTTTTATATAATACATTGTCACACGTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCTATTACAAGGTAAGATGTTTTATATAATACATTGTCACACGTA  993

seq1  TGGTTCTGCCAATGCATAGGAAAGCACCATGGAGCAAGACTCCATGGAGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGCCAATGCATAGGAAAGCACCATGGAGCAAGACTCCATGGAGT  1043

seq1  CCTGCTGGATGTAGTCTTAGTAAGATGTTCACAAAACAAAACAAAAAATA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGATGTAGTCTTAGTAAGATGTTCACAAAACAAAACAAAAAATA  1093

seq1  AAATTTTTTTAAGTACCAGCTTATAAGTGTATGAAGGTGTTTCAAATGAA  1141
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAATTTTTTTAAGTACCAGCTTATAAGTGTATGAAGATGTTTCAAATGAA  1143

seq1  ATCTCTGAATTC  1153
      ||||||||||||
seq2  ATCTCTGAATTC  1155