BAC Information

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BAC

Clone NameB6Ng01-231I05
Chromosome4 (Build37)
Map Location 79,810,890 - 79,973,509
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040036, LOC667922
Downstream geneTyrp1, D4Bwg0951e, Mpdz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231I05.bB6Ng01-231I05.g
ACCGA044094GA044095
length1,1751,127
definitionB6Ng01-231I05.b B6Ng01-231I05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,972,348 - 79,973,509)(79,810,890 - 79,812,021)
sequence
gaattcattctgtctaatatacaagtcacccaaatagtttagatgggtat
cttctttactaaatagaaaactagttaaaagtagaaatgatgatatttat
ttttgtattattaacagcagctggaaatgttgccgacttgctacgctctg
aattaataaaataaatatattaaactgaaattttaaatttaatctcttct
tgaaatatactaaaacaatcagaaattggtgattgttcatttccatgtag
tatattctgtataataaataaataatacagtatttataacatgccttatt
ggtctaaattttaaaatttagaaattgtacaggagagaattaaaccaata
tcctattagaaagcagaaattaagagactttttgcagtataaatatcaat
aaaattcttacgaaccaaataaagggcaatgtgataagagacagtgatgt
attttaaactgagatgattattgactggggaccttttgacaaaaattatc
ctatgatatttggaaaagctgacatagattctagctataagaagcttgtg
attaaagcataaataataatgaaaactcatatccaaaaatatttctcaaa
ataaatgcttgggtacagagagtacatgtaaccttccttatattacaaga
taaaaatggaattaaatatatacaagcatggatatacattttaaagttat
tatagttcataaaactatattgtgtgttgtagttgattttcaatgcttta
tctttgcttgttttcctcattagttttctgttaatgtgtggtattactta
ataagtaagtgatctcaacttatttttagtaagtttcttcatctcatttt
ttcatggtgctaaattgcatgttaagaaagaatctacaatttagtattta
tagaagacaatttctttgtgattagttttctgcaacctgctgcaactttt
ttagcagcacgtagaagtgacctttccctttccagtggatgtaattcctt
ggaaattctttttcttataattttttccatttctgcttgtctttggctga
aacagaataagtccgagttgtgggacaattgttgggattattcatcactg
ccagttaggaagtagttctttccattctatcacatagtttcacttggttt
gacgagaaatgatgattccttctgg

gaattcaattaaggccatcaggacaggcaatgtatgacaattcagttatt
acgggataccagatagagacttggttcatgtcaccatcaaaatttggtaa
aatcgcgttgtctaaagtttaggcaatataataatcaaggaggaagcctc
agaggaatgtgataataaaacaatggcaagtttgggtgtggtttaattac
cttagcttggataatgtattttactaggaggacacatatggtaagtaatg
atagtttgcaagcacaaacagggcgaagtgatatctgtaattttagagcc
ttacatattttagaaaatgaaaacgtacttcaaaaccaaataacagaaga
caacaattaagaagctattaagcaataaaggctaatttaaaatcaaccat
gtgttcaaaaagaaacaagcaaataaaatcagccatgtggtgagtataaa
attaaacctatagatatcaaatccatactaagacatagccaagtagattc
agggggcacataataataaatacagattctacaagaagactagataagtc
ttcctaatctatgaaatgtgattgaatctcaaaatgaagcagatagatgt
ttctcggaactgaataaccagaattaatagaaagttaaaggagagcctga
caagcctgaagcaatgggcaatcagagtcatgagagtgttctgaatggag
agggcttcaggggttaaattaactcccaggatgtgctgttctttctggga
cgaagctatcaatatactttcccgaggtgtgctagctttcatgtttgtta
ttggtggtcttgaatgatttactgtataactggatgagaaagaaaggcca
aagggacttggagtctggcattagctgatacataagaattaaaatggcag
taactcttaactattaaaaacaggagttatcaaaaattgagatttaaatg
gagccagtgtacgtttcaggacatcagaattgttaatttgaagcaaggac
gatagtgaaaatcaaggagctttattagtttattagtatcatgttattat
gccagcatagatataaggaggaacaattatagtaacattctacttcagga
acctgtccttacacaggcatgtcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_79972348_79973509
seq2: B6Ng01-231I05.b_44_1218 (reverse)

seq1  CCAGAAAGAATCATCATTCCTTCTGTCAAAACACAGTGAAAATTATGTGA  50
      |||||| ||||||||||| ||   |||||| || |||| ||| |||||||
seq2  CCAGAAGGAATCATCATTTCT--CGTCAAACCA-AGTG-AAACTATGTGA  46

seq1  TAAGAATGGGAAGAACTACTT-CTTACTGCCAGTGATGAATAAACCCAAC  99
      | ||||||| ||||||||||| || |||| ||||||||||||| ||||||
seq2  T-AGAATGGAAAGAACTACTTCCTAACTGGCAGTGATGAATAATCCCAAC  95

seq1  AA-TGTCCCCACACTC-GACT--ATCTGTTTCCAGCAAAGACAAGCAG-A  144
      || ||||||   |||| ||||   ||||||||   ||||||||||||| |
seq2  AATTGTCCCACAACTCGGACTTATTCTGTTTCAGCCAAAGACAAGCAGAA  145

seq1  ATG--AAAAATTATA--GAAAAGA--TTCCAAGAATTAACATCCACTGGA  188
      |||  ||||||||||   ||||||  ||||||| | | ||||||||||||
seq2  ATGGAAAAAATTATAAGAAAAAGAATTTCCAAGGAATTACATCCACTGGA  195

seq1  A--GGGAAGGTCACTTCTACGTGCTGCT-AAAAAGTTGCAGCA-GTTGCA  234
      |  || |||||||||||||||||||||| |||||||||||||| ||||||
seq2  AAGGGAAAGGTCACTTCTACGTGCTGCTAAAAAAGTTGCAGCAGGTTGCA  245

seq1  GAAAACTAATCACAAAG-AATTGTCTTCTATAAATACTAATTTGTAGATT  283
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  GAAAACTAATCACAAAGAAATTGTCTTCTATAAATACTAAATTGTAGATT  295

seq1  CTTTCTTAACATGCAATTTAGCACCATG-AAAAATGAGATGAAGAAACTT  332
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTTCTTAACATGCAATTTAGCACCATGAAAAAATGAGATGAAGAAACTT  345

seq1  ACTAAAAATAAGTTGAGATCACTTACTTATTAAGTAATACCACACATTAA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAATAAGTTGAGATCACTTACTTATTAAGTAATACCACACATTAA  395

seq1  CAGAAAACTAATGAGGAAAACAAGCAAAGATAAAGCATTGAAAATCAACT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACTAATGAGGAAAACAAGCAAAGATAAAGCATTGAAAATCAACT  445

seq1  ACAACACACAATATAGTTTTATGAACTATAATAACTTTAAAATGTATATC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACACAATATAGTTTTATGAACTATAATAACTTTAAAATGTATATC  495

seq1  CATGCTTGTATATATTTAATTCCATTTTTATCTTGTAATATAAGGAAGGT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGTATATATTTAATTCCATTTTTATCTTGTAATATAAGGAAGGT  545

seq1  TACATGTACTCTCTGTACCCAAGCATTTATTTTGAGAAATATTTTTGGAT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTACTCTCTGTACCCAAGCATTTATTTTGAGAAATATTTTTGGAT  595

seq1  ATGAGTTTTCATTATTATTTATGCTTTAATCACAAGCTTCTTATAGCTAG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTTCATTATTATTTATGCTTTAATCACAAGCTTCTTATAGCTAG  645

seq1  AATCTATGTCAGCTTTTCCAAATATCATAGGATAATTTTTGTCAAAAGGT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGTCAGCTTTTCCAAATATCATAGGATAATTTTTGTCAAAAGGT  695

seq1  CCCCAGTCAATAATCATCTCAGTTTAAAATACATCACTGTCTCTTATCAC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTCAATAATCATCTCAGTTTAAAATACATCACTGTCTCTTATCAC  745

seq1  ATTGCCCTTTATTTGGTTCGTAAGAATTTTATTGATATTTATACTGCAAA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCTTTATTTGGTTCGTAAGAATTTTATTGATATTTATACTGCAAA  795

seq1  AAGTCTCTTAATTTCTGCTTTCTAATAGGATATTGGTTTAATTCTCTCCT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTTAATTTCTGCTTTCTAATAGGATATTGGTTTAATTCTCTCCT  845

seq1  GTACAATTTCTAAATTTTAAAATTTAGACCAATAAGGCATGTTATAAATA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATTTCTAAATTTTAAAATTTAGACCAATAAGGCATGTTATAAATA  895

seq1  CTGTATTATTTATTTATTATACAGAATATACTACATGGAAATGAACAATC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTATTTATTTATTATACAGAATATACTACATGGAAATGAACAATC  945

seq1  ACCAATTTCTGATTGTTTTAGTATATTTCAAGAAGAGATTAAATTTAAAA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTTCTGATTGTTTTAGTATATTTCAAGAAGAGATTAAATTTAAAA  995

seq1  TTTCAGTTTAATATATTTATTTTATTAATTCAGAGCGTAGCAAGTCGGCA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTTAATATATTTATTTTATTAATTCAGAGCGTAGCAAGTCGGCA  1045

seq1  ACATTTCCAGCTGCTGTTAATAATACAAAAATAAATATCATCATTTCTAC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCAGCTGCTGTTAATAATACAAAAATAAATATCATCATTTCTAC  1095

seq1  TTTTAACTAGTTTTCTATTTAGTAAAGAAGATACCCATCTAAACTATTTG  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTAGTTTTCTATTTAGTAAAGAAGATACCCATCTAAACTATTTG  1145

seq1  GGTGACTTGTATATTAGACAGAATGAATTC  1162
      ||||||||||||||||||||||||||||||
seq2  GGTGACTTGTATATTAGACAGAATGAATTC  1175


seq1: chr4_79810890_79812021
seq2: B6Ng01-231I05.g_68_1194

seq1  GAATTCAATTAAGGCCATCAGGACAGGCAATGTATGACAATTCAGTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAGGCCATCAGGACAGGCAATGTATGACAATTCAGTTATT  50

seq1  ACGGGATACCAGATAGAGACTTGGTTCATGTCACCATCAAAATTTGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGATACCAGATAGAGACTTGGTTCATGTCACCATCAAAATTTGGTAA  100

seq1  AATCGCGTTGTCTAAAGTTTAGGCAATATAATAATCAAGGAGGAAGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCGTTGTCTAAAGTTTAGGCAATATAATAATCAAGGAGGAAGCCTC  150

seq1  AGAGGAATGTGATAATAAAACAATGGCAAGTTTGGGTGTGGTTTAATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATGTGATAATAAAACAATGGCAAGTTTGGGTGTGGTTTAATTAC  200

seq1  CTTAGCTTGGATAATGTATTTTACTAGGAGGACACATATGGTAAGTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTTGGATAATGTATTTTACTAGGAGGACACATATGGTAAGTAATG  250

seq1  ATAGTTTGCAAGCACAAACAGGGCGAAGTGATATCTGTAATTTTAGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGCAAGCACAAACAGGGCGAAGTGATATCTGTAATTTTAGAGCC  300

seq1  TTACATATTTTAGAAAATGAAAACGTACTTCAAAACCAAATAACAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATTTTAGAAAATGAAAACGTACTTCAAAACCAAATAACAGAAGA  350

seq1  CAACAATTAAGAAGCTATTAAGCAATAAAGGCTAATTTAAAATCAACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTAAGAAGCTATTAAGCAATAAAGGCTAATTTAAAATCAACCAT  400

seq1  GTGTTCAAAAAGAAACAAGCAAATAAAATCAGCCATGTGGTGAGTATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAAAAAGAAACAAGCAAATAAAATCAGCCATGTGGTGAGTATAAA  450

seq1  ATTAAACCTATAGATATCAAATCCATACTAAGACATAGCCAAGTAGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACCTATAGATATCAAATCCATACTAAGACATAGCCAAGTAGATTC  500

seq1  AGGGGGCACATAATAATAAATACAGATTCTACAAGAAGACTAGATAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCACATAATAATAAATACAGATTCTACAAGAAGACTAGATAAGTC  550

seq1  TTCCTAATCTATGAAATGTGATTGAATCTCAAAATGAAGCAGATAGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATCTATGAAATGTGATTGAATCTCAAAATGAAGCAGATAGATGT  600

seq1  TTCTCGGAACTGAATAACCAGAATTAATAGAAAGTTAAAGGAGAGCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGGAACTGAATAACCAGAATTAATAGAAAGTTAAAGGAGAGCCTGA  650

seq1  CAAGCCTGAAGCAATGGGCAATCAGAGTCATGAGAGTGTTCTGAATGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGAAGCAATGGGCAATCAGAGTCATGAGAGTGTTCTGAATGGAG  700

seq1  AGGGCTTCAGGGGTTAAATTAACTCCCAGGATGTGCTGTTCTTTCTGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCAGGGGTTAAATTAACTCCCAGGATGTGCTGTTCTTTCTGGGA  750

seq1  CGAAGCTATCAATATACTTTCCCGAGGTGTGCTAGCTTTCATGTTTGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCTATCAATATACTTTCCCGAGGTGTGCTAGCTTTCATGTTTGTTA  800

seq1  TTGGTGGTCTTGAATGATTTACTGTATAACTGGATGAGAAAGAAAGGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGTCTTGAATGATTTACTGTATAACTGGATGAGAAAGAAAGGCCA  850

seq1  AAGGGACTTGGAGTCTGGCATTAGCTGATACATAAGAATTAAAATGGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACTTGGAGTCTGGCATTAGCTGATACATAAGAATTAAAATGGCAG  900

seq1  TAACTCTTAACTATTAAAAACAGGAGTTATCAAAAATTGAGATTTAAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTAACTATTAAAAACAGGAGTTATCAAAAATTGAGATTTAAATG  950

seq1  GAGCCAGTGTACGTTTCAGGACATCAGAAATGTT-ATTTGAAGCAAAGGA  999
      ||||||||||||||||||||||||||||| |||| ||||||||| |||||
seq2  GAGCCAGTGTACGTTTCAGGACATCAGAATTGTTAATTTGAAGC-AAGGA  999

seq1  CGATAGTGAAAATCAAGGGAGCTTTA-TAGTTTA-TAGTATCAATGTTAT  1047
      |||||||||||||||| ||||||||| ||||||| ||||||| |||||||
seq2  CGATAGTGAAAATCAA-GGAGCTTTATTAGTTTATTAGTATC-ATGTTAT  1047

seq1  TAATGCAAGCATAGATATAAGAAGAAACAATTATAGTAACATTCTACTTT  1097
      | |||| |||||||||||||| || |||||||||||||||||||||| ||
seq2  T-ATGCCAGCATAGATATAAGGAGGAACAATTATAGTAACATTCTAC-TT  1095

seq1  CAGGAGACTGTCCCCTTACACAGGCAATGTCATGT  1132
      |||||  ||||  |||||||||||| |||||||||
seq2  CAGGAACCTGT--CCTTACACAGGC-ATGTCATGT  1127


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