BAC Information

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BAC

Clone NameB6Ng01-232K24
Chromosome4 (Build37)
Map Location 129,705,138 - 129,843,921
singlet/doubletdoublet
Overlap geneCol16a1, Pef1, Hcrtr1, Tinagl
Upstream geneIbrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2
Downstream geneGm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232K24.bB6Ng01-232K24.g
ACCGA044959GA044960
length7481,001
definitionB6Ng01-232K24.b B6Ng01-232K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,705,138 - 129,705,885)(129,842,933 - 129,843,921)
sequence
gaattctctggagagggttacccccacctcctccctgccaagttcctata
taatgagaaataagcagccttaccatgctgaggcagggtcctgagaccag
taattggggctcatcacagagatcgatttaagctcattggttgggctgta
ggccagcgacagtccctggagatgagaggaagggagttctgggggtggac
atctgataacatctgagtccaaggtctctgggaggaggatgctgggctcc
acaaggaagctcctaggcatgaggagaaaaaggaagtccaacatcctgcg
gccccagctcctgctgcccctgagcaggcaagagcagggggaatccttca
ccccgcccccagctctcagtgtcccttagtgcctaatccaggctggtatg
tccccttctgctacggtggcactgcacagctccagacatcaatccaggag
tccctagagtcaaccaaaaaagtcaatatttaatttgggcaccatgttaa
tgccatcgatcggcagcccccttctacccccacttcctcgggcttgtttg
cctcttcctactcacagtatgctctggggtgggatgctcgaacccaatgg
aggcacagtttagcttggagttgctctgagaggctggcctgtataggagt
gctgttctgagacaccctgcttcttatccccaccgagaatcagctctgct
ctgagtttccccaagaggacaatgagtttggggggtgaagattgtggg
gaattcaagagctaatggggtggggttgggggagcgcatccgggacctca
gcactgagatgtgggcagaaggattcggagctaaaaggtcacctttgcct
tcaacttcacgagtagtttggactatgtgaaaccttgtctcaaaacacaa
acttgtcccaactctggccaaccactgagtgacaggctatgcagagaggg
gtgaacactcatcaggtccctggctacgctcagatttcagaagtcacagg
ggtagcttgggggtgctgcgatccagatgttgagacccggtgcaagcagt
gccccctctccctcttgctttgccgctaggtggggagaagagacgctgcc
agacggaaggaccattaagtactgggtgagtctctggtgcgaggctgagt
cccaagttcctgcccttctgagccctccatcatctgtcttttgcctcatg
tctctccccttttcactcccagactgctgccaactcgtggggcccatggt
ggggtgaaaggggccacttccggatcgtgcgtggcaccaacgagtgcgac
atcgagaccttcgtgctgggcgtctggggtcgcgtgggaatggaggacat
ggggcaccactgagtctcagccactaggcgaggtgggatccacagccaca
gaagaggccttgggggccatgcccgatgaagccttgtgtgcacttcggga
ccaggtgctaatctctacagactcagatccgcgcgtgcgcgctaaaggca
gaatcccacctaggagacaaagatgcaccaggctggcggaagcctcccag
atatcacagccgggaactgggaagggcccttgttgggaaactgccaggga
gtatagacaggattccaggtccctggttcagtcaggccaagaacacagga
gctaaagacaccccaaccttcatcacccttcctacccacccctctctctc
atcttctttttgatgaatttctgtccatctccctagcctccattttggtt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129705138_129705885
seq2: B6Ng01-232K24.b_46_793

seq1  GAATTCTCTGGAGAGGGTTACCCCCACCTCCTCCCTGCCAAGTTCCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAGAGGGTTACCCCCACCTCCTCCCTGCCAAGTTCCTATA  50

seq1  TAATGAGAAATAAGCAGCCTTACCATGCTGAGGCAGGGTCCTGAGACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGAAATAAGCAGCCTTACCATGCTGAGGCAGGGTCCTGAGACCAG  100

seq1  TAATTGGGGCTCATCACAGAGATCGATTTAAGCTCATTGGTTGGGCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGGGCTCATCACAGAGATCGATTTAAGCTCATTGGTTGGGCTGTA  150

seq1  GGCCAGCGACAGTCCCTGGAGATGAGAGGAAGGGAGTTCTGGGGGTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCGACAGTCCCTGGAGATGAGAGGAAGGGAGTTCTGGGGGTGGAC  200

seq1  ATCTGATAACATCTGAGTCCAAGGTCTCTGGGAGGAGGATGCTGGGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATAACATCTGAGTCCAAGGTCTCTGGGAGGAGGATGCTGGGCTCC  250

seq1  ACAAGGAAGCTCCTAGGCATGAGGAGAAAAAGGAAGTCCAACATCCTGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAGCTCCTAGGCATGAGGAGAAAAAGGAAGTCCAACATCCTGCG  300

seq1  GCCCCAGCTCCTGCTGCCCCTGAGCAGGCAAGAGCAGGGGGAATCCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCTCCTGCTGCCCCTGAGCAGGCAAGAGCAGGGGGAATCCTTCA  350

seq1  CCCCGCCCCCAGCTCTCAGTGTCCCTTAGTGCCTAATCCAGGCTGGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCCCCAGCTCTCAGTGTCCCTTAGTGCCTAATCCAGGCTGGTATG  400

seq1  TCCCCTTCTGCTACGGTGGCACTGCACAGCTCCAGACATCAATCCAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCTGCTACGGTGGCACTGCACAGCTCCAGACATCAATCCAGGAG  450

seq1  TCCCTAGAGTCAACCAAAAAAGTCAATATTTAATTTGGGCACCATGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGAGTCAACCAAAAAAGTCAATATTTAATTTGGGCACCATGTTAA  500

seq1  TGCCATCGATCGGCAGCCCCCTTCTACCCCCACTTCCTCGGGCTTGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCGATCGGCAGCCCCCTTCTACCCCCACTTCCTCGGGCTTGTTTG  550

seq1  CCTCTTCCTACTCACAGTATGCTCTGGGGTGGGATGCTCGAACCCAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCTACTCACAGTATGCTCTGGGGTGGGATGCTCGAACCCAATGG  600

seq1  AGGCACAGTTTAGCTTGGAGTTGCTCTGAGAGGCTGGCCTGTATAGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGTTTAGCTTGGAGTTGCTCTGAGAGGCTGGCCTGTATAGGAGT  650

seq1  GCTGTTCTGAGACACCCTGCTTCTTATCCCCACCGAGAATCAGCTCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTGAGACACCCTGCTTCTTATCCCCACCGAGAATCAGCTCTGCT  700

seq1  CTGAGTTTCCCCAAGAGGACAATGAGTTTGGGGGGTGAAGATTGTGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTCCCCAAGAGGACAATGAGTTTGGGGGGTGAAGATTGTGGG  748

seq1: chr4_129842933_129843921
seq2: B6Ng01-232K24.g_67_1067 (reverse)

seq1  CAACCAAAATGGAGGCTAGGGAGATGGACAG-AATTCATCAAAAAGAAGA  49
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAACCAAAATGGAGGCTAGGGAGATGGACAGAAATTCATCAAAAAGAAGA  50

seq1  TGAGAGAGA-GGGTGGGTAGG-AGGGTGATG-AGGTTGGGGTGTC-TTAG  95
      ||||||||| ||||||||||| ||||||||| ||||||||||||| ||||
seq2  TGAGAGAGAGGGGTGGGTAGGAAGGGTGATGAAGGTTGGGGTGTCTTTAG  100

seq1  CTCCTGTGGTCTTGGCCTGGCTG-ACCAGGGACCTGGAAT-CTGTCTATA  143
      |||||||| |||||||||| ||| |||||||||||||||| |||||||||
seq2  CTCCTGTGTTCTTGGCCTGACTGAACCAGGGACCTGGAATCCTGTCTATA  150

seq1  CTCCCT-GCAGTTTCCAAAC-AGGGCCCTTCCCAGTT-CCGGCTGTGATA  190
      |||||| ||||||||| ||| |||||||||||||||| ||||||||||||
seq2  CTCCCTGGCAGTTTCCCAACAAGGGCCCTTCCCAGTTCCCGGCTGTGATA  200

seq1  TCTGGG-GGCTTCCGCCAGCCTGGTGCATCTTTGTCTCCTAGGTGGGATT  239
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGGCTTCCGCCAGCCTGGTGCATCTTTGTCTCCTAGGTGGGATT  250

seq1  CTGCC-TTAGCGCGCACGCGCGGATCTGAGTCTGTAGAGATTAGCACCTG  288
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTAGCGCGCACGCGCGGATCTGAGTCTGTAGAGATTAGCACCTG  300

seq1  GTCCCGAAGTGCACACAAGGCTTCATCGGGCATGGCCCCCAAGGCCTCTT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGAAGTGCACACAAGGCTTCATCGGGCATGGCCCCCAAGGCCTCTT  350

seq1  CTGTGGCTGTGGATCCCACCTCGCCTAGTGGCTGAGACTCAGTGGTGCCC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTGTGGATCCCACCTCGCCTAGTGGCTGAGACTCAGTGGTGCCC  400

seq1  CATGTCCTCCATTCCCACGCGACCCCAGACGCCCAGCACGAAGGTCTCGA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTCCATTCCCACGCGACCCCAGACGCCCAGCACGAAGGTCTCGA  450

seq1  TGTCGCACTCGTTGGTGCCACGCACGATCCGGAAGTGGCCCCTTTCACCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCACTCGTTGGTGCCACGCACGATCCGGAAGTGGCCCCTTTCACCC  500

seq1  CACCATGGGCCCCACGAGTTGGCAGCAGTCTGGGAGTGAAAAGGGGAGAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGGCCCCACGAGTTGGCAGCAGTCTGGGAGTGAAAAGGGGAGAG  550

seq1  ACATGAGGCAAAAGACAGATGATGGAGGGCTCAGAAGGGCAGGAACTTGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGCAAAAGACAGATGATGGAGGGCTCAGAAGGGCAGGAACTTGG  600

seq1  GACTCAGCCTCGCACCAGAGACTCACCCAGTACTTAATGGTCCTTCCGTC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGCCTCGCACCAGAGACTCACCCAGTACTTAATGGTCCTTCCGTC  650

seq1  TGGCAGCGTCTCTTCTCCCCACCTAGCGGCAAAGCAAGAGGGAGAGGGGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCGTCTCTTCTCCCCACCTAGCGGCAAAGCAAGAGGGAGAGGGGG  700

seq1  CACTGCTTGCACCGGGTCTCAACATCTGGATCGCAGCACCCCCAAGCTAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTTGCACCGGGTCTCAACATCTGGATCGCAGCACCCCCAAGCTAC  750

seq1  CCCTGTGACTTCTGAAATCTGAGCGTAGCCAGGGACCTGATGAGTGTTCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGACTTCTGAAATCTGAGCGTAGCCAGGGACCTGATGAGTGTTCA  800

seq1  CCCCTCTCTGCATAGCCTGTCACTCAGTGGTTGGCCAGAGTTGGGACAAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCTGCATAGCCTGTCACTCAGTGGTTGGCCAGAGTTGGGACAAG  850

seq1  TTTGTGTTTTGAGACAAGGTTTCACATAGTCCAAACTACTCGTGAAGTTG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTTGAGACAAGGTTTCACATAGTCCAAACTACTCGTGAAGTTG  900

seq1  AAGGCAAAGGTGACCTTTTAGCTCCGAATCCTTCTGCCCACATCTCAGTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAGGTGACCTTTTAGCTCCGAATCCTTCTGCCCACATCTCAGTG  950

seq1  CTGAGGTCCCGGATGCGCTCCCCCAACCCCACCCCATTAGCTCTTGAATT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCCCGGATGCGCTCCCCCAACCCCACCCCATTAGCTCTTGAATT  1000

seq1  C  989
      |
seq2  C  1001