BAC Information

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BAC

Clone NameB6Ng01-232N07
Chromosome4 (Build37)
Map Location 129,255,211 - 129,381,830
singlet/doubletdoublet
Overlap geneBC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b
Upstream geneZscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck
Downstream geneKhdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232N07.bB6Ng01-232N07.g
ACCGA045066GA045067
length6611,086
definitionB6Ng01-232N07.b B6Ng01-232N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,381,171 - 129,381,830)(129,255,211 - 129,256,284)
sequence
gaattctgggaacttttcggagggtacgtgaattctagggcccagagagg
tgggttggtggtggttcaggagggatggttgttgccatttcctagtccaa
agaagaaagaaatgaaattcagatctctctctctccacctcccccctctc
cctcttctgtctagtaaaaggttgagaagaggtgggtgaggtaaagggtg
gaaaagagcccacaaagtcacaaatcccagctgtacctgaaagccaagta
aggcctctcagccccctcttctcagtcatccatgggtgggagagctgcat
agggtttgagacataacctcattgccaaagaaagctcacagagcctgtga
gcgtttacctcctgctcatctgtgtgtacctaggaacctgcctgctgaac
acagcaaggagggtggcgatggacaggtgggcagggaaggttggaaggta
caaagcctgaccagatgaaagctgagaaacccccatagcttccagttcct
taattttccactttgtgtctttgcagctgtcaacagagcctggatcccag
gagcgacctgctgtatagaggctggcctgggccatagaaacccaggagag
gagtcaacattttgtgtttcaccccacctcttgatctgattttctcacag
aaagccaggca
gaattcctggttccgttgtcctagggcacagcactgaggaactactgtgg
acattggtttgttctcatctccttccaacctcacagatttgggcctttag
agggactggctcaaagaccccatgcaagtccatctaacccaccagactca
ccagctcccgtctgagccactcaagcgcagaatccatggagtcaaagcca
cagatggccccgggtccgactggctcaggtctagcttgggctctgtacca
agcccggctctggactctggcagtccactcgaggtatgagggccgtcggg
tctgcagttgaagcttggcagtcagggccttcagagaatctaagctctct
tcctcatcctcctcacccttctctcccactgcctggaatttcagcggccc
tagggacatggtaggtctgtggtgaccaacgggacagtaagggaaaggct
ggctatttggccgtgtgagaagtgaaagaagatgaggttgaaaagaatgt
gccaagagtgtgtgctgaattgagaaggtgggtgagggacgctaagtgtg
ccaggctgagtgagcagatgggtatgtgaggctaagtgtgcaagagatgg
aattttcctggtttgctaactaggggccacgtgatgcccatccgggtggg
ggcaggaggagcccttcagatgaattttattgtctttgcccagattcagg
ttcctggttcccagaaaggaagttgcagcaggataagaaaagcatcgtcc
acagccggcttggccctcctcccaagacccaagtcagaggagtcaagggg
gaagagacagctgactggctggtgctctttcctctttacagagctagccc
tttctgcaaggcaataggtccagctgcctagccttgggagtcaggagccc
tgggcctggtgctacctttgaggggacttttaagtagcttcattccactt
cttgaagcctctgttgtgacaggtcggtgacaccaagtctttactcaacg
gcctttagggttctgtttgccaatcactgaaaaagctcttgactggatga
agtcaatctcatcctcctatgatggccggtcctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129381171_129381830
seq2: B6Ng01-232N07.b_50_710 (reverse)

seq1  TGCCTGGCTTTCTGTGAGAAAATCAGATCAAGAGGTGGGGTGAAACAC-A  49
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCCTGGCTTTCTGTGAGAAAATCAGATCAAGAGGTGGGGTGAAACACAA  50

seq1  ACTGTTGACTCCTCTCCTGGGTTTCTATGGCCCAGGCCAGCCTCTATACA  99
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGACTCCTCTCCTGGGTTTCTATGGCCCAGGCCAGCCTCTATACA  100

seq1  GCAGGTCGCTCCTGGGATCCAGGCTCTGTTGACAGCTGCAAAGACACAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCGCTCCTGGGATCCAGGCTCTGTTGACAGCTGCAAAGACACAAA  150

seq1  GTGGAAAATTAAGGAACTGGAAGCTATGGGGGTTTCTCAGCTTTCATCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAATTAAGGAACTGGAAGCTATGGGGGTTTCTCAGCTTTCATCTG  200

seq1  GTCAGGCTTTGTACCTTCCAACCTTCCCTGCCCACCTGTCCATCGCCACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCTTTGTACCTTCCAACCTTCCCTGCCCACCTGTCCATCGCCACC  250

seq1  CTCCTTGCTGTGTTCAGCAGGCAGGTTCCTAGGTACACACAGATGAGCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGCTGTGTTCAGCAGGCAGGTTCCTAGGTACACACAGATGAGCAG  300

seq1  GAGGTAAACGCTCACAGGCTCTGTGAGCTTTCTTTGGCAATGAGGTTATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAACGCTCACAGGCTCTGTGAGCTTTCTTTGGCAATGAGGTTATG  350

seq1  TCTCAAACCCTATGCAGCTCTCCCACCCATGGATGACTGAGAAGAGGGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACCCTATGCAGCTCTCCCACCCATGGATGACTGAGAAGAGGGGG  400

seq1  CTGAGAGGCCTTACTTGGCTTTCAGGTACAGCTGGGATTTGTGACTTTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGCCTTACTTGGCTTTCAGGTACAGCTGGGATTTGTGACTTTGT  450

seq1  GGGCTCTTTTCCACCCTTTACCTCACCCACCTCTTCTCAACCTTTTACTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTTTTCCACCCTTTACCTCACCCACCTCTTCTCAACCTTTTACTA  500

seq1  GACAGAAGAGGGAGAGGGGGGAGGTGGAGAGAGAGAGATCTGAATTTCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGAGGGAGAGGGGGGAGGTGGAGAGAGAGAGATCTGAATTTCAT  550

seq1  TTCTTTCTTCTTTGGACTAGGAAATGGCAACAACCATCCCTCCTGAACCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTCTTTGGACTAGGAAATGGCAACAACCATCCCTCCTGAACCA  600

seq1  CCACCAACCCACCTCTCTGGGCCCTAGAATTCACGTACCCTCCGAAAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAACCCACCTCTCTGGGCCCTAGAATTCACGTACCCTCCGAAAAGT  650

seq1  TCCCAGAATTC  660
      |||||||||||
seq2  TCCCAGAATTC  661

seq1: chr4_129255211_129256284
seq2: B6Ng01-232N07.g_69_1154

seq1  GAATTCCTGGTTCCGTTGTCCTAGGGCACAGCACTGAGGAACTACTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTTCCGTTGTCCTAGGGCACAGCACTGAGGAACTACTGTGG  50

seq1  ACATTGGTTTGTTCTCATCTCCTTCCAACCTCACAGATTTGGGCCTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGTTTGTTCTCATCTCCTTCCAACCTCACAGATTTGGGCCTTTAG  100

seq1  AGGGACTGGCTCAAAGACCCCATGCAAGTCCATCTAACCCACCAGACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGGCTCAAAGACCCCATGCAAGTCCATCTAACCCACCAGACTCA  150

seq1  CCAGCTCCCGTCTGAGCCACTCAAGCGCAGAATCCATGGAGTCAAAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCCGTCTGAGCCACTCAAGCGCAGAATCCATGGAGTCAAAGCCA  200

seq1  CAGATGGCCCCGGGTCCGACTGGCTCAGGTCTAGCTTGGGCTCTGTACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCCCCGGGTCCGACTGGCTCAGGTCTAGCTTGGGCTCTGTACCA  250

seq1  AGCCCGGCTCTGGACTCTGGCAGTCCACTCGAGGTATGAGGGCCGTCGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGGCTCTGGACTCTGGCAGTCCACTCGAGGTATGAGGGCCGTCGGG  300

seq1  TCTGCAGTTGAAGCTTGGCAGTCAGGGCCTTCAGAGAATCTAAGCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTTGAAGCTTGGCAGTCAGGGCCTTCAGAGAATCTAAGCTCTCT  350

seq1  TCCTCATCCTCCTCACCCTTCTCTCCCACTGCCTGGAATTTCAGCGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCCTCCTCACCCTTCTCTCCCACTGCCTGGAATTTCAGCGGCCC  400

seq1  TAGGGACATGGTAGGTCTGTGGTGACCAACGGGACAGTAAGGGAAAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACATGGTAGGTCTGTGGTGACCAACGGGACAGTAAGGGAAAGGCT  450

seq1  GGCTATTTGGCCGTGTGAGAAGTGAAAGAAGATGAGGTTGAAAAGAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTTGGCCGTGTGAGAAGTGAAAGAAGATGAGGTTGAAAAGAATGT  500

seq1  GCCAAGAGTGTGTGCTGAATTGAGAAGGTGGGTGAGGGACGCTAAGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAGTGTGTGCTGAATTGAGAAGGTGGGTGAGGGACGCTAAGTGTG  550

seq1  CCAGGCTGAGTGAGCAGATGGGTATGTGAGGCTAAGTGTGCAAGAGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGAGTGAGCAGATGGGTATGTGAGGCTAAGTGTGCAAGAGATGG  600

seq1  AATTTTCCTGGTTTGCTAACTAGGGGCCACGTGATGCCCATCCGGGTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCTGGTTTGCTAACTAGGGGCCACGTGATGCCCATCCGGGTGGG  650

seq1  GGCAGGAGGAGCCCTTCAGATGAATTTTATTGTCTTTGCCCAGATTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGGAGCCCTTCAGATGAATTTTATTGTCTTTGCCCAGATTCAGG  700

seq1  TTCCTGGTTCCCAGAAAGGAAGTTGCAGCAGGATAAGAAAAGCATCGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTTCCCAGAAAGGAAGTTGCAGCAGGATAAGAAAAGCATCGTCC  750

seq1  ACAGCCGGCTTGGCCCTCCTCCCAAGACCCAAGTCAGAGGAGTCAA-GGG  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACAGCCGGCTTGGCCCTCCTCCCAAGACCCAAGTCAGAGGAGTCAAGGGG  800

seq1  GAAGAGACAGCTGACTGGCTGGTGCTCTTTCCTCTTTACAGAGCTAGCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACAGCTGACTGGCTGGTGCTCTTTCCTCTTTACAGAGCTAGCCC  850

seq1  -TTCTGCAAGGCAATAGGGTCCAGCTGCCTAGCC-TGGGAGTCAGGAGCC  897
       ||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  TTTCTGCAAGGCAATA-GGTCCAGCTGCCTAGCCTTGGGAGTCAGGAGCC  899

seq1  CTGGGCCCTGGTGCTA-CTTTGAGGGGAC-TTTAGGTAGC-TCAGT-CAC  943
      ||||| |||||||||| |||||||||||| |||| ||||| ||| | |||
seq2  CTGGG-CCTGGTGCTACCTTTGAGGGGACTTTTAAGTAGCTTCATTCCAC  948

seq1  TTCTTG-AGCCTCTGTTGTGACAGGTCGGTGACACCAAGTC-TTACTCCA  991
      |||||| |||||||||||||||||||||||||||||||||| ||||| ||
seq2  TTCTTGAAGCCTCTGTTGTGACAGGTCGGTGACACCAAGTCTTTACT-CA  997

seq1  ACGGCCCTTA-GGTTCTG-TTGGCAATCACTGAAAAAGCTC-TGACT-GA  1037
      |||||| ||| ||||||| ||| |||||||||||||||||| ||||| ||
seq2  ACGGCCTTTAGGGTTCTGTTTGCCAATCACTGAAAAAGCTCTTGACTGGA  1047

seq1  AGGAGTTCATCTCAT-CTCTAATGATGGCCGG-CCTAGA  1074
       | |||  ||||||| |||  ||||||||||| ||||||
seq2  TGAAGTCAATCTCATCCTCCTATGATGGCCGGTCCTAGA  1086