BAC Information

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BAC

Clone NameB6Ng01-232P20
Chromosome4 (Build37)
Map Location 118,239,407 - 118,240,313
singlet/doubletsinglet
Overlap gene1110020C03Rik
Upstream genePrnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik
Downstream geneEbna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232P20.b
ACCGA045181
length916
definitionB6Ng01-232P20.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgctaatggggttcatctatgcgagacaaagacaaccctgtc
ccagaagcactctgatctacgttcaggatgaaccacatttcttggcaaca
cgacccaaggctaagagccgttccaatgggctcttgctgcctcggacact
ctgcaaaacactgaggtctgtggattcaggaactccccgctctcaacccc
accccattctctgctttttctcaagctcttgtctctgcccagaagcagga
cccttctcccagctggccctcagccactgtccacccaccctggggccaga
ctccagtggccctctgagacttcaaggaccgtgtttccctgatgggccca
tgccactggatatacataatggcccatgttttccagaagctctcagaggg
tgggaatactttgtattgatcttggaattctctgtggctgagacccagct
tgtgcaagaggacatgaagacaatgtgtagggaaggataaggtgcgtgtt
ctaggtgtttgtattgcacagcaactctgatttccatatttgtataagca
tgccagggaatggtgtggggaggccctgagctcctatctggatatacaaa
tgagatggtggcctcattcgttttccttcggttattttccagtgagttgc
tcagccaccatgcctgccttggctttctttggcctgtgtgggataaagtg
ttggggccctggtagccacgcaggcagttcctaaccaccacatactaagg
cacccagggcccctagccagcaccttggtgtatgcatctggaaatcagta
gtgctcttctttcctacccccaggccacaggcctccctggcctatgaatt
ggtggactttcagaactcatttttccccctacagttaatcctggacttga
tttctctgtctgggga
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118239407_118240313
seq2: B6Ng01-232P20.b_42_956

seq1  GAATTCTCTGCTAATGGGGTTCATCTATGCGAGACAAAGACAACCCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTAATGGGGTTCATCTATGCGAGACAAAGACAACCCTGTC  50

seq1  CCAGAAGCACTCTGATCTACGTTCAGGATGAACCACATTTCTTGGCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCACTCTGATCTACGTTCAGGATGAACCACATTTCTTGGCAACA  100

seq1  CGACCCAAGGCTAAGAGCCGTTCCAATGGGCTCTTGCTGCCTCGGACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCCAAGGCTAAGAGCCGTTCCAATGGGCTCTTGCTGCCTCGGACACT  150

seq1  CTGCAAAACACTGAGGTCTGTGGATTCAGGAACTCCCCGCTCTCAACCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAACACTGAGGTCTGTGGATTCAGGAACTCCCCGCTCTCAACCCC  200

seq1  ACCCCATTCTCTGCTTTTTCTCAAGCTCTTGTCTCTGCCCAGAAGCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATTCTCTGCTTTTTCTCAAGCTCTTGTCTCTGCCCAGAAGCAGGA  250

seq1  CCCTTCTCCCAGCTGGCCCTCAGCCACTGTCCACCCACCCTGGGGCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCCCAGCTGGCCCTCAGCCACTGTCCACCCACCCTGGGGCCAGA  300

seq1  CTCCAGTGGCCCTCTGAGACTTCAAGGACCGTGTTTCCCTGATGGGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGGCCCTCTGAGACTTCAAGGACCGTGTTTCCCTGATGGGCCCA  350

seq1  TGCCACTGGATATACATAATGGCCCATGTTTTCCAGAAGCTCTCAGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGGATATACATAATGGCCCATGTTTTCCAGAAGCTCTCAGAGGG  400

seq1  TGGGAATACTTTGTATTGATCTTGGAATTCTCTGTGGCTGAGACCCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATACTTTGTATTGATCTTGGAATTCTCTGTGGCTGAGACCCAGCT  450

seq1  TGTGCAAGAGGACATGAAGACAATGTGTAGGGAAGGATAAGGTGCGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAGAGGACATGAAGACAATGTGTAGGGAAGGATAAGGTGCGTGTT  500

seq1  CTAGGTGTTTGTATTGCACAGCAACTCTGATTTCCATATTTGTATAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGTTTGTATTGCACAGCAACTCTGATTTCCATATTTGTATAAGCA  550

seq1  TGCCAGGGAATGGTGTGGGGAGGCCCTGAGCTCCTATCTGGATATACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGGAATGGTGTGGGGAGGCCCTGAGCTCCTATCTGGATATACAAA  600

seq1  TGAGATGGTGGCCTCATTCGTTTTCC-TCGGTTATTTTCCAGTGAGTTGC  649
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAGATGGTGGCCTCATTCGTTTTCCTTCGGTTATTTTCCAGTGAGTTGC  650

seq1  TCAGCCACCATGCCTGCCTTGGCTTTCTTTGGCCTGTGTGGGATAAAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCACCATGCCTGCCTTGGCTTTCTTTGGCCTGTGTGGGATAAAGTG  700

seq1  TTGGGGCCCTGGTAGCCACGCAGGCAGTTCCTAACCACCACATACTAAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCCCTGGTAGCCACGCAGGCAGTTCCTAACCACCACATACTAAGG  750

seq1  CACCCAGGGCCCCTAGCCAGCACCTGGGTGTATGCATCTGG-AATCAGTA  798
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  CACCCAGGGCCCCTAGCCAGCACCTTGGTGTATGCATCTGGAAATCAGTA  800

seq1  GTGCTCTTCTTTCCTA-CCCCAGGCCACAGGCCTCCCTGGCCCATGAA-T  846
      |||||||||||||||| ||||||||||||||||||||||||| ||||| |
seq2  GTGCTCTTCTTTCCTACCCCCAGGCCACAGGCCTCCCTGGCCTATGAATT  850

seq1  GGTGGACTTTCAG-ACTCATTTTTCCCCCCACAG-TGATTCTTGAC-TGA  893
      ||||||||||||| ||||||||||||||| |||| | || || ||| |||
seq2  GGTGGACTTTCAGAACTCATTTTTCCCCCTACAGTTAATCCTGGACTTGA  900

seq1  TTTCTTTG-CTGGGG  907
      ||||| || ||||||
seq2  TTTCTCTGTCTGGGG  915