BAC Information

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BAC

Clone NameB6Ng01-233A03
Chromosome4 (Build37)
Map Location 145,079,745 - 145,207,002
singlet/doubletdoublet
Overlap geneLOC622846, LOC666314, LOC545701
Upstream gene9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576
Downstream geneOTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233A03.bB6Ng01-233A03.g
ACCGA045193GA045194
length9601,166
definitionB6Ng01-233A03.b B6Ng01-233A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,079,745 - 145,080,356)(145,205,634 - 145,207,002)
sequence
gaattctgcaatgtggacttcttgcagatgtgggaatgcttagaccctgc
actcagggtctttttcagagacctcttgttggagaagatcaactgtctgc
attctttttttttcattttttattagatattttcttcatttacatttcaa
atgctatcctgaaagtcccttttaccctccccctgccgtgctcccctacc
cacccattcccacttcttggccctgatgttcccctgtactgggacatata
aagtttgcaagaccaaggggcctctcttcccaatgatggcagactgggcc
atcttctgctacatatgcagctagagacacgagctcaggggggtactggt
tagttcacgttgttgttccacgtataggttgcagaccccttcagttcctt
gggttctatctcttcctcctccattgggggccctgtgttccatccaatag
atgactgtgagcatccacttctatatttgccaggcactgacatagcctca
caagagacagctatatcagggtcctttcagcaaaatcttgctggtgtatg
caatagtgtctgcttttggtggctgattatgggatggatccccaggtgga
gcagtctctggatggtccttcctttactctcagctccaaactctttctct
ttaactccttccacgggtattatgtttcctattctaagacggaatgaagt
atccacacattggtctttcttcttaattttcttgcgttttgcaaattgta
tcttgggtactctaagtttctgggctaatattcacttatcagtgagtgca
tatcaagtgagttcttttgtgattgggttacctctcaggatgatctcctc
cagatacatatatttacctaagaatttcataaattcattgtttttaatag
ctgagtagtactccatcatgtaaatgtaccacattttctgtatccattcc
tctgttgagg
gaattcttcttgaaatttcacatcaaggtctgaatgattcagagatgaaa
taaatacaacaccattacagacaatggtaaacaacatttatatatatata
aacattaaaagcaaaatgataccaggaatcttgaaaatgtgcagtcatga
aagtaagtaatgatatatttagactgtaagtgtaacctagttcctcccac
caccctagattctcaaagtttattcacaacacctgatatggaaatccctg
tcacctgacctaaatgacacacagcaaaagaaaattgagaggctgtagct
aaagcaatttgacaatgttaataaaatttccctaccccaaatcactaatg
caataccaattctcatgacaaaatgaattatgaaacaaactcaaaatata
atctgaacaccattcaatgtggacaaatgacataaagagggaacaagcac
aggaattcaaagaaggcagaaacaaacttaatgaaattccagagaattcc
tacaagtgggtaagagaataattatacatatgcaggatgtgaacatctta
tccagagatataaaaatctaaggaatgctcactctgaaataaattctgta
agcctggtggtaactcaatggccaatatgtgaagatacaccattcaaaca
aacaatcaaacaaacaaacaaacaaaaaatcagctcatcaatgaaaggtc
tttcatcctagctgtcagggatgtgacctaaaagccattctggtctctat
atcacgacatgtgaaagttagaaatagagtgtgggaccctgttttacaaa
caaacaaacacacaaacaaacaaacaggaaacccatacaaaaaaattaga
gctttgtcttctacattgatatcaaaatcaatttaaaaagtacaaggata
ttagaaaggctgattctcctattggataatacttttatcttttaaagttg
ggtcctcagtgggtcacatcgtttgaggaatttagctgttggaacattac
tgaataaagtatgacactggggggttgactatgagaaaaaggaatagaat
agatccaagcatctaaattctttctctcttagtgactgggggttgaagaa
tgtggatcttcacgttctacttcaaccaacatggcatgttctaatacagt
cctcctggtcatggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145079745_145080356
seq2: B6Ng01-233A03.b_48_659

seq1  GAATTCTGCAATGTGGACTTCTTGCAGATGTGGGAATGCTTAGACCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAATGTGGACTTCTTGCAGATGTGGGAATGCTTAGACCCTGC  50

seq1  ACTCAGGGTCTTTTTCAGAGACCTCTTGTTGGAGAAGATCAACTGTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGGTCTTTTTCAGAGACCTCTTGTTGGAGAAGATCAACTGTCTGC  100

seq1  ATTCTTTTTTTTTCATTTTTTATTAGATATTTTCTTCATTTACATTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTTTTTCATTTTTTATTAGATATTTTCTTCATTTACATTTCAA  150

seq1  ATGCTATCCTGAAAGTCCCTTTTACCCTCCCCCTGCCGTGCTCCCCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCCTGAAAGTCCCTTTTACCCTCCCCCTGCCGTGCTCCCCTACC  200

seq1  CACCCATTCCCACTTCTTGGCCCTGATGTTCCCCTGTACTGGGACATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATTCCCACTTCTTGGCCCTGATGTTCCCCTGTACTGGGACATATA  250

seq1  AAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCAGACTGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCAGACTGGGCC  300

seq1  ATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCAGGGGGGTACTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCAGGGGGGTACTGGT  350

seq1  TAGTTCACGTTGTTGTTCCACGTATAGGTTGCAGACCCCTTCAGTTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCACGTTGTTGTTCCACGTATAGGTTGCAGACCCCTTCAGTTCCTT  400

seq1  GGGTTCTATCTCTTCCTCCTCCATTGGGGGCCCTGTGTTCCATCCAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTATCTCTTCCTCCTCCATTGGGGGCCCTGTGTTCCATCCAATAG  450

seq1  ATGACTGTGAGCATCCACTTCTATATTTGCCAGGCACTGACATAGCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTGAGCATCCACTTCTATATTTGCCAGGCACTGACATAGCCTCA  500

seq1  CAAGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGTGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGTGTATG  550

seq1  CAATAGTGTCTGCTTTTGGTGGCTGATTATGGGATGGATCCCCAGGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTGTCTGCTTTTGGTGGCTGATTATGGGATGGATCCCCAGGTGGA  600

seq1  GCAGTCTCTGGA  612
      ||||||||||||
seq2  GCAGTCTCTGGA  612

seq1: chr4_145205634_145207002
seq2: B6Ng01-233A03.g_65_1230 (reverse)

seq1  TCCCATGACCTAACATACTTCCTGTTCTTGATTAGGATTCAGAATATGAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATGAATTCTCTCTCTGAAAGGCAGCCTTAAATCCAATCAGAATATGTTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACTGTAATTGGTTTTTTTTCTGCTGCTTTCATAAAGCACCATGTTCAAGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  AAACTAATAGAAGAAAAAGACTACTTTGGGTAATGCTTCCAGAGGATAGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  CATCAACCATGACAGGGAGGACTG--ATAGAACATTGCCATGTT-GTTGA  247
        ||  |||||||  |||||||||   ||||||| ||||||||| |||||
seq2  --TC--CCATGACCAGGAGGACTGTATTAGAACA-TGCCATGTTGGTTGA  45

seq1  AGTAGAAAGGTGAAAGAT-CACA-TCTTCAA-CCCCAGTCACTAAAGAGG  294
      ||||| || ||| ||||| |||| ||||||| ||||||||||| ||||| 
seq2  AGTAG-AACGTG-AAGATCCACATTCTTCAACCCCCAGTCACT-AAGAG-  91

seq1  AAGAAAGAATTAAGATGGCTTGGATCTA-TCTATCCTTTTTTCTCATAGT  343
       |||||||||| |||| ||||||||||| ||||| | |||||||||||||
seq2  -AGAAAGAATTTAGAT-GCTTGGATCTATTCTATTCCTTTTTCTCATAGT  139

seq1  CAA-CCCCCAGTGTCATACTTTATTCAGTAATGTTCCAACAGCTAAATTC  392
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCCCAGTGTCATACTTTATTCAGTAATGTTCCAACAGCTAAATTC  189

seq1  CTCAAACGATTGTGACCCACTGAGGACCCAACTTTAAAAGATAAAAGTAT  442
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACGA-TGTGACCCACTGAGGACCCAACTTTAAAAGATAAAAGTAT  238

seq1  TATCCAATAGGAGAATCAGCC-TTCTAATATCCTTGTACTTTTTAAATTG  491
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATCCAATAGGAGAATCAGCCTTTCTAATATCCTTGTACTTTTTAAATTG  288

seq1  ATTTTGATATCAATGTAGAAGACAAAGCTCTAATTTTTTTGTATGGGTTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATATCAATGTAGAAGACAAAGCTCTAATTTTTTTGTATGGGTTT  338

seq1  CCTGTTTGTTTGTTTGTGTGTTTGTTTGTTTGTAAAACAGGGTCCCACAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTGTTTGTTTGTGTGTTTGTTTGTTTGTAAAACAGGGTCCCACAC  388

seq1  TCTATTTCTAACTTTCACATGTCCTGATATAGAGACCAGAATGGCTTTTA  641
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTATTTCTAACTTTCACATGTCGTGATATAGAGACCAGAATGGCTTTTA  438

seq1  GGTCACATCCCTGACAGCTAGGATGAAAGACCTTTCATTGATGAGCTGAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACATCCCTGACAGCTAGGATGAAAGACCTTTCATTGATGAGCTGAT  488

seq1  TTTTTGTTTGTTTGTTTGTTTGATTGTTTGTTTGAATGGTGTATCTTCAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTGTTTGTTTGTTTGATTGTTTGTTTGAATGGTGTATCTTCAC  538

seq1  ATATTGGCCATTGAGTTACCACCAGGCTTACAGAATTTATTTCAGAGTGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGCCATTGAGTTACCACCAGGCTTACAGAATTTATTTCAGAGTGA  588

seq1  GCATTCCTTAGATTTTTATATCTCTGGATAAGATGTTCACATCCTGCATA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCTTAGATTTTTATATCTCTGGATAAGATGTTCACATCCTGCATA  638

seq1  TGTATAATTATTCTCTTACCCACTTGTAGGAATTCTCTGGAATTTCATTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATTATTCTCTTACCCACTTGTAGGAATTCTCTGGAATTTCATTA  688

seq1  AGTTTGTTTCTGCCTTCTTTGAATTCCTGTGCTTGTTCCCTCTTTATGTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTTCTGCCTTCTTTGAATTCCTGTGCTTGTTCCCTCTTTATGTC  738

seq1  ATTTGTCCACATTGAATGGTGTTCAGATTATATTTTGAGTTTGTTTCATA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCACATTGAATGGTGTTCAGATTATATTTTGAGTTTGTTTCATA  788

seq1  ATTCATTTTGTCATGAGAATTGGTATTGCATTAGTGATTTGGGGTAGGGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTGTCATGAGAATTGGTATTGCATTAGTGATTTGGGGTAGGGA  838

seq1  AATTTTATTAACATTGTCAAATTGCTTTAGCTACAGCCTCTCAATTTTCT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATTAACATTGTCAAATTGCTTTAGCTACAGCCTCTCAATTTTCT  888

seq1  TTTGCTGTGTGTCATTTAGGTCAGGTGACAGGGATTTCCATATCAGGTGT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTGTGTCATTTAGGTCAGGTGACAGGGATTTCCATATCAGGTGT  938

seq1  TGTGAATAAACTTTGAGAATCTAGGGTGGTGGGAGGAACTAGGTTACACT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAAACTTTGAGAATCTAGGGTGGTGGGAGGAACTAGGTTACACT  988

seq1  TACAGTCTAAATATATCATTACTTACTTTCATGACTGCACATTTTCAAGA  1241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTAAATATATCATTACTTACTTTCATGACTGCACATTTTCAAGA  1038

seq1  TTCCTGGTATCATTTTGCTTTTAATGTTTATATATATATAAATGTTGTTT  1291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTATCATTTTGCTTTTAATGTTTATATATATATAAATGTTGTTT  1088

seq1  ACCATTGTCTGTAATGGTGTTGTATTTATTTCATCTCTGAATCATTCAGA  1341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGTCTGTAATGGTGTTGTATTTATTTCATCTCTGAATCATTCAGA  1138

seq1  CCTTGATGTGAAATTTCAAGAAGAATTC  1369
      ||||||||||||||||||||||||||||
seq2  CCTTGATGTGAAATTTCAAGAAGAATTC  1166