BAC Information

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BAC

Clone NameB6Ng01-233P14
Chromosome4 (Build37)
Map Location 97,522,287 - 97,657,449
singlet/doubletdoublet
Overlap geneNfia
Upstream geneLOC620883, EG638698
Downstream geneLOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1, Dock7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233P14.bB6Ng01-233P14.g
ACCGA045872GA045873
length1,1541,114
definitionB6Ng01-233P14.b B6Ng01-233P14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,656,276 - 97,657,449)(97,522,287 - 97,523,397)
sequence
gaattcaatccccagagcaacactatgggtgttggccttcgttttatggg
agtgtctgccaaactcacatatttgtagaactattggtttatgttgttct
ttgcagctctcagagaaggaaggaccactgcgtgggatcttagttcactt
taggactgggtctggctggtgacaggtacacatgataaatgttccagaag
gctgacctaatttccgttgaagagagtgttttgctaagaacattccctca
aagtgtcggcttgcagcagagtcccaaacctgccagtgtctgctaccatt
gcttgggaaactttacttaaagtgaagttaattttgctgtgtttagcaaa
tttctccagtattaacttttaatgtatacaggttttaagcctaatttcag
gtgtgcaataataaaaaatgctacttgtgatagtttttagttattcgtat
tttttcttgtatagaagtaactataggcacaaatgttctcttattttgtc
attcaaaaactatgtttgccaggtattacttatacatagtaaagtaggag
acaaaccatggatgtgagactcctagattacactgttaaattctaatttc
tttatctataaaatggcactaactgttatatctaccacagaaggttttgt
tgttaaaaataatgatctagtaaattttgaatgtttagcaaagaaccttg
agtatagagtgtcacagagtagctcacatcatgaatcttatataaattgt
aatagaaaaaaaaaactagttacttctgtccttttgacatggacattaaa
tattcacatatgtgcataaatgaaaacattggtagtttatttattttatt
tatttgagtaaattttggggtgaaataagattactttccaaagcaaataa
cacaaaatttgctgaaaacaaacctcctgatatatttttactggccttgt
ttaaaataaagggattccgcctggcagttggttggcacacaccttttaat
ccagcactcgaaaggcagagcagcgatttctgagtttgagcaagcttgtc
tacaagtgagttcagggacagccagggctcccagagacctgccctcaaac
aattatgaataattttaaaaggatcagtacgttaaagcttagattaatcc
ctaa

gaattcatttgtacttcagcctgtattgtaacagccagctcttcctgatg
tttctgtgggctcaactgaatgtgagaagggctccaccatttctgtctgg
ttgggctctgtagtcctctgccttgtattccaggtgagctccattcctgt
agctgttgcgatgacaaagaacaaagcaacctaagggagaaagagtttgt
tctggctcacagctccttagttccatttgctgtgacactgtgaacttggc
ctttctcgctctctaggatttgggtgtttgtcctgcctgtctcttggaag
gcatggtcacaaatgacgtagatagccaatctgaactgtgcagagaacct
gtacacagtctggtggagtcctcatctggacccatagagctatcttggag
aactcattcacacagtctctagtactatcaactgtcattctcattgggta
ttcaaaggcacctctgacccaaaagaagttgagtgatctccctaaaggct
tgattaagtggaggtacattgcttgacgagttcatggcggttcagaatca
tttgcctggtggggaggaggagagacagctgtgaacgtaggcgtagagga
aagcctaggttagactcctggctgctgtggtgcacctgggcaagttatag
ccaaggctgatgttgtaagattgggccagaaacttacattgctagtaaag
gcctaggcaggcacccagtattagtcatttcccagcactgcagatattgt
aaggttttgagatgttaaggattagtgcgctttttgcctctgggtaaagt
ctttctccactgatccttctgataactacaggatgcgtgcaccacatatt
tctttctggcaaaactcttcttcatggctgtggtaggaacctttaggaga
tggtctgcaacgagcaaaatattactctcactgccgccttgatgggtgga
atactcgtcacaaggctgaccttagcctcatggaatggagcactggcaaa
gggtgtcaggttgcgagccttaagggaacaaaactttcttttataataag
gaacagtgaacaggtctcttagttgttttaggacatggacggagagagag
attgttcctcaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_97656276_97657449
seq2: B6Ng01-233P14.b_46_1199 (reverse)

seq1  TTAGGGATTATATTTATACCTATTTAACGTAACTTAGAATCTCTTTTTAA  50
      |||||||||| || ||  |   |||||||| ||| |     || ||||||
seq2  TTAGGGATTA-ATCTAAGC---TTTAACGT-ACTGA-----TCCTTTTAA  40

seq1  AATTTATTTATTTATTTGTTTTTGAGGCAGGGTTTCTCTGTGTAGCCCTG  100
      || ||||| |  || ||||||  | ||||||   |||||| | |||||||
seq2  AA-TTATTCA--TAATTGTTTGAG-GGCAGG---TCTCTG-GGAGCCCTG  82

seq1  GCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAAT  150
      |||||||  |||||||| |||||||| ||  ||  |||||||||||||||
seq2  GCTGTCCCTGAACTCAC-TTGTAGACAAGCTTG--CTCAAACTCAGAAAT  129

seq1  CCGCCTGCCTCTGCCTTCCGAGTGCTGGGATTAAAGGTGTGTGCCA--CC  198
      |   ||| ||||||||| ||||||||||  | ||||||||||||||  | 
seq2  C--GCTG-CTCTGCCTTTCGAGTGCTGGATTAAAAGGTGTGTGCCAACCA  176

seq1  ACTGCCAGGCCGAATCCCTTTATTTTTAAACAA-GCCAGT-AAAATATAT  246
      |||||||||| ||||||||||| |||||||||| |||||| |||||||||
seq2  ACTGCCAGGCGGAATCCCTTTA-TTTTAAACAAGGCCAGTAAAAATATAT  225

seq1  CAGGAGGTTTGTTTTCAGCAAATTTTGTGTTATTTGCTTTGGAAAGTAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGTTTGTTTTCAGCAAATTTTGTGTTATTTGCTTTGGAAAGTAAT  275

seq1  CTTATTTCACCCCAAAATTTACTCAAATAAATAAAATAAATAAACTACCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCACCCCAAAATTTACTCAAATAAATAAAATAAATAAACTACCA  325

seq1  ATGTTTTCATTTATGCACATATGTGAATATTTAATGTCCATGTCAAAAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCATTTATGCACATATGTGAATATTTAATGTCCATGTCAAAAGG  375

seq1  ACAGAAGTAACTAG-TTTTTTTTTCTATTACAATTTATATAAGATTCATG  445
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTAACTAGTTTTTTTTTTCTATTACAATTTATATAAGATTCATG  425

seq1  ATGTGAGCTACTCTGTGACACTCTATACTCAAGGTTCTTTGCTAAACATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGCTACTCTGTGACACTCTATACTCAAGGTTCTTTGCTAAACATT  475

seq1  CAAAATTTACTAGATCATTATTTTTAACAACAAAACCTTCTGTGGTAGAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTACTAGATCATTATTTTTAACAACAAAACCTTCTGTGGTAGAT  525

seq1  ATAACAGTTAGTGCCATTTTATAGATAAAGAAATTAGAATTTAACAGTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGTTAGTGCCATTTTATAGATAAAGAAATTAGAATTTAACAGTGT  575

seq1  AATCTAGGAGTCTCACATCCATGGTTTGTCTCCTACTTTACTATGTATAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGGAGTCTCACATCCATGGTTTGTCTCCTACTTTACTATGTATAA  625

seq1  GTAATACCTGGCAAACATAGTTTTTGAATGACAAAATAAGAGAACATTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACCTGGCAAACATAGTTTTTGAATGACAAAATAAGAGAACATTTG  675

seq1  TGCCTATAGTTACTTCTATACAAGAAAAAATACGAATAACTAAAAACTAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATAGTTACTTCTATACAAGAAAAAATACGAATAACTAAAAACTAT  725

seq1  CACAAGTAGCATTTTTTATTATTGCACACCTGAAATTAGGCTTAAAACCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTAGCATTTTTTATTATTGCACACCTGAAATTAGGCTTAAAACCT  775

seq1  GTATACATTAAAAGTTAATACTGGAGAAATTTGCTAAACACAGCAAAATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATTAAAAGTTAATACTGGAGAAATTTGCTAAACACAGCAAAATT  825

seq1  AACTTCACTTTAAGTAAAGTTTCCCAAGCAATGGTAGCAGACACTGGCAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCACTTTAAGTAAAGTTTCCCAAGCAATGGTAGCAGACACTGGCAG  875

seq1  GTTTGGGACTCTGCTGCAAGCCGACACTTTGAGGGAATGTTCTTAGCAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGACTCTGCTGCAAGCCGACACTTTGAGGGAATGTTCTTAGCAAA  925

seq1  ACACTCTCTTCAACGGAAATTAGGTCAGCCTTCTGGAACATTTATCATGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTCTTCAACGGAAATTAGGTCAGCCTTCTGGAACATTTATCATGT  975

seq1  GTACCTGTCACCAGCCAGACCCAGTCCTAAAGTGAACTAAGATCCCACGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGTCACCAGCCAGACCCAGTCCTAAAGTGAACTAAGATCCCACGC  1025

seq1  AGTGGTCCTTCCTTCTCTGAGAGCTGCAAAGAACAACATAAACCAATAGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCCTTCCTTCTCTGAGAGCTGCAAAGAACAACATAAACCAATAGT  1075

seq1  TCTACAAATATGTGAGTTTGGCAGACACTCCCATAAAACGAAGGCCAACA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAATATGTGAGTTTGGCAGACACTCCCATAAAACGAAGGCCAACA  1125

seq1  CCCATAGTGTTGCTCTGGGGATTGAATTC  1174
      |||||||||||||||||||||||||||||
seq2  CCCATAGTGTTGCTCTGGGGATTGAATTC  1154


seq1: chr4_97522287_97523397
seq2: B6Ng01-233P14.g_66_1179

seq1  GAATTCATTTGTACTTCAGCCTGTATTGTAACAGCCAGCTCTTCCTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTACTTCAGCCTGTATTGTAACAGCCAGCTCTTCCTGATG  50

seq1  TTTCTGTGGGCTCAACTGAATGTGAGAAGGGCTCCACCATTTCTGTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGGGCTCAACTGAATGTGAGAAGGGCTCCACCATTTCTGTCTGG  100

seq1  TTGGGCTCTGTAGTCCTCTGCCTTGTATTCCAGGTGAGCTCCATTCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTCTGTAGTCCTCTGCCTTGTATTCCAGGTGAGCTCCATTCCTGT  150

seq1  AGCTGTTGCGATGACAAAGAACAAAGCAACCTAAGGGAGAAAGAGTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTGCGATGACAAAGAACAAAGCAACCTAAGGGAGAAAGAGTTTGT  200

seq1  TCTGGCTCACAGCTCCTTAGTTCCATTTGCTGTGACACTGTGAACTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCACAGCTCCTTAGTTCCATTTGCTGTGACACTGTGAACTTGGC  250

seq1  CTTTCTCGCTCTCTAGGATTTGGGTGTTTGTCCTGCCTGTCTCTTGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCGCTCTCTAGGATTTGGGTGTTTGTCCTGCCTGTCTCTTGGAAG  300

seq1  GCATGGTCACAAATGACGTAGATAGCCAATCTGAACTGTGCAGAGAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTCACAAATGACGTAGATAGCCAATCTGAACTGTGCAGAGAACCT  350

seq1  GTACACAGTCTGGTGGAGTCCTCATCTGGACCCATAGAGCTATCTTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGTCTGGTGGAGTCCTCATCTGGACCCATAGAGCTATCTTGGAG  400

seq1  AACTCATTCACACAGTCTCTAGTACTATCAACTGTCATTCTCATTGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATTCACACAGTCTCTAGTACTATCAACTGTCATTCTCATTGGGTA  450

seq1  TTCAAAGGCACCTCTGACCCAAAAGAAGTTGAGTGATCTCCCTAAAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGCACCTCTGACCCAAAAGAAGTTGAGTGATCTCCCTAAAGGCT  500

seq1  TGATTAAGTGGAGGTACATTGCTTGACGAGTTCATGGCGGTTCAGAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAGTGGAGGTACATTGCTTGACGAGTTCATGGCGGTTCAGAATCA  550

seq1  TTTGCCTGGTGGGGAGGAGGAGAGACAGCTGTGAACGTAGGCGTAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGGTGGGGAGGAGGAGAGACAGCTGTGAACGTAGGCGTAGAGGA  600

seq1  AAGCCTAGGTTAGACTCCTGGCTGCTGTGGTGCACCTGGGCAAGTTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGGTTAGACTCCTGGCTGCTGTGGTGCACCTGGGCAAGTTATAG  650

seq1  CCAAGGCTGATGTTGTAAGATTGGGCCAGAAACTTACATTGCTAGTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTGATGTTGTAAGATTGGGCCAGAAACTTACATTGCTAGTAAAG  700

seq1  GCCTAGGCAGGCACCCAGTATTAGTCATTTCCCAGCACTGCAGATATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGCAGGCACCCAGTATTAGTCATTTCCCAGCACTGCAGATATTGT  750

seq1  AAGGTTTTGAGATGTTAAGGATTAGTGCGC-TTTTGCCTCTGGGTAAAGT  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGGTTTTGAGATGTTAAGGATTAGTGCGCTTTTTGCCTCTGGGTAAAGT  800

seq1  CTTTCTCCACTGATCCTTCTGATAACTACAGGATGCGTGCACCACATATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCACTGATCCTTCTGATAACTACAGGATGCGTGCACCACATATT  850

seq1  TCTTTCTGGCAAAACTCTTCTTCATGGCTGTGGTAGGAACC-TTAGGAGA  898
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTTTCTGGCAAAACTCTTCTTCATGGCTGTGGTAGGAACCTTTAGGAGA  900

seq1  TGGTCTGCAACGAGC-AAATATTACTCTCACTGCCGCCTTGATGGGTGG-  946
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  TGGTCTGCAACGAGCAAAATATTACTCTCACTGCCGCCTTGATGGGTGGA  950

seq1  ATACTCGTCACAAGGCTGACC-TAGCCTCATGG-ATGGAGCACTGGCAAA  994
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  ATACTCGTCACAAGGCTGACCTTAGCCTCATGGAATGGAGCACTGGCAAA  1000

seq1  -GGTGTCAGGGTTTGCCGAGCCTTTAAAGGAAC-AGACTTTCTTTTATTA  1042
       |||||||||  ||| |||||| |||| ||||| | ||||||||||| ||
seq2  GGGTGTCAGG--TTG-CGAGCC-TTAAGGGAACAAAACTTTCTTTTA-TA  1045

seq1  ATAAG--ACAGTG-ACAGGTCTCTTAGTTTGTTTAAGAGAGAGGACGGGA  1089
      |||||  |||||| |||||||||||||||  |||| || |  |||| |||
seq2  ATAAGGAACAGTGAACAGGTCTCTTAGTTGTTTTAGGACA-TGGAC-GGA  1093

seq1  GAGAGAGATTGTTTCCTCAATA  1111
      ||||||||||| ||||||||||
seq2  GAGAGAGATTG-TTCCTCAATA  1114


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