BAC Information

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BAC

Clone NameB6Ng01-234H08
Chromosome4 (Build37)
Map Location 143,094,118 - 143,307,807
singlet/doubletdoublet
Overlap geneOTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333
Upstream geneLOC546484, 6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700
Downstream geneLOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234H08.bB6Ng01-234H08.g
ACCGA046220GA046221
length1,021488
definitionB6Ng01-234H08.b B6Ng01-234H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,307,266 - 143,307,807)(143,094,118 - 143,094,610)
sequence
gaattctttgcttttattgctactggtgatggctacaaaaggagtacaga
ggtcagtttggcaaaatgttaccaaagcaaagacagaaatcacaaatgaa
tagtgacaactcagatttggacagagcaaagactgtagaggagaaagata
tttgacatccactagtgtccttttattgcaagatgatctatgaaggctat
ggccccataagcatgtgatgtgaacactgggtgtggtagtacagcacgca
gtgagacaaagttggtgaatgaggagctgtgagttgcatccaatctgctc
ctatctcctttttagagttcaaagaattccttgtctctacaggagttgct
cactctaactgccaaacatgtgattcatcccaaaactaaacaaagaaata
tttcagaatagctgatcacacagggaaaactgatactgtgttatttacag
aaaaaaattctacatgtggtgtgatcaagcacttaacacacacctttaat
ctcttggataggatatggatgcacccttagtaaaaacctttaataccaaa
aaataaattaaggtaaagttagtttgttgtagaacgaagcacccattttt
gaaagtgatgtataattgagtggcagacaaagtgacaaatcaaagaaaga
tgcccaaccctcatgaacataaagaggaaagagaagctacttcacaggct
gtacagacagagagagcaagctcttaggttgaaacaattctacagagaca
aattacagagagtgagtaagctacatacatgggaaaactaaatgaaccag
agaatgagaaggatgagtttaatatatatttttttaagttagtatgagaa
aaatgcactcaaaagcccagataactcagattgaattaatcagctcaggc
agagtttgaagaagaaaagatgagttgaaccagtttagtcaacagttcag
aaagtataaaaaaaggctaagcttgttcagcagaaaatctcaaagctgaa
aacattctaggatctaaatga
attctctggataaggtttttatggattctagccatgtcctccatgaggaa
ggaagacttattgcttttagaatgcaggattcattgttttactcttgaga
aatggcaggacctactcagaaatctcttgccagtccctgccatctttaat
gcctcaggagacaaaagcttcacagccatgttttcttcttgcaccctctc
cctctcctctgtctttacttctctctctcttatgctttgtgtgtgtgtgt
gtgtgtgtgtatgtgtgtgtgtatgtacgtatgtatgtctagctctgtag
ctctggctgtttggaactcattgtggaaacaaggctagcctccatgacat
aagatccacatgcaatctgagtatggattattaaaggtgtgtactaccac
acattgcggattagctattgcttagcccagtgaatgcactggatgcagtt
atcaaaacaataagactggaatctaaagaaagaatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143307266_143307807
seq2: B6Ng01-234H08.b_46_587 (reverse)

seq1  TAAAGGTTTTTACTAAGGGTGCATCCATATCCTATCCAAGAGATTAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTTTTTACTAAGGGTGCATCCATATCCTATCCAAGAGATTAAAGG  50

seq1  TGTGTGTTAAGTGCTTGATCACACCACATGTAGAATTTTTTTCTGTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTAAGTGCTTGATCACACCACATGTAGAATTTTTTTCTGTAAAT  100

seq1  AACACAGTATCAGTTTTCCCTGTGTGATCAGCTATTCTGAAATATTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTATCAGTTTTCCCTGTGTGATCAGCTATTCTGAAATATTTCTT  150

seq1  TGTTTAGTTTTGGGATGAATCACATGTTTGGCAGTTAGAGTGAGCAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGTTTTGGGATGAATCACATGTTTGGCAGTTAGAGTGAGCAACTC  200

seq1  CTGTAGAGACAAGGAATTCTTTGAACTCTAAAAAGGAGATAGGAGCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGACAAGGAATTCTTTGAACTCTAAAAAGGAGATAGGAGCAGAT  250

seq1  TGGATGCAACTCACAGCTCCTCATTCACCAACTTTGTCTCACTGCGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCAACTCACAGCTCCTCATTCACCAACTTTGTCTCACTGCGTGCT  300

seq1  GTACTACCACACCCAGTGTTCACATCACATGCTTATGGGGCCATAGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTACCACACCCAGTGTTCACATCACATGCTTATGGGGCCATAGCCTT  350

seq1  CATAGATCATCTTGCAATAAAAGGACACTAGTGGATGTCAAATATCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATCATCTTGCAATAAAAGGACACTAGTGGATGTCAAATATCTTTC  400

seq1  TCCTCTACAGTCTTTGCTCTGTCCAAATCTGAGTTGTCACTATTCATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTACAGTCTTTGCTCTGTCCAAATCTGAGTTGTCACTATTCATTTG  450

seq1  TGATTTCTGTCTTTGCTTTGGTAACATTTTGCCAAACTGACCTCTGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTGTCTTTGCTTTGGTAACATTTTGCCAAACTGACCTCTGTACT  500

seq1  CCTTTTGTAGCCATCACCAGTAGCAATAAAAGCAAAGAATTC  542
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTAGCCATCACCAGTAGCAATAAAAGCAAAGAATTC  542

seq1: chr4_143094118_143094610
seq2: B6Ng01-234H08.g_68_561

seq1  GAATTCATTCTCTGGATAAGGTTTTTATGGATTCTAGCCATGTCCTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCTGGATAAGGTTTTTATGGATTCTAGCCATGTCCTCCAT  50

seq1  GAGGAAGGAAGACTTATTGCTTTTAGAATGCAGGATTCATTGTTTTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGAAGACTTATTGCTTTTAGAATGCAGGATTCATTGTTTTACTC  100

seq1  TTGAGAAATGGCAGGACCTACTCAGAAATCTCTTGCCAGTCCCTGCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAATGGCAGGACCTACTCAGAAATCTCTTGCCAGTCCCTGCCATC  150

seq1  TTTAATGCCTCAGGAGACAAAAGCTTCACAGCCATGTTTTCTTCTTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCCTCAGGAGACAAAAGCTTCACAGCCATGTTTTCTTCTTGCAC  200

seq1  CCTCTCCCTCTCCTCTGTCTTTACTTCTCTCTCTCTTATGCTTTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTCTCCTCTGTCTTTACTTCTCTCTCTCTTATGCTTTGTGTGT  250

seq1  GTGTGTGTGTGTGTGTATGTGTGTGTGTATGTACGTATGTATGTCTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTATGTGTGTGTGTATGTACGTATGTATGTCTAGCT  300

seq1  CTGTAGCTCTGGCTGTTTGGAACTCATTGTGGAAACAAGGCTAGCCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTCTGGCTGTTTGGAACTCATTGTGGAAACAAGGCTAGCCTCCA  350

seq1  TGACATAAGATCCACATGCAATCTGAGTATGGA-GATTAAAGGTGTGTAC  399
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  TGACATAAGATCCACATGCAATCTGAGTATGGATTATTAAAGGTGTGTAC  400

seq1  TACCACACATTGCGGAATAGCTATTGCTTAGCCCAGTGAATGCACTGGAT  449
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACCACACATTGCGGATTAGCTATTGCTTAGCCCAGTGAATGCACTGGAT  450

seq1  GCAGTTATCAGAACAATAAGACTGGAATCTAAAGAAAGAATGGA  493
      |||||||||| ||||||||||||||||||||||||||||||| |
seq2  GCAGTTATCAAAACAATAAGACTGGAATCTAAAGAAAGAATGTA  494