BAC Information

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BAC

Clone NameB6Ng01-234L08
Chromosome4 (Build37)
Map Location 78,253,121 - 78,387,350
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234L08.bB6Ng01-234L08.g
ACCGA046397GA046398
length1,1151,120
definitionB6Ng01-234L08.b B6Ng01-234L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,386,239 - 78,387,350)(78,253,121 - 78,254,255)
sequence
gaattcataaattcaatggttgttgtttgttggttgttggttagttgctt
ttgtttttttgctgttggttgctggtggttatggtttgttaagtagtcat
gtgcaaagaaacaacaacaagaaaaaattagatatcctgacagtgaagat
caaacttgccccatggaacttgatactcctaaactaatcagcaataaata
ctctaataaatgctccctcatcccctctatcagttttctctccaacctag
ttctaaaaggttgaaagtgtggagaagaatggaagaaagaaaaacccaca
cagcagcaaaagaccaatttaaaaagatgaaaagggaacttaattgcaag
aatgtaacctctaaaaacaaatataatcaattacacatttaaataaacaa
ttaaaaaaaactttttaacaactctgacctaagtctcagacatttttaaa
aaaatcacatagctattctaaaacgtaaacctttgaaactgtgatggaaa
aaaatttaggtaaatgaatagcaatagtaaacatagatatttaatgtgaa
gttctaaagttttgtataaaatttgtatattctttgggttgcttgacttc
agtatattttttattttcacaataaaattatatataagtataattttata
tttatatattgtatatttataatcatataattttatgtttataagtatta
taatgaccaatatcattataacaactacccggtctgtatatcagacctta
taaaaatagttctcatatctaaatgtaaaatttaaacttgaggttgtaag
ggaaaactggatgaatcattaggctgaatgaaattgaaaagaaatactgg
aaagaagaaagattggtgcatcatgttttagaggaaaatacagatctcat
tagacattaaggagactttgacagatattttggccaaggatatggctttt
tctgcatatatcctgagaactggactgatgtagaatttaaaattaatgta
ataaattgtgtagggagaggtttgagtagccttaagaagtttcagattag
gagcatgaagctaaaatagcagctgtactcttaaaaaagaattggcacca
tttaaagaaacttgc

gaattctctgcagcttctttctccttatgccaaggaaatcttaaatatag
agttctcgttgcaataatggttcctttgatgagacttttcttggagtcct
tcctccttcagcctggggactgtctgttctgtttgaatatctttctttag
agaagaccctcacttcagatattcttgaaagagtttttttttttaacttg
attttagttctcaatgtcttacttcagaagaaattctcctgaaaaatata
ttttaatcaaacagaattacatcatttcctttctttctttcttttcacta
gcttctcacaagtagcatacccgtaaccactcctgcctctcaagctgaaa
accatttcttattcaattactcttttacatacatgcatgtagatgtgtac
acaaatataaagcacagcttgctgactgcactttttttgttgttgtgtat
atggtttcctaactagaaatcttcactcttttattttcatttttgtttgt
ttttgtttgttgtttgttttttatatttcaaacttctgtggcttttgctt
actgtgtagtaaaatgtctttttccccagtaaatgaatcatcgtcaacag
tcagttccccaggttaaataagtagaacaaagaatcacaagccttgcctc
tgctgagtttggagtcacactcacttgaccattggtcagagcattctaca
aaacgatagtctgagaattcgaattgaatttttttctgtaaaatatcatt
tagggtcaaatttgtagggggttataagtccttctccaagatcattaact
tcacaagatatgagtctttgactaagtttccagtactaggcatgatttcc
ctctgatatacatgcatgcatgcatacatacatacatatgtacatacata
tcgacagtgcatatacatttacacaagcacatgaacacatagagacatat
acataattttaaaaggaagctaagaatttgaaagtaaacagagaaagaat
atataggaggatttggagttaagaaaaaaggagcaagaacatgtaatttt
atctcataaatagaaagagcagtatagtttttgttgtacctcttttaaaa
taataggaaaaggcaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_78386239_78387350
seq2: B6Ng01-234L08.b_41_1155 (reverse)

seq1  GCAAGTTTCTTT-AATGGTGCCAAT--CTTTTTAAGAGTTACAGCTGCTA  47
      |||||||||||| ||||||||||||   |||||||||| |||||||||||
seq2  GCAAGTTTCTTTAAATGGTGCCAATTCTTTTTTAAGAG-TACAGCTGCTA  49

seq1  TTTTAGCTTCATGCTCCTTATCTGAAACT--CTAAGCTTACTCAAACCTC  95
      |||||||||||||||||| ||||||||||   ||||  ||||||||||||
seq2  TTTTAGCTTCATGCTCCTAATCTGAAACTTCTTAAGGCTACTCAAACCTC  99

seq1  TTCCCTACACAATTTATTACATTAATTTTAAATTCTACATCAGTCCAGTT  145
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCCCTACACAATTTATTACATTAATTTTAAATTCTACATCAGTCCAGTT  148

seq1  CTCAGGATATATGCAGAAAAAGCCATATCCTTGGCCAAAATATCTGTCAA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGATATATGCAGAAAAAGCCATATCCTTGGCCAAAATATCTGTCAA  198

seq1  AGTCTCCTTAATGTCTAATGAGATCTGTATTTTCCTCTAAAACCTGATGC  245
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTCTCCTTAATGTCTAATGAGATCTGTATTTTCCTCTAAAACATGATGC  248

seq1  ACCAATCTTTCTTCTTTCCAGTATTTCTTTTCAATTTCATTCAGCCTAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCTTTCTTCTTTCCAGTATTTCTTTTCAATTTCATTCAGCCTAAT  298

seq1  GATTCATCCAGTTTTCCCTTACAACCTCAAGTTTAAATTTTACATTTAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATCCAGTTTTCCCTTACAACCTCAAGTTTAAATTTTACATTTAGA  348

seq1  TATGAGAACTATTTTTATAAGGTCTGATATACAGACCGGGTAGTTGTTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAACTATTTTTATAAGGTCTGATATACAGACCGGGTAGTTGTTAT  398

seq1  AATGATATTGGTCATTATAATACTTATAAACATAAAATTATATGATTATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATTGGTCATTATAATACTTATAAACATAAAATTATATGATTATA  448

seq1  AATATACAATATATAAATATAAAATTATACTTATATATAATTTTATTGTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAATATATAAATATAAAATTATACTTATATATAATTTTATTGTG  498

seq1  AAAATAAAAAATATACTGAAGTCAAGCAACCCAAAGAATATACAAATTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAATATACTGAAGTCAAGCAACCCAAAGAATATACAAATTTT  548

seq1  ATACAAAACTTTAGAACTTCACATTAAATATCTATGTTTACTATTGCTAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAACTTTAGAACTTCACATTAAATATCTATGTTTACTATTGCTAT  598

seq1  TCATTTACCTAAATTTTTTTCCATCACAGTTTCAAAGGTTTACGTTTTAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACCTAAATTTTTTTCCATCACAGTTTCAAAGGTTTACGTTTTAG  648

seq1  AATAGCTATGTGATTTTTTTAAAAATGTCTGAGACTTAGGTCAGAGTTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTATGTGATTTTTTTAAAAATGTCTGAGACTTAGGTCAGAGTTGT  698

seq1  TAAAAAGTTTTTTTTAATTGTTTATTTAAATGTGTAATTGATTATATTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTTTTTTTTAATTGTTTATTTAAATGTGTAATTGATTATATTTG  748

seq1  TTTTTAGAGGTTACATTCTTGCAATTAAGTTCCCTTTTCATCTTTTTAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGAGGTTACATTCTTGCAATTAAGTTCCCTTTTCATCTTTTTAAA  798

seq1  TTGGTCTTTTGCTGCTGTGTGGGTTTTTCTTTCTTCCATTCTTCTCCACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTTTGCTGCTGTGTGGGTTTTTCTTTCTTCCATTCTTCTCCACA  848

seq1  CTTTCAACCTTTTAGAACTAGGTTGGAGAGAAAACTGATAGAGGGGATGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAACCTTTTAGAACTAGGTTGGAGAGAAAACTGATAGAGGGGATGA  898

seq1  GGGAGCATTTATTAGAGTATTTATTGCTGATTAGTTTAGGAGTATCAAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCATTTATTAGAGTATTTATTGCTGATTAGTTTAGGAGTATCAAGT  948

seq1  TCCATGGGGCAAGTTTGATCTTCACTGTCAGGATATCTAATTTTTTCTTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGGGCAAGTTTGATCTTCACTGTCAGGATATCTAATTTTTTCTTG  998

seq1  TTGTTGTTTCTTTGCACATGACTACTTAACAAACCATAACCACCAGCAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTTCTTTGCACATGACTACTTAACAAACCATAACCACCAGCAAC  1048

seq1  CAACAGCAAAAAAACAAAAGCAACTAACCAACAACCAACAAACAACAACC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCAAAAAAACAAAAGCAACTAACCAACAACCAACAAACAACAACC  1098

seq1  ATTGAATTTATGAATTC  1112
      |||||||||||||||||
seq2  ATTGAATTTATGAATTC  1115


seq1: chr4_78253121_78254255
seq2: B6Ng01-234L08.g_62_1181

seq1  GAATTCTCTGCAGCTTCTTTCTCCTTATGCCAAGGAAATCTTAAATATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCAGCTTCTTTCTCCTTATGCCAAGGAAATCTTAAATATAG  50

seq1  AGTTCTCGTTGCAATAATGGTTCCTTTGATGAGACTTTTCTTGGAGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCGTTGCAATAATGGTTCCTTTGATGAGACTTTTCTTGGAGTCCT  100

seq1  TCCTCCTTCAGCCTGGGGACTGTCTGTTCTGTTTGAATATCTTTCTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTCAGCCTGGGGACTGTCTGTTCTGTTTGAATATCTTTCTTTAG  150

seq1  AGAAGACCCTCACTTCAGATATTCTTGAAAGAGTTTTTTTTTTTAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACCCTCACTTCAGATATTCTTGAAAGAGTTTTTTTTTTTAACTTG  200

seq1  ATTTTAGTTCTCAATGTCTTACTTCAGAAGAAATTCTCCTGAAAAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTTCTCAATGTCTTACTTCAGAAGAAATTCTCCTGAAAAATATA  250

seq1  TTTTAATCAAACAGAATTACATCATTTCCTTTCTTTCTTTCTTTTCACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCAAACAGAATTACATCATTTCCTTTCTTTCTTTCTTTTCACTA  300

seq1  GCTTCTCACAAGTAGCATACCCGTAACCACTCCTGCCTCTCAAGCTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCACAAGTAGCATACCCGTAACCACTCCTGCCTCTCAAGCTGAAA  350

seq1  ACCATTTCTTATTCAATTACTCTTTTACATACATGCATGTAGATGTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCTTATTCAATTACTCTTTTACATACATGCATGTAGATGTGTAC  400

seq1  ACAAATATAAAGCACAGCTTGCTGACTGCACTTTTTTTGTTGTTGTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATAAAGCACAGCTTGCTGACTGCACTTTTTTTGTTGTTGTGTAT  450

seq1  ATGGTTTCCTAACTAGAAATCTTCACTCTTTTATTTTCATTTTTGTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCCTAACTAGAAATCTTCACTCTTTTATTTTCATTTTTGTTTGT  500

seq1  TTTTGTTTGTTGTTTGTTTTTTATATTTCAAACTTCTGTGGCTTTTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTGTTTGTTTTTTATATTTCAAACTTCTGTGGCTTTTGCTT  550

seq1  ACTGTGTAGTAAAATGTCTTTTTCCCCAGTAAATGAATCATCGTCAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTAGTAAAATGTCTTTTTCCCCAGTAAATGAATCATCGTCAACAG  600

seq1  TCAGTTCCCCAGGTTAAATAAGTAGAACAAAGAATCACAAGCCTTGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCCCAGGTTAAATAAGTAGAACAAAGAATCACAAGCCTTGCCTC  650

seq1  TGCTGAGTTTGGAGTCACACTCACTTGACCATTGGTCAGAGCATTCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGTTTGGAGTCACACTCACTTGACCATTGGTCAGAGCATTCTACA  700

seq1  AAACGATAGTCTGAGAATTCGAATTGAATTTTTTTCTGTAAAATATCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGATAGTCTGAGAATTCGAATTGAATTTTTTTCTGTAAAATATCATT  750

seq1  TAGGGTCAAATTTGTAGGGGGTTATAAGTCCTTCTCCAAGATCATTAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCAAATTTGTAGGGGGTTATAAGTCCTTCTCCAAGATCATTAACT  800

seq1  TCACAAGATATGAGTCTTTGACTAAGTTTCCAGTACTAGGCATGATTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGATATGAGTCTTTGACTAAGTTTCCAGTACTAGGCATGATTTCC  850

seq1  CTCTGATATACATGCATGCATGCATACATACATACATATGTACATACATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATATACATGCATGCATGCATACATACATACATATGTACATACATA  900

seq1  TCGACAGGTGCATATACATTTACACAAGCACATGAACACATAGAGACATA  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACA-GTGCATATACATTTACACAAGCACATGAACACATAGAGACATA  949

seq1  TAACAATAATTTTAAAAGGAAGCTAAGAATTTGAAAGTAAACAGAGAAAG  1000
      ||   |||||||||||||||||||||||||||||||||||||||||||||
seq2  TA--CATAATTTTAAAAGGAAGCTAAGAATTTGAAAGTAAACAGAGAAAG  997

seq1  -ATATATAGGAGGATTTGGAGTTAAGAAAAAGGAAGCAAGGAACAATGTA  1049
       |||||||||||||||||||||||||||||| | ||||| |||| |||||
seq2  AATATATAGGAGGATTTGGAGTTAAGAAAAAAGGAGCAA-GAAC-ATGTA  1045

seq1  ATTTTAATCTCATAAATAGGAAAAAAGAGAAAATAATAGTTTTTGTTGTA  1099
      ||||| |||||||||||||    ||||||   |  |||||||||||||||
seq2  ATTTT-ATCTCATAAATAG----AAAGAG--CAGTATAGTTTTTGTTGTA  1088

seq1  CCTCTTTTTAAAAATAAAATAAGAAAAGGCAAAATG  1135
      ||||||||  |||||  |||| ||||||||||||||
seq2  CCTCTTTT--AAAAT--AATAGGAAAAGGCAAAATG  1120


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