BAC Information

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BAC

Clone NameB6Ng01-234M20
Chromosome4 (Build37)
Map Location 144,551,135 - 144,552,295
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3
Downstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234M20.bB6Ng01-234M20.g
ACCGA046458GA046459
length1,1651,202
definitionB6Ng01-234M20.b B6Ng01-234M20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaggacatctaaggctacacaggaaaaccctgtttctaaaaacc
aaaaataggaagaaaaagaaagacacaggggttgtggaatatcatcaaaa
tttagagatcatttcagacatgcagcataatggacttactcatttttatt
tttgtataactatgtgtttgtttgagtatatgccacttgtgtttaggtgt
tcacagaggccagaagagggcatcatcaggtccactggggctggagttag
agaaaattgtgagctgtctgatgtgggtgctgagaaccgaactcagatct
tctgtaagaacaagtattcttaactattgagccctccatctctctagccc
aaatgcaacttaattaaaaataaggaaacagttggacagacacttcatgg
aagagtcaaacagggttaatgagatgactcagcagataaaggcacttgct
gctgacccagtgacctgaatttcagcctctgaatccacaggatggaaaga
gagaacataccctgccaagtatcctctgacctacacacagtggtgcatgc
aagtctctcaagtaccctttaacctacacacagtgcacaagcacggctcc
ctaaatgaataggttcaagaaagctgtcaaaagaattacacaaaccgccc
atggtttctgaaagatatctcgtgccactcaaggaaatgcaaatttaaat
tacaaacactattgcaccggtagaatgattaacatgaaaacatccgacaa
taacaagtgttgacaagggtgtggaatacctggcatcctcgtccattgct
ggtggggatgtaaaattaccctagaaaacaacttggcaatgtgtcaaagc
attagacatgtacttaccttgtgacccattagtcctaatccttggcatct
actcaagaggaaggaaaatgtgtccacatggagacacatacacaaatatt
cacccacaatagccgcaactgggaaacaaagcacatgtccatcactgggg
gaaggagtcaacaaaccataggacacatagtattgctgcacttattccca
ccatcaaaattagccgacaccccacacttgcgttggacaaatttcactat
tggttccattcttaactttccaaagtcaacaagtcagttgatgtgccaga
tgtgggaaccggatt
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagcc
ctgcgcagagatacaatgcgcagagaggcagtgcgcagactcattcattc
ccagagaggaacaaaggaaaatacaacaggcatttccggtctttgaagga
gccgagggtgggcgtgtccacgctccggtagaatacttacaaattaaaga
gcttgccgagtcggtccgtaaatatggaaccaatgctaattttaccttgg
tgcagttagacaggctcgccggcatggcactaactcctgccgactggcaa
acggttgtaaaagccgctctccctagtatgggcaaatatatggaatggag
agctctttggcatgaagctgcacaagcgcaggcccgagcaaacgcagctg
ctttgactccagagcagagagattggacttttgacttgttaacgggtcag
ggagcttattctgctgatcagacaaactaccattggggagcttatgccca
gatttcttccacagctattagggcctggaaggcgctctcccgagcaggtg
aaaccactgggcagttaacaaagataatccagggacctcaggaatccttc
tcagattttgtggccagaatgacagaggcagcagagcgtatttttggaga
gtcagagcaagctgcgcctctgatagaacagctcatctatgagcaagcca
caaaggagtgccgagcggccatagctcccagaaagaacaaaggcttacaa
gactggctcaggtctgtcgagagcttgggggaccttctcaccaatgcagg
cttagcggccgccatccttccaatctcagaaccgctccatgagcagaaat
gatcagaggacatgttttaactgcggaagcctgggcattttaggaaagat
tgcagaggctccagataaacgagaggggaacttttggaggagactgtacc
tcgagcacaaggagtgtttctgtgttcttggactcttgacctcaatttta
aatatgatttctcatggccatatactgtgcggcgctggaaagcgactaca
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144551135_144552295
seq2: B6Ng01-234M20.b_47_1211 (reverse)

seq1  AATCCTGTTCCCACATCTTGCACA-CCACTGACTTGGTTGACTTTGGAAA  49
      ||||| |||||||||||| ||||| | |||||||| ||||||||||||||
seq2  AATCCGGTTCCCACATCTGGCACATCAACTGACTT-GTTGACTTTGGAAA  49

seq1  GTT-AGGATGGAAACCATAGTGGAATTGGT-CAACGCAAGTGT-GGGTGT  96
      ||| || |||||| | |||||| |||| || |||||||||||| ||||||
seq2  GTTAAGAATGGAACCAATAGTGAAATTTGTCCAACGCAAGTGTGGGGTGT  99

seq1  CGGGCTTATTTTGATGGT-GGAAT-AGTGCAGCAATACTATGTTGTCCTA  144
      | |||| ||||||||||| ||||| ||||||||||||||||| |||||||
seq2  C-GGCTAATTTTGATGGTGGGAATAAGTGCAGCAATACTATG-TGTCCTA  147

seq1  TGGTTTGTTGACTCCTT-CCCCAGTGATGGACATGTGCTTTGTTTCCAGT  193
      ||||||||||||||||| |||||||||||||||||||||||||||||   
seq2  TGGTTTGTTGACTCCTTCCCCCAGTGATGGACATGTGCTTTGTTTCCCAG  197

seq1  TTGCGGCTATTGTGGGTGAATATTTGTGTATGTGTCTCCATGTGGACACA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGGCTATTGTGGGTGAATATTTGTGTATGTGTCTCCATGTGGACACA  247

seq1  TTTTCCTTCCTCTTGAGTAGATGCCAAGGATTAGGACTAATGGGTCACAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTCCTCTTGAGTAGATGCCAAGGATTAGGACTAATGGGTCACAA  297

seq1  GGTAAGTACATGTCTAATGCTTTGACACATTGCCAAGTTGTTTTCTAGGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTACATGTCTAATGCTTTGACACATTGCCAAGTTGTTTTCTAGGG  347

seq1  TAATTTTACATCCCCACCAGCAATGGACGAGGATGCCAGGTATTCCACAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTACATCCCCACCAGCAATGGACGAGGATGCCAGGTATTCCACAC  397

seq1  CCTTGTCAACACTTGTTATTGTCGGATGTTTTCATGTTAATCATTCTACC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCAACACTTGTTATTGTCGGATGTTTTCATGTTAATCATTCTACC  447

seq1  GGTGCAATAGTGTTTGTAATTTAAATTTGCATTTCCTTGAGTGGCACGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAATAGTGTTTGTAATTTAAATTTGCATTTCCTTGAGTGGCACGAG  497

seq1  ATATCTTTCAGAAACCATGGGCGGTTTGTGTAATTCTTTTGACAGCTTTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTCAGAAACCATGGGCGGTTTGTGTAATTCTTTTGACAGCTTTC  547

seq1  TTGAACCTATTCATTTAGGGAGCCGTGCTTGTGCACTGTGTGTAGGTTAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTATTCATTTAGGGAGCCGTGCTTGTGCACTGTGTGTAGGTTAA  597

seq1  AGGGTACTTGAGAGACTTGCATGCACCACTGTGTGTAGGTCAGAGGATAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACTTGAGAGACTTGCATGCACCACTGTGTGTAGGTCAGAGGATAC  647

seq1  TTGGCAGGGTATGTTCTCTCTTTCCATCCTGTGGATTCAGAGGCTGAAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGGGTATGTTCTCTCTTTCCATCCTGTGGATTCAGAGGCTGAAAT  697

seq1  TCAGGTCACTGGGTCAGCAGCAAGTGCCTTTATCTGCTGAGTCATCTCAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCACTGGGTCAGCAGCAAGTGCCTTTATCTGCTGAGTCATCTCAT  747

seq1  TAACCCTGTTTGACTCTTCCATGAAGTGTCTGTCCAACTGTTTCCTTATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTGTTTGACTCTTCCATGAAGTGTCTGTCCAACTGTTTCCTTATT  797

seq1  TTTAATTAAGTTGCATTTGGGCTAGAGAGATGGAGGGCTCAATAGTTAAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAAGTTGCATTTGGGCTAGAGAGATGGAGGGCTCAATAGTTAAG  847

seq1  AATACTTGTTCTTACAGAAGATCTGAGTTCGGTTCTCAGCACCCACATCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTGTTCTTACAGAAGATCTGAGTTCGGTTCTCAGCACCCACATCA  897

seq1  GACAGCTCACAATTTTCTCTAACTCCAGCCCCAGTGGACCTGATGATGCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTCACAATTTTCTCTAACTCCAGCCCCAGTGGACCTGATGATGCC  947

seq1  CTCTTCTGGCCTCTGTGAACACCTAAACACAAGTGGCATATACTCAAACA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGGCCTCTGTGAACACCTAAACACAAGTGGCATATACTCAAACA  997

seq1  AACACATAGTTATACAAAAATAAAAATGAGTAAGTCCATTATGCTGCATG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATAGTTATACAAAAATAAAAATGAGTAAGTCCATTATGCTGCATG  1047

seq1  TCTGAAATGATCTCTAAATTTTGATGATATTCCACAACCCCTGTGTCTTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATGATCTCTAAATTTTGATGATATTCCACAACCCCTGTGTCTTT  1097

seq1  CTTTTTCTTCCTATTTTTGGTTTTTAGAAACAGGGTTTTCCTGTGTAGCC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTCCTATTTTTGGTTTTTAGAAACAGGGTTTTCCTGTGTAGCC  1147

seq1  TTAGATGTCCTAGAATTC  1161
      ||||||||||||||||||
seq2  TTAGATGTCCTAGAATTC  1165