BAC Information

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BAC

Clone NameB6Ng01-235F16
Chromosome4 (Build37)
Map Location 26,141,087 - 26,261,960
singlet/doubletdoublet
Overlap geneManea
Upstream geneFhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
Downstream geneBhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235F16.bB6Ng01-235F16.g
ACCGA046850GA046851
length1,2131,114
definitionB6Ng01-235F16.b B6Ng01-235F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,141,087 - 26,142,308)(26,260,854 - 26,261,960)
sequence
gaattctttttagacctgacaaatactaattggaggaaaggatcacaaaa
aatgtgcagggtatgcttgaagaaaagccagttgttccttttgaaacaaa
ataggtccagtaatcaagtttggggagaccatgatcctctgagctcaatg
caaaatggaggacaccctttaccagcagggcttccctttctttgaccttg
tctggggagcccaatccttgttactatatacctgagataaggcaattagc
tcctggctaaccccccccccccccgccgcgaagcacacccctgattaccc
cacaaccacaccccataagcagctgccaagctagtacctaggattccttg
aatgcttcttaatacaaatgagtcattcaaagcactttaaacactagcca
atgattttcattcatattgaaaattcctttccactctccaaggtcaataa
ataaccctggagcatcccaaatgaagagtatgtgcaaaagctaggattat
ctaagagaattgtttcactgaagattgaagatcagaagaggccttagtct
aaaagagctgtaacacttaaattctcagagaaggcccctactcctctcac
tccccacttcctcccccaacgccatcctctcacctccacaccaccaaccc
cttcattctcacctccacacacccaaccgtacactcccacatcccacacc
cctgtttataattattaaatcaatgtaagctcagataacaaaaatgtatt
tctttcaaaatagaggaaaataaacattcaaataatacaaccaaatgaat
agtttgctaatggtatgctttgttttgtttaagtataaaaagaagtttat
ttaggacatggatgaaggagtagaggcagaggaggtaggggacagagaag
gacagaaagagaaagaatggaaggaagagaaaagacaggagaggacagca
tggaagagagagaggaaagatggaaggagaaagtaggagacccccactcc
cgagagagagacgaccgaccgacgacgaccctagacccatgaccctaaga
cccaaggacccgaacccgagaagtgttgagaagccacaagcagctatgta
tgtttagtgttccatgatcgtacttgatcatattgccatttatttaaaga
agagaagaatcctccttccacgtaacagctgttagcctgccatatgccta
ggaaattagggcc
gaattcatgtaaaatagtaagtagcagggaggaagtaggaaatttgttag
ggaaaacagaccctaaagattactgacattagaaaattgcaattcaaatt
agaggaagtggtagggaaagagaagaaaataaaatgaagtgtaaatgaga
gagaaagtatgtgggttgtaggttagagaaatatatgaggagacaataga
aataggcgttaaatcaaataaataagagcaaatatctatataagggtgaa
agttttttaaaaattaaataaaaaaaaacctctaattaaaatttcttcct
tgattagaaaacatcaaggaatgccctcttctgcccaagaagtcttgtgc
atttgaatttgctggtaggagagctgtttacctttgtgtgcagttcaaac
ctgattacgcaggggttacccaatgaaaccctgaataatggctgtaccag
cccattcctgtctctctttgcaaataaaacttttagtcctactgagggtc
agcctgcctgtgccagtgctcttaatctgacattccttgtttcagagttt
tagttcaaaggaactcccatgaggggttctgggattctctgggtctcctc
tcttggggttggattttggagacatgagtatgtagttttctatacttccc
agcaacgtatttgcttgcagtttccccttgtaccaacaaaatatgtggta
ttttaggttagaggcagtgggtaacttcccagtatctgcttcacagtttg
ttggtctaccttttttgtttctcctttctttctttttatttttctagaag
tttactttttctgtcatttatagatccaaaactaggggtcaaggaaggat
tttttatttttaccctttttatcatttaactccagcatagatttctgtag
cccttaagaaagccttgagatagtatcctcttcaatgaactgtcattttg
gcgcctgcagaatagtcaagtcatcaagttcctgggaactacacctgagg
ttgaattaagtcgttgatttatttcatgcagagtaatccaggcccctgat
ctgtccagtctgtgcccagttctggtggggagaagtaataaaactggaca
ttttagcttaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_26141087_26142308
seq2: B6Ng01-235F16.b_48_1260

seq1  GAATTCTTTTTAGACCTGACAAATACTAATTGGAGGAAAGGATCACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAGACCTGACAAATACTAATTGGAGGAAAGGATCACAAAA  50

seq1  AATGTGCAGGGTATGCTTGAAGAAAAGCCAGTTGTTCCTTTTGAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCAGGGTATGCTTGAAGAAAAGCCAGTTGTTCCTTTTGAAACAAA  100

seq1  ATAGGTCCAGTAATCAAGTTTGGGGAGACCATGATCCTCTGAGCTCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCCAGTAATCAAGTTTGGGGAGACCATGATCCTCTGAGCTCAATG  150

seq1  CAAAATGGAGGACACCCTTTACCAGCAGGGCTTCCCTTTCTTTGACCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGAGGACACCCTTTACCAGCAGGGCTTCCCTTTCTTTGACCTTG  200

seq1  TCTGGGGAGCCCAATCCTTGTTACTATATACCTGAGATAAGGCAATTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGAGCCCAATCCTTGTTACTATATACCTGAGATAAGGCAATTAGC  250

seq1  TCCTGGCTAA-CCCCCCCCCCCCCGCCGCGAAGCACACCCCTGATTACCC  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTAACCCCCCCCCCCCCCGCCGCGAAGCACACCCCTGATTACCC  300

seq1  CACAACCACACCCCATAAGCAGCTGCCAAGCTAGTACCTAGGATTCCTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCACACCCCATAAGCAGCTGCCAAGCTAGTACCTAGGATTCCTTG  350

seq1  AATGCTTCTTAATACAAATGAGTCATTCAAAGCACTTTAAACACTAGCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCTTAATACAAATGAGTCATTCAAAGCACTTTAAACACTAGCCA  400

seq1  ATGATTTTCATTCATATTGAAAATTCCTTTCCACTCTCCAAGGTCAATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTCATTCATATTGAAAATTCCTTTCCACTCTCCAAGGTCAATAA  450

seq1  ATAACCCTGGAGCATCCCAAATGAAGAGTATGTGCAAAAGCTAGGATTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCTGGAGCATCCCAAATGAAGAGTATGTGCAAAAGCTAGGATTAT  500

seq1  CTAAGAGAATTGTTTCACTGAAGATTGAAGATCAGAAGAGGCCTTAGTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGAATTGTTTCACTGAAGATTGAAGATCAGAAGAGGCCTTAGTCT  550

seq1  AAAAGAGCTGTAACACTTAAATTCTCAGAGAAGGCCCCTACTCCTCTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCTGTAACACTTAAATTCTCAGAGAAGGCCCCTACTCCTCTCAC  600

seq1  TCCCCACTTCCTCCCCCAACGCCATCCTCTCACCTCCACACCACCAACCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACTTCCTCCCCCAACGCCATCCTCTCACCTCCACACCACCAACCC  650

seq1  CTTCATTCTCACCTCCACACACCCAACCGTACACTCCCACATCCCACACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCTCACCTCCACACACCCAACCGTACACTCCCACATCCCACACC  700

seq1  CCTGTTTATAATTATTAAATCAATGTAAGCTCAGATAACAAAAATGTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTATAATTATTAAATCAATGTAAGCTCAGATAACAAAAATGTATT  750

seq1  TCTTTCAAAATAGAGGAAAATAAACATTCAAATAATACAACCAAATGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAAAATAGAGGAAAATAAACATTCAAATAATACAACCAAATGAAT  800

seq1  AGTTTGCTAATGGTATGCTTTGTTTTGTTTAAGTATAAAAAGAAGTTTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTAATGGTATGCTTTGTTTTGTTTAAGTATAAAAAGAAGTTTAT  850

seq1  TTAGGACATGGATGAAGGAGTAGAGGCAGAGGAGGTAGGGGACAGAGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACATGGATGAAGGAGTAGAGGCAGAGGAGGTAGGGGACAGAGAAG  900

seq1  GACAGAAAGAGAAAGAA-GGAAGGAAGAGAAAAAGACAGGAAGAGGACAG  948
      ||||||||||||||||| ||||||||||| |||||||||| |||||||||
seq2  GACAGAAAGAGAAAGAATGGAAGGAAGAG-AAAAGACAGG-AGAGGACAG  948

seq1  CAGGGGAAGAGAGAGAGGAAAGATGGAAGGAGAAAGTAAGGAGACACACA  998
      ||  ||||||||||||||||||||||||||||||||| ||||||| | ||
seq2  CA-TGGAAGAGAGAGAGGAAAGATGGAAGGAGAAAGT-AGGAGACCCCCA  996

seq1  CATACACAGAGAGAGAGACAGACAGACAGACAGACAGACACAAAGACACA  1048
      |     | ||||||||||| ||| ||| ||| ||| ||| |  |||| | 
seq2  C---TCCCGAGAGAGAGAC-GACCGACCGAC-GAC-GAC-CCTAGAC-CC  1038

seq1  AAGACACAAAGACACAAAGACACAGAAACACAGAGAAAGTG-TGAGA--G  1095
      | ||| | ||||| ||| ||| | ||| |  ||   ||||| |||||   
seq2  ATGACCCTAAGACCCAAGGAC-CCGAACCCGAG---AAGTGTTGAGAAGC  1084

seq1  CACAAGCAAGCTAATGGTATGTTTAAGTGTTTCCATGATCGTAACATGAT  1145
      ||||||| |||||   |||||||| |||| |||||||||||| || ||||
seq2  CACAAGC-AGCTA--TGTATGTTT-AGTG-TTCCATGATCGT-ACTTGAT  1128

seq1  CATATGGCCATGTTATTAAAGAAGAGA--GATCCTCC-TCCAC-TAACAG  1191
      ||||| ||||| |  ||||||||||||   ||||||| ||||| ||||||
seq2  CATATTGCCATTTATTTAAAGAAGAGAAGAATCCTCCTTCCACGTAACAG  1178

seq1  CTGTTAG-CTGCCA-ATAGCTAG--AATTAGGGCC  1222
      ||||||| |||||| ||  ||||  ||||||||||
seq2  CTGTTAGCCTGCCATATGCCTAGGAAATTAGGGCC  1213

seq1: chr4_26260854_26261960
seq2: B6Ng01-235F16.g_66_1179 (reverse)

seq1  TCATTAAAGCTAAAATGTCCAATTTTATTACCTCTCCCCA-CAGAATTGG  49
      ||||| ||||||||||||||| ||||||||| |||||||| ||||| | |
seq2  TCATT-AAGCTAAAATGTCCAGTTTTATTACTTCTCCCCACCAGAACT-G  48

seq1  GGCACAGACTGGACAGATCAGGGGCCCTGGATTTACTCTGCATGAAATAA  99
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  GGCACAGACTGGACAGATCAGGGG-CCTGGA-TTACTCTGCATGAAATAA  96

seq1  ATCAACGACTT-ATTCAACCTCAGTTGTAGTTCC--AGAACTTGATGACT  146
      ||||||||||| |||||||||||| |||||||||   |||||||||||||
seq2  ATCAACGACTTAATTCAACCTCAGGTGTAGTTCCCAGGAACTTGATGACT  146

seq1  TGACTA-TCTGCAGGCGCC-AAATGACAGTTCATTG-AGA-GATACTATC  192
      |||||| |||||||||||| |||||||||||||||| ||| |||||||||
seq2  TGACTATTCTGCAGGCGCCAAAATGACAGTTCATTGAAGAGGATACTATC  196

seq1  TCAAGGCTTTCTTTAGGGCTACAGAAATCTATGCTGGAGTTTAAATGATA  242
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  TCAAGGCTTTCTTAAGGGCTACAGAAATCTATGCTGGAG-TTAAATGATA  245

seq1  AAAA-GGTAAAAATAAAAAATCCTTCCTTGA-CCCTAG-TTTGGATCTAT  289
      |||| |||||||||||||||||||||||||| |||||| |||||||||||
seq2  AAAAGGGTAAAAATAAAAAATCCTTCCTTGACCCCTAGTTTTGGATCTAT  295

seq1  AAATGACAG-AAAAGTAAACTTCTAGAAAAATAAAAAGAAAGAAAGGAGA  338
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAGAAAAAGTAAACTTCTAGAAAAATAAAAAGAAAGAAAGGAGA  345

seq1  AACAAAAAAGGTAGACCAACAAACTGTGAAGCAGATACTGGGAAGTTACC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAGGTAGACCAACAAACTGTGAAGCAGATACTGGGAAGTTACC  395

seq1  CACTGCCTCTAACCTAAAATACCACATATTTTGTTGGTACAAGGGGAAAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTCTAACCTAAAATACCACATATTTTGTTGGTACAAGGGGAAAC  445

seq1  TGCAAGCAAATACGTTGCTGGGAAGTATAGAAAACTACATACTCATGTCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCAAATACGTTGCTGGGAAGTATAGAAAACTACATACTCATGTCT  495

seq1  CCAAAATCCAACCCCAAGAGAGGAGACCCAGAGAATCCCAGAACCCCTCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATCCAACCCCAAGAGAGGAGACCCAGAGAATCCCAGAACCCCTCA  545

seq1  TGGGAGTTCCTTTGAACTAAAACTCTGAAACAAGGAATGTCAGATTAAGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTCCTTTGAACTAAAACTCTGAAACAAGGAATGTCAGATTAAGA  595

seq1  GCACTGGCACAGGCAGGCTGACCCTCAGTAGGACTAAAAGTTTTATTTGC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGCACAGGCAGGCTGACCCTCAGTAGGACTAAAAGTTTTATTTGC  645

seq1  AAAGAGAGACAGGAATGGGCTGGTACAGCCATTATTCAGGGTTTCATTGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGACAGGAATGGGCTGGTACAGCCATTATTCAGGGTTTCATTGG  695

seq1  GTAACCCCTGCGTAATCAGGTTTGAACTGCACACAAAGGTAAACAGCTCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCCTGCGTAATCAGGTTTGAACTGCACACAAAGGTAAACAGCTCT  745

seq1  CCTACCAGCAAATTCAAATGCACAAGACTTCTTGGGCAGAAGAGGGCTTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTACCAGCAAATTCAAATGCACAAGACTTCTTGGGCAGAAGAGGGCATT  795

seq1  CCTTGATGTTTTCTAATCAAGGAAGAAATTTTAATTAGAGGTTTTTTTTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATGTTTTCTAATCAAGGAAGAAATTTTAATTAGAGGTTTTTTTTT  845

seq1  ATTTAATTTTTAAAAAACTTTCACCCTTATATAGATATTTGCTCTTATTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTTTAAAAAACTTTCACCCTTATATAGATATTTGCTCTTATTT  895

seq1  ATTTGATTTAACGCCTATTTCTATTGTCTCCTCATATATTTCTCTAACCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTAACGCCTATTTCTATTGTCTCCTCATATATTTCTCTAACCT  945

seq1  ACAACCCACATACTTTCTCTCTCATTTACACTTCATTTTATTTTCTTCTC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCACATACTTTCTCTCTCATTTACACTTCATTTTATTTTCTTCTC  995

seq1  TTTCCCTACCACTTCCTCTAATTTGAATTGCAATTTTCTAATGTCAGTAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTACCACTTCCTCTAATTTGAATTGCAATTTTCTAATGTCAGTAA  1045

seq1  TCTTTAGGGTCTGTTTTCCCTAACAAATTTCCTACTTCCTCCCTGCTACT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGGTCTGTTTTCCCTAACAAATTTCCTACTTCCTCCCTGCTACT  1095

seq1  TACTATTTTACATGAATTC  1107
      |||||||||||||||||||
seq2  TACTATTTTACATGAATTC  1114