BAC Information

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BAC

Clone NameB6Ng01-235J23
Chromosome4 (Build37)
Map Location 148,530,311 - 148,674,035
singlet/doubletdoublet
Overlap genePgd, Kif1b
Upstream geneFbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774
Downstream geneLOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235J23.bB6Ng01-235J23.g
ACCGA047051GA047052
length1,1121,091
definitionB6Ng01-235J23.b B6Ng01-235J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,672,934 - 148,674,035)(148,530,311 - 148,531,403)
sequence
gaattcccatcttcctgcctctgcctcccaagtgctatgattacaggtgt
gtgcctctttacatgccttttctgtttgctttgttctttaaattacagat
cattccttgagaatacagtttagtcacaggcatggcagtacatacgtgct
tttaatcccagcattcaggaggcagagggatctctgggagttaaaggcca
gcctggttatgtcaattccaggacagtcagagcaacatagtgagactctc
tctctctctctctctctgtctctctctctgtctctctctctgtctatgta
tatatatatataaaattttaaattccttgatgtcaaactgttgttctaga
aagttgagctagtaatagtttctttttggaataaaaattagtataaaaac
tagattaaggtagctagctactgaaacaaacatctgcccagtcccaaact
ttatgcatctcagtgaatttctcaaattttgttttagatctatttatttt
tttattttattttatttttttggtttttttcgagacagggtttctctgta
tagatgtatttattttattattttatgtgtacaaatgtgtaccgtgtggt
gcttgttacccatggaaatcagaagggccgtggggtcttctgaaccacag
ttacagacgatgtgagctctgcgtgtggagagtcaagcctgggtcctctg
ccagggcacgtgctcttaacactgtgctgtcgtctctccagcctttttca
gtggccttctcttcactagtgactttaatagactatttcttggttaaaaa
cgtctgtagctttaattttctttttcaatgtgtatgactgtttgtcttca
cgtgtgggtacctatgaaggccagaggagggcattggagtccccctggga
ctggagttacatgataatgagccaccatgtggggttgctggggagttgaa
ctcagttcctctgggaggagcaatccagtgcttcttatcaactggagccg
gtctctgcagtccctaattctgtgttcaggaataataatctttacatgcc
tttctataaacgaatatgacaaaattaatttaacctcgaacaatcaaacg
agcttggtgtag
gaattcatgttgactactacataagcaaaatgtgtttgtgaacttttctt
actgaacccatttttgtttttgattttgtttttgtttgtttgtttttcga
gacagggtttctctgtatagcccaggctgtcctggaactcactttgtaga
ccaggctggcctcagaaatccaactgcctctgcctcccgagtacttggat
taaaggtgtgcgtcaccatgcccggcttactgaacccattatcaaagaaa
tcttataaaaacaaccaacagccaacaaggcaggcaggcctacattccgg
tactcaggaggctgagactgatgtacgttcaatgctaacctgagctactc
atcaagactgtctcaagaaccaactacacaaagaaggggaaagctgccat
attaccaatgagggtgacgggcatgccgtactccagcgccgagatggcgg
tccacttcccagtgcccttctgcccagcactgtcccggatctttggcaac
agctctttgccgtcagtgtcccggtacttgagaatgttagcagtgatttc
aatcaggaatgagtccagctctgtcttgttccattcttcaaatgcctaca
cacagaggagaaagcccagtgagagggttctgtgggcaccctggctcatc
tgccatattcttgcttctgtctgtagctggtgccctcactgcagagcaca
tagggacagcaaaccctcctcctagtggcctgaagactcctattcctgcc
cagtgagttgagtttcccaggtcaggaagttctgttgagtatctgcctgg
ctaatttctcagcactgagactgtcccctctccttggagtcaagcccctc
atgtcatctgggcctaggcacaatatcaccttcttgtcgtacctacaccc
cacctcctgggactggacatacatagctcagtggtggacagtgaggttct
tttttttttcttctttctcctattggattgaaaacagggtttcctctgtg
tagcctggctaccctggaactcattctgtagacagctagccctggactca
gagaatctgctcccttaggaagcatcaaggtggtgcagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_148672934_148674035
seq2: B6Ng01-235J23.b_46_1157 (reverse)

seq1  CTACACCAAGCTGTTTTGATTTGTTTGAGGTTAATTTATTTTTGTCATAT  50
      ||||||||||||  ||||| ||||| |||||||| ||| |||||||||||
seq2  CTACACCAAGCTCGTTTGA-TTGTTCGAGGTTAAATTAATTTTGTCATAT  49

seq1  CCGTTTATAGAAA-GCATGT-AAGATTA-TATTCCTAAAACACAG-ATTA  96
       |||||||||||| |||||| ||||||| |||||||  ||||||| ||||
seq2  TCGTTTATAGAAAGGCATGTAAAGATTATTATTCCT-GAACACAGAATTA  98

seq1  GGGACTGCAGAGA-CGGCT-CAGTGGTTAAG-AGCACTGG-TTGCT-CTT  141
      ||||||||||||| ||||| |||| | |||| |||||||| ||||| || 
seq2  GGGACTGCAGAGACCGGCTCCAGTTGATAAGAAGCACTGGATTGCTCCTC  148

seq1  CCAGAGGACCTGAGTTC-ACTCCCCAGCA--CCCACATGGTGGCTCATTA  188
      |||||||| |||||||| |||||||||||  |||||||||||||||||||
seq2  CCAGAGGAACTGAGTTCAACTCCCCAGCAACCCCACATGGTGGCTCATTA  198

seq1  TCATGTAACTCCAGTCCCAGGGGGACTCCAATGCCCTCCTCTGGCCTTCA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAACTCCAGTCCCAGGGGGACTCCAATGCCCTCCTCTGGCCTTCA  248

seq1  TAGGTACCCACACGTGAAGACAAACAGTCATACACATTGAAAAAGAAAAT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACCCACACGTGAAGACAAACAGTCATACACATTGAAAAAGAAAAT  298

seq1  TAAAGCTACAGACGTTTTTAACCAAGAAATAGTCTATTAAAGTCACTAGT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTACAGACGTTTTTAACCAAGAAATAGTCTATTAAAGTCACTAGT  348

seq1  GAAGAGAAGGCCACTGAAAAAGGCTGGAGAGACGACAGCACAGTGTTAAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAGGCCACTGAAAAAGGCTGGAGAGACGACAGCACAGTGTTAAG  398

seq1  AGCACGTGCCCTGGCAGAGGACCCAGGCTTGACTCTCCACACGCAGAGCT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTGCCCTGGCAGAGGACCCAGGCTTGACTCTCCACACGCAGAGCT  448

seq1  CACATCGTCTGTAACTGTGGTTCAGAAGACCCCACGGCCCTTCTGATTTC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCGTCTGTAACTGTGGTTCAGAAGACCCCACGGCCCTTCTGATTTC  498

seq1  CATGGGTAACAAGCACCACACGGTACACATTTGTACACATAAAATAATAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTAACAAGCACCACACGGTACACATTTGTACACATAAAATAATAA  548

seq1  AATAAATACATCTATACAGAGAAACCCTGTCTCGAAAAAAACCAAAAAAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATACATCTATACAGAGAAACCCTGTCTCGAAAAAAACCAAAAAAA  598

seq1  TAAAATAAAATAAAAAAATAAATAGATCTAAAACAAAATTTGAGAAATTC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAATAAAAAAATAAATAGATCTAAAACAAAATTTGAGAAATTC  648

seq1  ACTGAGATGCATAAAGTTTGGGACTGGGCAGATGTTTGTTTCAGTAGCTA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATGCATAAAGTTTGGGACTGGGCAGATGTTTGTTTCAGTAGCTA  698

seq1  GCTACCTTAATCTAGTTTTTATACTAATTTTTATTCCAAAAAGAAACTAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTTAATCTAGTTTTTATACTAATTTTTATTCCAAAAAGAAACTAT  748

seq1  TACTAGCTCAACTTTCTAGAACAACAGTTTGACATCAAGGAATTTAAAAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCTCAACTTTCTAGAACAACAGTTTGACATCAAGGAATTTAAAAT  798

seq1  TTTATATATATATATACATAGACAGAGAGAGAGACAGAGAGAGAGACAGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATATATATACATAGACAGAGAGAGAGACAGAGAGAGAGACAGA  848

seq1  GAGAGAGAGAGAGAGAGAGTCTCACTATGTTGCTCTGACTGTCCTGGAAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGTCTCACTATGTTGCTCTGACTGTCCTGGAAT  898

seq1  TGACATAACCAGGCTGGCCTTTAACTCCCAGAGATCCCTCTGCCTCCTGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAACCAGGCTGGCCTTTAACTCCCAGAGATCCCTCTGCCTCCTGA  948

seq1  ATGCTGGGATTAAAAGCACGTATGTACTGCCATGCCTGTGACTAAACTGT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGATTAAAAGCACGTATGTACTGCCATGCCTGTGACTAAACTGT  998

seq1  ATTCTCAAGGAATGATCTGTAATTTAAAGAACAAAGCAAACAGAAAAGGC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAGGAATGATCTGTAATTTAAAGAACAAAGCAAACAGAAAAGGC  1048

seq1  ATGTAAAGAGGCACACACCTGTAATCATAGCACTTGGGAGGCAGAGGCAG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGAGGCACACACCTGTAATCATAGCACTTGGGAGGCAGAGGCAG  1098

seq1  GAAGATGGGAATTC  1102
      ||||||||||||||
seq2  GAAGATGGGAATTC  1112

seq1: chr4_148530311_148531403
seq2: B6Ng01-235J23.g_65_1155

seq1  GAATTCATGTTGACTACTACATAAGCAAAATGTGTTTGTGAACTTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTGACTACTACATAAGCAAAATGTGTTTGTGAACTTTTCTT  50

seq1  ACTGAACCCATTTTTGTTTTTGATTTTGTTTTTGTTTGTTTGTTTTTCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCCATTTTTGTTTTTGATTTTGTTTTTGTTTGTTTGTTTTTCGA  100

seq1  GACAGGGTTTCTCTGTATAGCCCAGGCTGTCCTGGAACTCACTTTGTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTATAGCCCAGGCTGTCCTGGAACTCACTTTGTAGA  150

seq1  CCAGGCTGGCCTCAGAAATCCAACTGCCTCTGCCTCCCGAGTACTTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTCAGAAATCCAACTGCCTCTGCCTCCCGAGTACTTGGAT  200

seq1  TAAAGGTGTGCGTCACCATGCCCGGCTTACTGAACCCATTATCAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGTGCGTCACCATGCCCGGCTTACTGAACCCATTATCAAAGAAA  250

seq1  TCTTATAAAAACAACCAACAGCCAACAAGGCAGGCAGGCCTACATTCCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAAAAACAACCAACAGCCAACAAGGCAGGCAGGCCTACATTCCGG  300

seq1  TACTCAGGAGGCTGAGACTGATGTACGTTCAATGCTAACCTGAGCTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGGAGGCTGAGACTGATGTACGTTCAATGCTAACCTGAGCTACTC  350

seq1  ATCAAGACTGTCTCAAGAACCAACTACACAAAGAAGGGGAAAGCTGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGACTGTCTCAAGAACCAACTACACAAAGAAGGGGAAAGCTGCCAT  400

seq1  ATTACCAATGAGGGTGACGGGCATGCCGTACTCCAGCGCCGAGATGGCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAATGAGGGTGACGGGCATGCCGTACTCCAGCGCCGAGATGGCGG  450

seq1  TCCACTTCCCAGTGCCCTTCTGCCCAGCACTGTCCCGGATCTTTGGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCCCAGTGCCCTTCTGCCCAGCACTGTCCCGGATCTTTGGCAAC  500

seq1  AGCTCTTTGCCGTCAGTGTCCCGGTACTTGAGAATGTTAGCAGTGATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTGCCGTCAGTGTCCCGGTACTTGAGAATGTTAGCAGTGATTTC  550

seq1  AATCAGGAATGAGTCCAGCTCTGTCTTGTTCCATTCTTCAAATGCCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGAATGAGTCCAGCTCTGTCTTGTTCCATTCTTCAAATGCCTACA  600

seq1  CACAGAGGAGAAAGCCCAGTGAGAGGGTTCTGTGGGCACCCTGGCTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGAGAAAGCCCAGTGAGAGGGTTCTGTGGGCACCCTGGCTCATC  650

seq1  TGCCATATTCTTGCTTCTGTCTGTAGCTGGTGCCCTCACTGCAGAGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATATTCTTGCTTCTGTCTGTAGCTGGTGCCCTCACTGCAGAGCACA  700

seq1  TAGGGACAGCAAACCCTCCTCCTAGTGGCCTGAAGACTCCTATTCCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACAGCAAACCCTCCTCCTAGTGGCCTGAAGACTCCTATTCCTGCC  750

seq1  CAGTGAGTTGAGTTTCCCAGGTCAGGAAGTTCTGTTGAGTATCTGCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTTGAGTTTCCCAGGTCAGGAAGTTCTGTTGAGTATCTGCCTGG  800

seq1  CTAATTTCTCAGCACTGAGACTGTCCCCTCTCCTTGGAGTCAAGCCCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCTCAGCACTGAGACTGTCCCCTCTCCTTGGAGTCAAGCCCCTC  850

seq1  ATGTCATCTGGGCCTAGGCACAATATCACCTTCTTGTCGTACCTACACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATCTGGGCCTAGGCACAATATCACCTTCTTGTCGTACCTACACCC  900

seq1  CACCTCCTGGGACTGGACATACATAGCTCAGTGGTGGACAGTGAGGTTC-  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACCTCCTGGGACTGGACATACATAGCTCAGTGGTGGACAGTGAGGTTCT  950

seq1  TTTTTTTTTCTTCTTTTCTTCCTATTGGATTTGAAAACAGGG-TTCCTCT  998
      ||||||||||||||||   |||||||||| |||||||||||| |||||||
seq2  TTTTTTTTTCTTCTTT--CTCCTATTGGA-TTGAAAACAGGGTTTCCTCT  997

seq1  GTGTAGCCCTGGCTACCCTGGAACTCATTCTGTAGACCAGGCTAGCCTGG  1048
      |||||| ||||||||||||||||||||||||||||||   |||||||  |
seq2  GTGTAG-CCTGGCTACCCTGGAACTCATTCTGTAGAC--AGCTAGCCCTG  1044

seq1  AACTCAGAG-ATCTGCCTCCCTAGGAGGCATCAAGGT-GTGCAGCAC  1093
       |||||||| ||||||  || ||||| |||||||||| |||||||||
seq2  GACTCAGAGAATCTGCTCCCTTAGGAAGCATCAAGGTGGTGCAGCAC  1091