BAC Information

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BAC

Clone NameB6Ng01-236C08
Chromosome4 (Build37)
Map Location 118,626,755 - 118,691,191
singlet/doubletdoublet
Overlap geneLao1, LOC666703
Upstream geneSt3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519
Downstream geneOTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236C08.bB6Ng01-236C08.g
ACCGA047436GA047437
length1,1331,156
definitionB6Ng01-236C08.b B6Ng01-236C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,690,070 - 118,691,191)(118,626,755 - 118,627,927)
sequence
gaattctgtggacttctttgttctatttcttcactcctagtttacttaaa
aaaaaaattcctttgagacagggtcatgcgtcataagctagactaacctg
gtacctgctatgtcctctgggcgagttctctctgtctttctcctgtcttc
ccttctttgtccactccctcatttatttctccagaggatgaggaagtctc
gggggctgccatggggctaggaatggggctcaggttccagttggggcccc
ctagaatcattctgtgcatgcacagtttgacaggatggcacatgccatgc
agaattctcagcaacaatgcgggccagatgcaaggaagccaagatgaaga
gaaaagagcgactgtgtcagcccttgatgccctcctctggaaaagaggtc
cgagcaggttggggtgtctttgtgtttgtttaggttttatgtgcacagag
ttgggtcacacgttcttccttcagaatcatttccttcttagcttccttca
tctcattcccatcccttgctccttttctcactctaccatgttactaaata
tgtccttagagagtgcatgtctgagtccagcattgtggaacacgcctgta
atttcaggacttggaaggtggaggcaaggttttccttggctagtgagtta
taggccagcctgggctaaaactcaagtcttcatgacaccctgtattaaaa
acaaaacaaaacaaaaccaaccaactaaacaacaacaacaacgatgatga
tgatgacgacgacgacgatgacgacgatgacgacgatgtcgacgacaacg
acaacgacagggactggagagattaagaattaacattggctgctcttcca
aagcacccaggttcaatttccaacacccacatgacagcccacaaccatct
gtaactttaaggcctagggtatctgacaccctcctctgggcctccgtatg
caatgcacatatgtggtacataggtacacatttcaggcaacattcgtaca
cataaaattaaaaattaaactaaaaaaactcacaaacaaaacatatagac
attttattttttgtctgataaatcttgcatggggggttgggggtgggttc
tttgaaaacactagtatctatgtcaatgccagc
gaattcccagacaactgggagaggatgatgtacaatcagagtacaactac
tctgctttgcagcaacgggtgattggtccaggccagttattgcttaataa
cctcagctcaaccaacatcaattaattgaaggaaagatttttttattgtg
cctgtcagatgaaaaactaagatacaataaaagtaagcgtcatgttcaag
attacagctagaagtgggagtttatgtggcacagtctcagagcctggctc
tcaggcactgccttgctctgctctggtacacaggctctcaagcaggaggg
gagggatgcaaaggcttcacactgtgtctccttgagctcatagagattgc
tgagtttcctccccaggcattgtggagccatggcctctgcagaagcaagc
acaagactggaccaaaccttcctaagtgagagggggaatggcaggttcaa
agctcgtctcatcgtaagatgtcctccatctagtctccacctgaatgtgc
caggccacggagctgggttgaaaagaccgggaaagatctatggaaattaa
gttagaaaattatgagcagtttggtgacatactggaattctcagtaagta
attatttgaggacggaagaaggaaagaaggagagagggttgactgacctt
gtgtccagctggaaaagaagagcaggcgatgagggaaaagactacaggag
tgtgaggatgtatacagggggaaaaaattacataatgtcctggttacgtc
tgagcacaagcctcacagacacctggagcttgccaacaacctaaagatga
gaagccacctcgtacctagtgggtccacaggactgttactgccggctctt
agcaggaaaggatcaggaagcccataggcagctgagtgcagagagttagc
atttccaggaagctccttccccagaacaaccccaaagtttcttgagagtt
tgggaactgagccctcttgacttcctccatggaacagccagcactgcccc
tgaaggcattgccaaggattctggctgcagacgaaaggagactcaggcat
ctcatcttctcagcaggacagctgctaagtttacaccccctgcctctgcc
caccctacaatgcctggccgtgtcagacgagtctcagtgtcacaagaaca
ctaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118690070_118691191
seq2: B6Ng01-236C08.b_43_1175 (reverse)

seq1  GCTGGCA-TGACAT-GATACTAGT-TTTTCAAAGA--CCACCCCCA--CC  43
      ||||||| |||||| ||||||||| ||||||||||  |||||||||  ||
seq2  GCTGGCATTGACATAGATACTAGTGTTTTCAAAGAACCCACCCCCAACCC  50

seq1  CCCATGCAGATTTTATCAGGACAAAATAT---ATGTCTATATGTTTTGTT  90
      ||||||||   ||||||| ||||||| ||   ||||||||||||||||||
seq2  CCCATGCAAGATTTATCA-GACAAAAAATAAAATGTCTATATGTTTTGTT  99

seq1  TTGTTGAGTTTTTTTAGTTTA--TTTTTATTTTATGTGTACGAATGTTTG  138
      |   |||||||||||||||||  |||| |||||||||||||||||| |||
seq2  T--GTGAGTTTTTTTAGTTTAATTTTTAATTTTATGTGTACGAATG-TTG  146

seq1  CCTG-AATGTGTACCTATGTACCACATATGTGCATTGCATACGGAGG-CC  186
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTGAAATGTGTACCTATGTACCACATATGTGCATTGCATACGGAGGCCC  196

seq1  AGAGGAGGGTGTCAGATACCCTAGGCC-TAAAGTTACAGATGGTTGTGGG  235
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAGGAGGGTGTCAGATACCCTAGGCCTTAAAGTTACAGATGGTTGTGGG  246

seq1  CTGTCATGTGGGTGTTGGAAATTGAACCTGGGTGCTTTGGAAGAGCAGCC  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGTGGGTGTTGGAAATTGAACCTGGGTGCTTTGGAAGAGCAGCC  296

seq1  AATGTTAATTCTTAATCTCTCCAGTCCCTGTCGTTGTCGTTGTCGTCGAC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAATTCTTAATCTCTCCAGTCCCTGTCGTTGTCGTTGTCGTCGAC  346

seq1  ATCGTCGTCATCGTCGTCATCGTCGTCGTCGTCATCATCATCATCGTTGT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCGTCATCGTCGTCATCGTCGTCGTCGTCATCATCATCATCGTTGT  396

seq1  TGTTGTTGTTTAGTTGGTTGGTTTTGTTTTGTTTTGTTTTTAATACAGGG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTTAGTTGGTTGGTTTTGTTTTGTTTTGTTTTTAATACAGGG  446

seq1  TGTCATGAAGACTTGAGTTTTAGCCCAGGCTGGCCTATAACTCACTAGCC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGAAGACTTGAGTTTTAGCCCAGGCTGGCCTATAACTCACTAGCC  496

seq1  AAGGAAAACCTTGCCTCCACCTTCCAAGTCCTGAAATTACAGGCGTGTTC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAACCTTGCCTCCACCTTCCAAGTCCTGAAATTACAGGCGTGTTC  546

seq1  CACAATGCTGGACTCAGACATGCACTCTCTAAGGACATATTTAGTAACAT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGCTGGACTCAGACATGCACTCTCTAAGGACATATTTAGTAACAT  596

seq1  GGTAGAGTGAGAAAAGGAGCAAGGGATGGGAATGAGATGAAGGAAGCTAA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTGAGAAAAGGAGCAAGGGATGGGAATGAGATGAAGGAAGCTAA  646

seq1  GAAGGAAATGATTCTGAAGGAAGAACGTGTGACCCAACTCTGTGCACATA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAATGATTCTGAAGGAAGAACGTGTGACCCAACTCTGTGCACATA  696

seq1  AAACCTAAACAAACACAAAGACACCCCAACCTGCTCGGACCTCTTTTCCA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAAACAAACACAAAGACACCCCAACCTGCTCGGACCTCTTTTCCA  746

seq1  GAGGAGGGCATCAAGGGCTGACACAGTCGCTCTTTTCTCTTCATCTTGGC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGCATCAAGGGCTGACACAGTCGCTCTTTTCTCTTCATCTTGGC  796

seq1  TTCCTTGCATCTGGCCCGCATTGTTGCTGAGAATTCTGCATGGCATGTGC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCATCTGGCCCGCATTGTTGCTGAGAATTCTGCATGGCATGTGC  846

seq1  CATCCTGTCAAACTGTGCATGCACAGAATGATTCTAGGGGGCCCCAACTG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTCAAACTGTGCATGCACAGAATGATTCTAGGGGGCCCCAACTG  896

seq1  GAACCTGAGCCCCATTCCTAGCCCCATGGCAGCCCCCGAGACTTCCTCAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGAGCCCCATTCCTAGCCCCATGGCAGCCCCCGAGACTTCCTCAT  946

seq1  CCTCTGGAGAAATAAATGAGGGAGTGGACAAAGAAGGGAAGACAGGAGAA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGAGAAATAAATGAGGGAGTGGACAAAGAAGGGAAGACAGGAGAA  996

seq1  AGACAGAGAGAACTCGCCCAGAGGACATAGCAGGTACCAGGTTAGTCTAG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGAGAACTCGCCCAGAGGACATAGCAGGTACCAGGTTAGTCTAG  1046

seq1  CTTATGACGCATGACCCTGTCTCAAAGGAATTTTTTTTTTAAGTAAACTA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGACGCATGACCCTGTCTCAAAGGAATTTTTTTTTTAAGTAAACTA  1096

seq1  GGAGTGAAGAAATAGAACAAAGAAGTCCACAGAATTC  1122
      |||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAAGAAATAGAACAAAGAAGTCCACAGAATTC  1133

seq1: chr4_118626755_118627927
seq2: B6Ng01-236C08.g_68_1223

seq1  GAATTCCCAGACAACTGGGAGAGGATGATGTACAATCAGAGTACAACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGACAACTGGGAGAGGATGATGTACAATCAGAGTACAACTAC  50

seq1  TCTGCTTTGCAGCAACGGGTGATTGGTCCAGGCCAGTTATTGCTTAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTGCAGCAACGGGTGATTGGTCCAGGCCAGTTATTGCTTAATAA  100

seq1  CCTCAGCTCAACCAACATCAATTAATTGAAGGAAAGATTTTTTTATTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTCAACCAACATCAATTAATTGAAGGAAAGATTTTTTTATTGTG  150

seq1  CCTGTCAGATGAAAAACTAAGATACAATAAAAGTAAGCGTCATGTTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAGATGAAAAACTAAGATACAATAAAAGTAAGCGTCATGTTCAAG  200

seq1  ATTACAGCTAGAAGTGGGAGTTTATGTGGCACAGTCTCAGAGCCTGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGCTAGAAGTGGGAGTTTATGTGGCACAGTCTCAGAGCCTGGCTC  250

seq1  TCAGGCACTGCCTTGCTCTGCTCTGGTACACAGGCTCTCAAGCAGGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCACTGCCTTGCTCTGCTCTGGTACACAGGCTCTCAAGCAGGAGGG  300

seq1  GAGGGATGCAAAGGCTTCACACTGTGTCTCCTTGAGCTCATAGAGATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGCAAAGGCTTCACACTGTGTCTCCTTGAGCTCATAGAGATTGC  350

seq1  TGAGTTTCCTCCCCAGGCATTGTGGAGCCATGGCCTCTGCAGAAGCAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCCTCCCCAGGCATTGTGGAGCCATGGCCTCTGCAGAAGCAAGC  400

seq1  ACAAGACTGGACCAAACCTTCCTAAGTGAGAGGGGGAATGGCAGGTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACTGGACCAAACCTTCCTAAGTGAGAGGGGGAATGGCAGGTTCAA  450

seq1  AGCTCGTCTCATCGTAAGATGTCCTCCATCTAGTCTCCACCTGAATGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGTCTCATCGTAAGATGTCCTCCATCTAGTCTCCACCTGAATGTGC  500

seq1  CAGGCCACGGAGCTGGGTTGAAAAGACCGGGAAAGATCTATGGAAATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCACGGAGCTGGGTTGAAAAGACCGGGAAAGATCTATGGAAATTAA  550

seq1  GTTAGAAAATTATGAGCAGTTTGGTGACATACTGGAATTCTCAGTAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAAATTATGAGCAGTTTGGTGACATACTGGAATTCTCAGTAAGTA  600

seq1  ATTATTTGAGGACGGAAGAAGGAAAGAAGGAGAGAGGGTTGACTGACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGAGGACGGAAGAAGGAAAGAAGGAGAGAGGGTTGACTGACCTT  650

seq1  GTGTCCAGCTGGAAAAGAAGAGCAGGCGATGAGGGAAAAGACTACAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAGCTGGAAAAGAAGAGCAGGCGATGAGGGAAAAGACTACAGGAG  700

seq1  TGTGAGGATGTATACAGGGGGAAAAAATTACATAATGTCCTGGTTACGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGATGTATACAGGGGGAAAAAATTACATAATGTCCTGGTTACGTC  750

seq1  TGAGCACAAGCCTCACAGACACCTGGAGCTTGCCAACAACCTAAAGATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAAGCCTCACAGACACCTGGAGCTTGCCAACAACCTAAAGATGA  800

seq1  GAAGCCACCTCGTACCTAGTGGGTCCACAGGACTGTTACTGCCGGCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACCTCGTACCTAGTGGGTCCACAGGACTGTTACTGCCGGCTCTT  850

seq1  AGCAGGAAAGGATCAGGAAGCCCATAGGCAGCTGAGTGCAGAGAGTTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAAGGATCAGGAAGCCCATAGGCAGCTGAGTGCAGAGAGTTAGC  900

seq1  A-TTCCAGGAAGCTCCTTCCCCAGAACAACCCCAAGGTTTC-TGAGAGTT  948
      | ||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  ATTTCCAGGAAGCTCCTTCCCCAGAACAACCCCAAAGTTTCTTGAGAGTT  950

seq1  TGGGAACTGAGCCCTC-TGACTTCCTCCATGGAACAAGCCAGCACTGCCC  997
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  TGGGAACTGAGCCCTCTTGACTTCCTCCATGGAAC-AGCCAGCACTGCCC  999

seq1  CTGAAGGCATTGCCCAAAGGATTCTGGGCTGCAGACGAAAGGAGACTCAG  1047
      ||||||||||||||  ||||||||| ||||||||||||||||||||||||
seq2  CTGAAGGCATTGCC--AAGGATTCT-GGCTGCAGACGAAAGGAGACTCAG  1046

seq1  CCATCTCAGCCTCCTCCAGCAGGACAAGCTGCTAAGGTTTTACA-CCCCT  1096
       ||||||| | ||   ||||||||| ||||||||||  |||||| |||||
seq2  GCATCTCATCTTC--TCAGCAGGAC-AGCTGCTAAG--TTTACACCCCCT  1091

seq1  GCCTCTGCCCACCCCTACCAATGCCTGCCCCGTGCCAAGACAGAGTTCTC  1146
      ||||||||||| ||||| |||||||||  ||||| | |||| ||| ||||
seq2  GCCTCTGCCCA-CCCTA-CAATGCCTG-GCCGTGTC-AGAC-GAG-TCTC  1135

seq1  CAAATTTGTTCAACAAGAACACTAAAA  1173
             ||   |||||||||||||||
seq2  ------AGTGTCACAAGAACACTAAAA  1156