BAC Information

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BAC

Clone NameB6Ng01-236K03
Chromosome4 (Build37)4 (Build37)
Map Location 20,647,767 - 20,648,351150,771,415 - 150,771,701
singlet/doubletsingletsinglet
Overlap geneE130310K16Rik
Upstream geneSlc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genePrdm13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236K03.bB6Ng01-236K03.g
ACCGA047804GA047805
length579509
definitionB6Ng01-236K03.b B6Ng01-236K03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,647,767 - 20,648,351)(150,771,415 - 150,771,701)
sequence
ctttttaatctctttcttcatatttcaccttagcaactcaagccaattgt
tattttcctctattgtgtcagttaatcattcttgacagatttagaagata
attagggttctttctattcttctctgttctttcatgcaaaaacaagacag
aattttcaccagttcacatgaagattcctgtatctgcacctgccaatagc
atgtgttcacatcttgaaagactgtgcaacagtttcttcggtcttgggcc
ttttcttcgaggtcactgtgatgttctctttccatccgggctgcaagagg
cttttccagttgccgtctactgttcattctaaaatcatgaacataggtta
cagatttcaagcaacatacttctagacagtgattatgtctgttttttatg
attgttgagtataaataagcaaactataacaataatttataaattattta
aatattttatttataaaatatttaaaatattttataatttataatttgtg
agggttaagattatagtgtatgccccagtacaggggaacgccagggccaa
aaagtgggagtgggtgggtaggggaatga

aagtagaacttagaagttttgggagaaaagactttgagagtaagagcatt
attgtggcattagagtaggaggagagagtaagatagaaggagaatgtaga
gtggaacaacttagaaactatagataatataagaaaaactaagagagcaa
taaacagaatgcacagggaaagagaaaaaaagaagaagctgcagagagag
caggagaggcaggcaggcttctccttaccatgggacagaacaggtttctc
ttaataacaaggcaggcttaatcttattaaaggaacaaagcattcttctt
acaaacttgggtttaattcatttagcattaaaagggtagaagccttttct
ttctctatgcaataaagattggagttcagttttcatccagaatgagtcag
ttctttctgcactggtgcttggtcttttgctccaaatgcatatgtaagta
taggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtg
tgactatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_20647767_20648351
seq2: B6Ng01-236K03.b_44_628 (reverse)

seq1  TCATTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCTGT  50

seq1  ACTGGGGCATACACTATAATCTTAACCCTCACAAATTATAAATTATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCATACACTATAATCTTAACCCTCACAAATTATAAATTATAAAA  100

seq1  TATTTTAAATATTTTATAAATAAAATATTTAAATAATTTATAAATTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAATATTTTATAAATAAAATATTTAAATAATTTATAAATTATTG  150

seq1  TTATAGTTTGCTTATTTATACTCAACAATCATAAAAAACAGACATAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTTGCTTATTTATACTCAACAATCATAAAAAACAGACATAATCA  200

seq1  CTGTCTAGAAGTATGTTGCTTGAAATCTGTAACCTATGTTCATGATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAGAAGTATGTTGCTTGAAATCTGTAACCTATGTTCATGATTTTA  250

seq1  GAATGAACAGTAGACGGCAACTGGAAAAGCCTCTTGCAGCCCGGATGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAACAGTAGACGGCAACTGGAAAAGCCTCTTGCAGCCCGGATGGAA  300

seq1  AGAGAACATCACAGTGACCTCGAAGAAAAGGCCCAAGACCGAAGAAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACATCACAGTGACCTCGAAGAAAAGGCCCAAGACCGAAGAAACTG  350

seq1  TTGCACAGTCTTTCAAGATGTGAACACATGCTATTGGCAGGTGCAGATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGTCTTTCAAGATGTGAACACATGCTATTGGCAGGTGCAGATAC  400

seq1  AGGAATCTTCATGTGAACTGGTGAAAATTCTGTCTTGTTTTTGCATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTTCATGTGAACTGGTGAAAATTCTGTCTTGTTTTTGCATGAAA  450

seq1  GAACAGAGAAGAATAGAAAGAACCCTAATTATCTTCTAAATCTGTCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGAAGAATAGAAAGAACCCTAATTATCTTCTAAATCTGTCAAGA  500

seq1  ATGATTAACTGACACAATAGAGGAAAATAACAATTGGCTTGAGTTGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAACTGACACAATAGAGGAAAATAACAATTGGCTTGAGTTGCTAA  550

seq1  GGTGAAATATGAAGAAAGAGATTAAAAAGGAATTC  585
      |||||||||||||||||||||||||||||||||||
seq2  GGTGAAATATGAAGAAAGAGATTAAAAAGGAATTC  585


seq1: chr4_150771415_150771701
seq2: B6Ng01-236K03.g_390_580 (reverse)

seq1  ACATA--CACATTCACACACACACACACACACACACACACACACACACAC  48
      |||||  |||| ||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTCACACTCACACACACACACACACACACACACACACACACACAC  50

seq1  ACACACC-AGACCCCAAACATGGAAAGTACTAGAAAACAATAATGAGTTT  97
      ||||||| | |   |  ||||   | | | | |           |||   
seq2  ACACACCTATA---CTTACAT---ATGCATTTG-----------GAGCAA  83

seq1  AAG-CCAATCAACAGTTATAGCCAATGGAACAGATTCGGTTTTCAAAGTA  146
      ||| |||| || ||||              |||                 
seq2  AAGACCAAGCACCAGT-------------GCAG-----------------  103

seq1  AAAGAAAAGGTAGCTGCCCTAATTTTAAAGAAAAGTCTGACTATTTTGTT  196
      ||||||       ||| |  | | |  | |||||  ||||          
seq2  AAAGAA-------CTGACTCATTCTGGATGAAAA--CTGA----------  134

seq1  ACTTAAACACACCATGACCAGCCCCTAAGCAGTGGATGGGGAGACACATA  246
      |||              |||  |  |    | || ||      | | | |
seq2  ACT--------------CCAATCTTT----ATTGCAT------AGAGAAA  160

seq1  GAAAACACCAGTCCCAACAATGCAAGTTTTAATGCTAAATG  287
      |||||  |   | ||           |||||||||||||||
seq2  GAAAAGGCTTCTACC----------CTTTTAATGCTAAATG  191


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