BAC Information

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BAC

Clone NameB6Ng01-236K24
Chromosome4 (Build37)
Map Location 139,388,498 - 139,543,845
singlet/doubletdoublet
Overlap genePax7, Gm1667, Klhdc7a
Upstream genePla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2
Downstream geneIgsf21, LOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236K24.bB6Ng01-236K24.g
ACCGA047846GA047847
length390524
definitionB6Ng01-236K24.b B6Ng01-236K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,543,450 - 139,543,845)(139,388,498 - 139,389,026)
sequence
tgtgagaggaaaagcagagcgttcagaattcacttgtagcacaggctaac
ctctaactcattttgtagctgaggatgacctttgaactcctgttcttctg
tgtctgtgcccccagcccctagttttgggattatagatgcatacctacca
cgcccagtttaagctgagctggaaatcgaatccagaactaggcaaacact
ctaccaactgagccacatccctaaccccaagatgtgctttgaaatgcttt
ggcctgagtttggaccctattacatccacctgcattccaaatgcctgaat
gaacaacatggcccctgactataaaagcatttgggaaattcagtcatcta
tacatctggagaggagaggagagaattaggggaggggagg
cccggggagtcgcatcctgcggcgaaaggccggcagccggtgacccacgg
agcgcgggccgagggtcagcggagtccacgcagaaactgacaagtgtccg
ctctagaaacttcccgtgtcccacgcggagactgggacccagcagagccc
aggaagccccgctgctcgctcccctggagggtgccatctccgaggtcctc
cgggggaccctgtaaaggcctcctgcgcgctctcttaccttccaggggga
agccggtgcgcgggtagttctgccccgggccgggtctcatcatcctgggg
accgcgccgggcagcgccgccattcctgcgcacgctggagacgaatccag
agtcggctggataaacctcttggcgtctcttcctttcacccctgctgcga
tcctcctctcctcttcttccctcccccccccactagcctcttccccctcc
cttctgcacccccccccacccggttgcagacgcgcccctttccagaagct
gggcgcgggggggggtgaggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_139543450_139543845
seq2: B6Ng01-236K24.b_46_441 (reverse)

seq1  CCTCCCCTCCCCTAATTCTCTCCTCTCCTCTCCAGATGTATAGATGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCCCCTAATTCTCTCCTCTCCTCTCCAGATGTATAGATGACTG  50

seq1  AATTTCCCAAATGCTTTTATAGTCAGGGGCCATGTTGTTCATTCAGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCAAATGCTTTTATAGTCAGGGGCCATGTTGTTCATTCAGGCAT  100

seq1  TTGGAATGCAGGTGGATGTAATAGGGTCCAAACTCAGGCCAAAGCATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGCAGGTGGATGTAATAGGGTCCAAACTCAGGCCAAAGCATTTC  150

seq1  AAAGCACATCTTGGGGTTAGGGATGTGGCTCAGTTGGTAGAGTGTTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACATCTTGGGGTTAGGGATGTGGCTCAGTTGGTAGAGTGTTTGCC  200

seq1  TAGTTCTGGATTCGATTTCCAGCTCAGCTTAAACTGGGCGTGGTAGGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTGGATTCGATTTCCAGCTCAGCTTAAACTGGGCGTGGTAGGTAT  250

seq1  GCATCTATAATCCCAAAACTAGGGGCTGGGGGCACAGACACAGAAGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTATAATCCCAAAACTAGGGGCTGGGGGCACAGACACAGAAGAACA  300

seq1  GGAGTTCAAAGGTCATCCTCAGCTACAAAATGAGTTAGAGGTTAGCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCAAAGGTCATCCTCAGCTACAAAATGAGTTAGAGGTTAGCCTGT  350

seq1  GCTACAAGTGAATTCTGAACGCTCTGCTTTTCCTCTCACAGAATTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAAGTGAATTCTGAACGCTCTGCTTTTCCTCTCACAGAATTC  396

seq1: chr4_139388498_139389026
seq2: B6Ng01-236K24.g_67_596

seq1  GAATTCCCCGGGGAGTCGCATCCTGCGGCGAAAGGCCGGCAGCCGGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCGGGGAGTCGCATCCTGCGGCGAAAGGCCGGCAGCCGGTGAC  50

seq1  CCACGGAGCGCGGGCCGAGGGTCAGCGGAGTCCACGCAGAAACTGACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGAGCGCGGGCCGAGGGTCAGCGGAGTCCACGCAGAAACTGACAAG  100

seq1  TGTCCGCTCTAGAAACTTCCCGTGTCCCACGCGGAGACTGGGACCCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGCTCTAGAAACTTCCCGTGTCCCACGCGGAGACTGGGACCCAGCA  150

seq1  GAGCCCAGGAAGCCCCGCTGCTCGCTCCCCTGGAGGGTGCCATCTCCGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGGAAGCCCCGCTGCTCGCTCCCCTGGAGGGTGCCATCTCCGAG  200

seq1  GTCCTCCGGGGGACCCTGTAAAGGCCTCCTGCGCGCTCTCTTACCTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCGGGGGACCCTGTAAAGGCCTCCTGCGCGCTCTCTTACCTTCCA  250

seq1  GGGGGAAGCCGGTGCGCGGGTAGTTCTGCCCCGGGCCGGGTCTCATCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGCCGGTGCGCGGGTAGTTCTGCCCCGGGCCGGGTCTCATCATC  300

seq1  CTGGGGACCGCGCCGGGCAGCGCCGCCATTCCTGCGCACGCTGGAGACGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACCGCGCCGGGCAGCGCCGCCATTCCTGCGCACGCTGGAGACGA  350

seq1  ATCCAGAGTCGGCTGGATAAACCTCTTGGCGTCTCTTCCTTTCACCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGTCGGCTGGATAAACCTCTTGGCGTCTCTTCCTTTCACCCCTG  400

seq1  CTGCGATCCTCCTCTCCTCTTCTTCCCTCCCCCCCCCACTAGCCTCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGATCCTCCTCTCCTCTTCTTCCCTCCCCCCCCCACTAGCCTCTTCC  450

seq1  CCCTCCCTTCTGCACCCCCCCCCACCCGGTTGCAGACGCGCCCC-TTCCA  499
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCTCCCTTCTGCACCCCCCCCCACCCGGTTGCAGACGCGCCCCTTTCCA  500

seq1  GAAGCTGGGCGCGGGGGGGGGTGAGGTGGG  529
      ||||||||||||||||||||||||||||||
seq2  GAAGCTGGGCGCGGGGGGGGGTGAGGTGGG  530