BAC Information

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BAC

Clone NameB6Ng01-236O21
Chromosome4 (Build37)
Map Location 55,261,533 - 55,448,424
singlet/doubletdoublet
Overlap geneLOC670211, Rad23b, LOC666953, LOC100041348
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462
Downstream geneKlf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236O21.bB6Ng01-236O21.g
ACCGA048026GA048027
length3961,002
definitionB6Ng01-236O21.b B6Ng01-236O21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,448,023 - 55,448,424)(55,261,533 - 55,262,296)
sequence
cattaattagaactataaaacacagaacacagaaatatcatctagaatct
tctcaccctaagagaaccactataaatactacttactagtttccccccca
cacacacacattttatgtacccatacatgcaaatgtatttatgtttattg
gatagaaatgtaacctcaataagtagctcagactggctccgaattaaaaa
tcttcctgcccctgccccctgcctcctgaaattacaaatatttaccacta
ggcctgtcagctttttacagaatagatttctctctctctctttcttcctt
ccttccttccttccttccttccatccttacttacttccttccttccttcc
ttcctctctctctctctctatctctctctcactctcactctctctc
gaattccaggcaagccaagtccacatagtgagatcttgtctaaaacaaaa
acaaaaacaaaacaaacaaacaaacaaacaaaaaacaaaacaaaaactga
aaccaaccaaccaaccaaactcccacaaagaaaagttgccctgttgttca
cttggtcagcagcatcaaggaaaacagacaggtggaaactctcctggggt
agtaaacccaagttgctggttcaggacaggtgagggagatagtccatcct
gactcagagtgtcttttttttttaattggatattttatttatttacattt
caaatgttatccccttttcctggtttcccctctgcaaatgccctatcctc
tccccccttaccctgcttctatgagggagctcccccacccacttaccctt
ctgcctcaccaccctagtattcctctacactgggacatcaaaccttcaca
ggaccaagagcctcccctcccatccattggggtccctgtgctctcagtcc
aatggttgactgcaagcattcgaatctgtattggtcaggatctggcagag
cctctcaggagacagatgtattaggctcctgtcagcaagcacttcttggc
atcagcaatagtgtctgggtttggtgtctgcatgtgcgatggatccccag
gtggggtaatctctggatggcctttccttaagtctctgcttcactttttg
tccctgtatttcctttagacaggggcaattctgggttaaaatcttggaga
tgggtgggtggccccatccctcaaccacaggtggggggtggtatgcttaa
ccgctggatatgggtctccacaggttctccctccctatttcagctaattg
tcatccctgtggggttcctggaaggctcttgcttttctggaatctgggac
ttttcttggttgctacccccagttccccaatcctccattcgctacacacc
ttctgtgaagtttcctgacctcagtggggttcttagaagtgactttgggt
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_55448023_55448424
seq2: B6Ng01-236O21.b_47_448 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGGAA  50
      ||||||||| ||||| |||||||||| |||||||||||||||||||||||
seq2  GAGAGAGAGTGAGAGTGAGAGAGAGATAGAGAGAGAGAGAGAGGAAGGAA  50

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  100
      ||||||||||||| ||| ||||| ||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGTAAGTAAGGATGGAAGGAAGGAAGGAAGGAAGGAAGG  100

seq1  AAGAAAGAGAGAGAGAGAAATCTATTCTGTAAAAAGCTGACAGGCCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGAGAGAGAGAAATCTATTCTGTAAAAAGCTGACAGGCCTAGT  150

seq1  GGTAAATATTTGTAATTTCAGGAGGCAGGGGGCAGGGGCAGGAAGATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATATTTGTAATTTCAGGAGGCAGGGGGCAGGGGCAGGAAGATTTT  200

seq1  TAATTCGGAGCCAGTCTGAGCTACTTATTGAGGTTACATTTCTATCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCGGAGCCAGTCTGAGCTACTTATTGAGGTTACATTTCTATCCAAT  250

seq1  AAACATAAATACATTTGCATGTATGGGTACATAAAATGTGTGTGTGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAATACATTTGCATGTATGGGTACATAAAATGTGTGTGTGTGGG  300

seq1  GGGGAAACTAGTAAGTAGTATTTATAGTGGTTCTCTTAGGGTGAGAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAACTAGTAAGTAGTATTTATAGTGGTTCTCTTAGGGTGAGAAGAT  350

seq1  TCTAGATGATATTTCTGTGTTCTGTGTTTTATAGTTCTAATTAATGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATGATATTTCTGTGTTCTGTGTTTTATAGTTCTAATTAATGGAAT  400

seq1  TC  402
      ||
seq2  TC  402

seq1: chr4_55261533_55262296
seq2: B6Ng01-236O21.g_67_830

seq1  GAATTCCAGGCAAGCCAAGTCCACATAGTGAGATCTTGTCTAAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCAAGCCAAGTCCACATAGTGAGATCTTGTCTAAAACAAAA  50

seq1  ACAAAAACAAAACAAACAAACAAACAAACAAAAAACAAAACAAAAACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACAAAACAAACAAACAAACAAACAAAAAACAAAACAAAAACTGA  100

seq1  AACCAACCAACCAACCAAACTCCCACAAAGAAAAGTTGCCCTGTTGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACCAACCAACCAAACTCCCACAAAGAAAAGTTGCCCTGTTGTTCA  150

seq1  CTTGGTCAGCAGCATCAAGGAAAACAGACAGGTGGAAACTCTCCTGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCAGCAGCATCAAGGAAAACAGACAGGTGGAAACTCTCCTGGGGT  200

seq1  AGTAAACCCAAGTTGCTGGTTCAGGACAGGTGAGGGAGATAGTCCATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCCAAGTTGCTGGTTCAGGACAGGTGAGGGAGATAGTCCATCCT  250

seq1  GACTCAGAGTGTCTTTTTTTTTTAATTGGATATTTTATTTATTTACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAGTGTCTTTTTTTTTTAATTGGATATTTTATTTATTTACATTT  300

seq1  CAAATGTTATCCCCTTTTCCTGGTTTCCCCTCTGCAAATGCCCTATCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTATCCCCTTTTCCTGGTTTCCCCTCTGCAAATGCCCTATCCTC  350

seq1  TCCCCCCTTACCCTGCTTCTATGAGGGAGCTCCCCCACCCACTTACCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTTACCCTGCTTCTATGAGGGAGCTCCCCCACCCACTTACCCTT  400

seq1  CTGCCTCACCACCCTAGTATTCCTCTACACTGGGACATCAAACCTTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCACCACCCTAGTATTCCTCTACACTGGGACATCAAACCTTCACA  450

seq1  GGACCAAGAGCCTCCCCTCCCATCCATTGGGGTCCCTGTGCTCTCAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAAGAGCCTCCCCTCCCATCCATTGGGGTCCCTGTGCTCTCAGTCC  500

seq1  AATGGTTGACTGCAAGCATTCGAATCTGTATTGGTCAGGATCTGGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTGACTGCAAGCATTCGAATCTGTATTGGTCAGGATCTGGCAGAG  550

seq1  CCTCTCAGGAGACAGATGTATTAGGCTCCTGTCAGCAAGCACTTCTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGGAGACAGATGTATTAGGCTCCTGTCAGCAAGCACTTCTTGGC  600

seq1  ATCAGCAATAGTGTCTGGGTTTGGTGTCTGCATGTGCGATGGATCCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAATAGTGTCTGGGTTTGGTGTCTGCATGTGCGATGGATCCCCAG  650

seq1  GTGGGGTAATCTCTGGATGGCCTTTCCTTAAGTCTCTGCTTCACTTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTAATCTCTGGATGGCCTTTCCTTAAGTCTCTGCTTCACTTTTTG  700

seq1  TCCCTGTATTTCCTTTAGACAGGGGCAATTCTGGGTTAAAATCTTGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTATTTCCTTTAGACAGGGGCAATTCTGGGTTAAAATCTTGGAGA  750

seq1  TGGGTGGGTGGCCC  764
      ||||||||||||||
seq2  TGGGTGGGTGGCCC  764