BAC Information

Click to search

BAC

Clone NameB6Ng01-236P19
Chromosome4 (Build37)
Map Location 13,428,882 - 13,546,985
singlet/doubletdoublet
Overlap genenone
Upstream geneOTTMUSG00000004461, LOC100039988
Downstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236P19.bB6Ng01-236P19.g
ACCGA048070GA048071
length1,1461,161
definitionB6Ng01-236P19.b B6Ng01-236P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,545,834 - 13,546,985)(13,428,882 - 13,430,069)
sequence
gaattcctctcagtagaatgagaacaatattgataatctactccaaagat
ctattttgagaaccagatgagacagagaaacatgtgtataaactatgaac
attatttaaggagacaatcatatttattattttccagtattacaggactg
gctctgctgccaagtaacttctttttctctccacctcagcttttgtgcca
aggcttcttacagaacaaggaactccccattttagcaaacctaaatggtt
catggatggtgagtgttcacctgtctccgtcttcccagcataggaactac
atgggttgcttctgtgtctggcttatttgggtgtaggagatttaattcag
atcctcacacttgcatagcaaacacttcacttactgagccatctccacag
cccctgtaagagttcttttaaaaaaacattaaaacaaagtttttgatatg
tcctgtagacctgaggtatcgaaattattatttattcttatctattaaaa
tttaaagcataaatactaaacaataaacaaatattggtgcacaccactta
tgcaattatgaccacttatttatatgtaattatgtacattttgaagcata
taatttataaattagaaaaaaatcccacagctcatgggaaaaagatacat
agcgtctgcatgtgtaatgtaaatttagtgcagcttctcattagttgtat
ggatttatggcatatactaaatagccctgtcaacatttctgaatacctag
tgcttttcttgtcagatttggcttgatggcctttaactctaccttactct
gtggcagatagtgagatcaggccaaggttgggaaaatgctatgtgggcca
gtttcatggtttgcttctgctactaagacaccacacctgcctacatcatg
tttctcttagcatctttaggaaatagccgcttgtccatgtgaaaatgaaa
ggtttatttatctaatattgatgatatgaagcttgaagcacttcttgcac
attgcgagccaggagtgtgtgtggtctgttttagaaaggacttcaggttt
ctgggtgacaatggcatctagcagaacacttcagtcttcaaatcaagact
ccaaagaagcatcaagaaagacttggatggtcagactgattgatac
gaattctttagaagaaataaatgtggattcacagacgtcaaatattccac
aaactgatctagttagctttcaaaaatatttgtcaaatagtaatgtgagg
catacaatttcagcaccactgttatgctcccttccacaaaaaaaaaaaaa
gttaggcattgctggataaccttttaaaatgtttttatatatcactggag
aatgcattgtgccttttagaataatcagagatggttttagaaaaagcaag
ctgaagttattggatgattttgttggggattttggacactcaaagttaaa
taattgaataagacttgataatctccagaaagcaagaagaatgtaaacaa
gccagagatggggtcagcgtgtgttatgagtaggacattctccttccttc
tggtgtctcgctttttcctcttctctccctccaaagtggaaacacaaaac
agcttgatgtctacctgtttaacccagagggataaaacaaattgaaggta
gtgtgtgacatcattaatggatgagcaactggaaaagtctatggtgggat
ttgtgagtttacttctggcccttagaaatcctgaagggtcatttaaccta
ataaagccttctgtttataaacaagtttttctatttgatgtcctgattct
gaagtaaggcagacatgggaacagaaactgagccagtatttacggtctgt
ttgcccctttggagcacataaaataaaaggaattaaaatacaaacatcaa
ctgtgctttgctttatataattcacaatccaaatgctcacaaagtcgaca
gtgttgatgcagttagataatgattttagaattaaaatatgcaggtttat
ttgatgactacaaagactgtgatttttggaaggagggaaagatagacaga
actatttcttttaagcttgcaagtcatgaaggagatggtcaatttaccac
tttaagaaacacctcaatcatttactacctaggatccagctacacagtat
gctttttctgctacgatgaatatatgaacattatcagcatcatcggacaa
gctagtatgagtcatatctgagctccaaatatttacataatttagacaac
ttcattagattacctgccataccatcggatggatttaaggaactagggaa
taatctgcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13545834_13546985
seq2: B6Ng01-236P19.b_45_1190 (reverse)

seq1  GTATCAATCATGTTCTTGCCACTCAAGTCTTTTCTTGATGCTTCTTTGGA  50
      ||||||||||   |||  |||  |||||| ||||||||||||||||||||
seq2  GTATCAATCA--GTCTGACCATCCAAGTC-TTTCTTGATGCTTCTTTGGA  47

seq1  GTCCTTTGATTTGGAGACTTGAGTGTTCTGCTAGATGCCCTTTGTCA-CC  99
      |||  |||||||| |||||  |||||||||||||||| || |||||| ||
seq2  GTC--TTGATTTGAAGACTGAAGTGTTCTGCTAGATG-CCATTGTCACCC  94

seq1  AGGAACCTGAAGTCCTTTCTAAAACAGACCACAACACACTCCTGGCTCGC  149
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGAAACCTGAAGTCCTTTCTAAAACAGACCAC-ACACACTCCTGGCTCGC  143

seq1  AATGTGCAAGGAAGTGGCTTCAAGC-TCATATCATCAATATTAGATAAAT  198
      ||||||||| ||||| ||||||||| ||||||||||||||||||||||||
seq2  AATGTGCAA-GAAGT-GCTTCAAGCTTCATATCATCAATATTAGATAAAT  191

seq1  AAACC-TTCATTTTCACATGGACAAGCGGCTATTTCCTAAAGATGCTAAG  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTCATTTTCACATGGACAAGCGGCTATTTCCTAAAGATGCTAAG  241

seq1  AGAAACATGATGTAGGCAGGTGTGGTGTCTTAGTAGCAGAAGCAAACCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATGATGTAGGCAGGTGTGGTGTCTTAGTAGCAGAAGCAAACCAT  291

seq1  GAAACTGGCCCACATAGCATTTTCCCAACCTTGGCCTGATCTCACTATCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGCCCACATAGCATTTTCCCAACCTTGGCCTGATCTCACTATCT  341

seq1  GCCACAGAGTAAGGTAGAGTTAAAGGCCATCAAGCCAAATCTGACAAGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAGTAAGGTAGAGTTAAAGGCCATCAAGCCAAATCTGACAAGAA  391

seq1  AAGCACTAGGTATTCAGAAATGTTGACAGGGCTATTTAGTATATGCCATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTAGGTATTCAGAAATGTTGACAGGGCTATTTAGTATATGCCATA  441

seq1  AATCCATACAACTAATGAGAAGCTGCACTAAATTTACATTACACATGCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATACAACTAATGAGAAGCTGCACTAAATTTACATTACACATGCAG  491

seq1  ACGCTATGTATCTTTTTCCCATGAGCTGTGGGATTTTTTTCTAATTTATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTATGTATCTTTTTCCCATGAGCTGTGGGATTTTTTTCTAATTTATA  541

seq1  AATTATATGCTTCAAAATGTACATAATTACATATAAATAAGTGGTCATAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATGCTTCAAAATGTACATAATTACATATAAATAAGTGGTCATAA  591

seq1  TTGCATAAGTGGTGTGCACCAATATTTGTTTATTGTTTAGTATTTATGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAAGTGGTGTGCACCAATATTTGTTTATTGTTTAGTATTTATGCT  641

seq1  TTAAATTTTAATAGATAAGAATAAATAATAATTTCGATACCTCAGGTCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTAATAGATAAGAATAAATAATAATTTCGATACCTCAGGTCTA  691

seq1  CAGGACATATCAAAAACTTTGTTTTAATGTTTTTTTAAAAGAACTCTTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATATCAAAAACTTTGTTTTAATGTTTTTTTAAAAGAACTCTTAC  741

seq1  AGGGGCTGTGGAGATGGCTCAGTAAGTGAAGTGTTTGCTATGCAAGTGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGTGGAGATGGCTCAGTAAGTGAAGTGTTTGCTATGCAAGTGTG  791

seq1  AGGATCTGAATTAAATCTCCTACACCCAAATAAGCCAGACACAGAAGCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTGAATTAAATCTCCTACACCCAAATAAGCCAGACACAGAAGCAA  841

seq1  CCCATGTAGTTCCTATGCTGGGAAGACGGAGACAGGTGAACACTCACCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTAGTTCCTATGCTGGGAAGACGGAGACAGGTGAACACTCACCAT  891

seq1  CCATGAACCATTTAGGTTTGCTAAAATGGGGAGTTCCTTGTTCTGTAAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAACCATTTAGGTTTGCTAAAATGGGGAGTTCCTTGTTCTGTAAGA  941

seq1  AGCCTTGGCACAAAAGCTGAGGTGGAGAGAAAAAGAAGTTACTTGGCAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGCACAAAAGCTGAGGTGGAGAGAAAAAGAAGTTACTTGGCAGC  991

seq1  AGAGCCAGTCCTGTAATACTGGAAAATAATAAATATGATTGTCTCCTTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGTCCTGTAATACTGGAAAATAATAAATATGATTGTCTCCTTAA  1041

seq1  ATAATGTTCATAGTTTATACACATGTTTCTCTGTCTCATCTGGTTCTCAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTCATAGTTTATACACATGTTTCTCTGTCTCATCTGGTTCTCAA  1091

seq1  AATAGATCTTTGGAGTAGATTATCAATATTGTTCTCATTCTACTGAGAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATCTTTGGAGTAGATTATCAATATTGTTCTCATTCTACTGAGAGG  1141

seq1  AATTC  1152
      |||||
seq2  AATTC  1146

seq1: chr4_13428882_13430069
seq2: B6Ng01-236P19.g_65_1225

seq1  GAATTCTTTAGAAGAAATAAATGTGGATTCACAGACGTCAAATATTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAAGAAATAAATGTGGATTCACAGACGTCAAATATTCCAC  50

seq1  AAACTGATCTAGTTAGCTTTCAAAAATATTTGTCAAATAGTAATGTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATCTAGTTAGCTTTCAAAAATATTTGTCAAATAGTAATGTGAGG  100

seq1  CATACAATTTCAGCACCACTGTTATGCTCCCTTCCACAAAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATTTCAGCACCACTGTTATGCTCCCTTCCACAAAAAAAAAAAAA  150

seq1  GTTAGGCATTGCTGGATAACCTTTTAAAATGTTTTTATATATCACTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCATTGCTGGATAACCTTTTAAAATGTTTTTATATATCACTGGAG  200

seq1  AATGCATTGTGCCTTTTAGAATAATCAGAGATGGTTTTAGAAAAAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTGTGCCTTTTAGAATAATCAGAGATGGTTTTAGAAAAAGCAAG  250

seq1  CTGAAGTTATTGGATGATTTTGTTGGGGATTTTGGACACTCAAAGTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTATTGGATGATTTTGTTGGGGATTTTGGACACTCAAAGTTAAA  300

seq1  TAATTGAATAAGACTTGATAATCTCCAGAAAGCAAGAAGAATGTAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAATAAGACTTGATAATCTCCAGAAAGCAAGAAGAATGTAAACAA  350

seq1  GCCAGAGATGGGGTCAGCGTGTGTTATGAGTAGGACATTCTCCTTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGATGGGGTCAGCGTGTGTTATGAGTAGGACATTCTCCTTCCTTC  400

seq1  TGGTGTCTCGCTTTTTCCTCTTCTCTCCCTCCAAAGTGGAAACACAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTCGCTTTTTCCTCTTCTCTCCCTCCAAAGTGGAAACACAAAAC  450

seq1  AGCTTGATGTCTACCTGTTTAACCCAGAGGGATAAAACAAATTGAAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGATGTCTACCTGTTTAACCCAGAGGGATAAAACAAATTGAAGGTA  500

seq1  GTGTGTGACATCATTAATGGATGAGCAACTGGAAAAGTCTATGGTGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGACATCATTAATGGATGAGCAACTGGAAAAGTCTATGGTGGGAT  550

seq1  TTGTGAGTTTACTTCTGGCCCTTAGAAATCCTGAAGGGTCATTTAACCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTTTACTTCTGGCCCTTAGAAATCCTGAAGGGTCATTTAACCTA  600

seq1  ATAAAGCCTTCTGTTTATAAACAAGTTTTTCTATTTGATGTCCTGATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCCTTCTGTTTATAAACAAGTTTTTCTATTTGATGTCCTGATTCT  650

seq1  GAAGTAAGGCAGACATGGGAACAGAAACTGAGCCAGTATTTACGGTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGGCAGACATGGGAACAGAAACTGAGCCAGTATTTACGGTCTGT  700

seq1  TTGCCCCTTTGGAGCACATAAAATAAAAGGAATTAAAATACAAACATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCTTTGGAGCACATAAAATAAAAGGAATTAAAATACAAACATCAA  750

seq1  CTGTGCTTTGCTTTATATAATTCACAATCCAAATGCTCACAAAGTCGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTTGCTTTATATAATTCACAATCCAAATGCTCACAAAGTCGACA  800

seq1  GTGTTGATGCAGTTAGATAATGATTTTAGAATTAAAATATGCAGGTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGATGCAGTTAGATAATGATTTTAGAATTAAAATATGCAGGTTTAT  850

seq1  TTGATGACTACAAAGACTGTGATTTTTGGAAGGAGGGAAAGATAGACAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGATGACTACAAAGACTGTGATTTTTGGAAGGAGGGAAAGATAGAC-AG  899

seq1  AACTATTTCTTTTAAGCTTGCAAGTCATGAAGGAGATGGTCAATTTACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACTATTTCTTTTAAGCTTGCAAGTCATGAAGGAGATGGTCAATTTACC-  948

seq1  ACTTTAAGAAACACCTCAATCATTTACTACCTA-GATCCAGCTACACAGT  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTTTAAGAAACACCTCAATCATTTACTACCTAGGATCCAGCTACACAGT  998

seq1  ATGCCTTTTCTGCTACAAATGAATATAATGACAATAATCAGCATCATCAG  1049
      |||| |||||||||||  |||||||| ||||  || |||||||||||| |
seq2  ATGCTTTTTCTGCTAC-GATGAATAT-ATGAACATTATCAGCATCATCGG  1046

seq1  ACAAAGGCCTAGTATGGAGGTTCATATTCTTGAAGCTCCAGATATTTAAT  1099
      ||||    ||||||| |||  ||||| |||   ||||||| |||||||  
seq2  ACAA---GCTAGTAT-GAG--TCATA-TCT--GAGCTCCAAATATTTA--  1085

seq1  AATAAATATAGACAAAAATATCATTTAAGAAATAACCTTGTCCATACTCA  1149
       || ||| |||||   ||  |||||    | || ||||   |||||| ||
seq2  CAT-AATTTAGAC---AACTTCATT----AGATTACCT--GCCATAC-CA  1124

seq1  TCAGTGATGG-TTTAAGGGACATAGTAGATAATCTGCAGA  1188
      ||   ||||| ||||||| || |||   ||||||||||||
seq2  TC--GGATGGATTTAAGGAAC-TAGGGAATAATCTGCAGA  1161