BAC Information

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BAC

Clone NameB6Ng01-237B03
Chromosome10 (Build37)4 (Build37)
Map Location 128,342,316 - 128,343,16426,810,776 - 26,811,887
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11
Downstream geneCd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237B03.bB6Ng01-237B03.g
ACCGA048129GA048130
length9961,098
definitionB6Ng01-237B03.b B6Ng01-237B03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(128,342,316 - 128,343,164)(26,810,776 - 26,811,887)
sequence
gaattcccaaacctgatagaacaaacaaacaaacaaacaaacttcaacaa
agtggctatatataaaattaactcaagcaaatcagtagacttcctatact
caaaggataaaccaaatgagaaagaaattaggaaatgacacccttcacaa
tagtcacaaataatataaagtagatttttgtgactctaaccaagcaagtg
aaatatctgtatgataagaatttcagttttctgaagaaagaagtcaaaga
agatctctgaaaatggagagatctcccatgttaatggattggtagggtta
acacagtaaaaatgtccatttgccaaaagcaatatacagagtcaatgcaa
tccccatctttatcaatgtttttaagcttaatattagcaacattttctct
ctttatttctcataattttttttattttatatgtgtgtgctttgcctaca
tataagtctgtactgcatgtgtgtgatagtcacagaggccagaagaggat
gttatatctcaagggaatgaagctaaaatattaatgagctcccaggcagc
cagggcttttgtttgtttttgtttgttttgttttacatattcacttttct
tctgtctcggtggcttcccactcactgcctccaacaatcttcccccatcc
tcttccccttctcctctgaactggtagggccaccctgcatatgcccacac
acaccctggcacttcaagactctgtgaggctaggtgcttcctctgctact
gaggtcacagaaggcagcctgactaatagaacatatcccatgtacagcca
atagcttttgggatagcccccggtccagttgttcagaaccatttgaatgt
caagctgcacatctactacatatgtgcagggaggcctaggtccagcccat
gtatgttctttggttggtggttctgattctgagatccttgaggtgcagtt
agttcactcatggctctctgtgagttcctgtccctttggatgcact
gaattcaatttaatttgctgttctatcacagaagcctacaagagagccca
ccacaatatgtgaaattcaaattatgattgctgacaaaagtcaataaaat
gtgtacaatttagaacggatatggtgctacatgctgacctcgtcagaaag
agtatttgctatctatacgcaattcctagcatttattttgagttccaatt
cagaacacatgcacttttgaaagacaacctaggcaagcaacgtgtgtaga
gtacttgcttagaaataaactacacaaagcctcaggtttgattcatagca
ccacataaaccaaattttgtggtccataactataaccctagtagttaggc
agctgatataacagaagtgtaaattcagggtcatctttggctacatagca
agttcaatttcagctcaagaaatgtcagatcctgtctcataaaataaagc
tatcttggtaatttcagttagagtaaaagattttcattctaattgctttc
agagtagagtcatataatcaattacaattaaatttatggactccaacgaa
tgctctcctgcagcttgtccaggttgcaccactgcattaaaaactgcttt
caaacagcacaattagctaaagatatcatactcacactttgtgcatctcg
ggttctttctctcgttgtaaccgtgcattcttcagctgtaaattctcttc
tcaccacaaatagactctcggaacacatacagcattgctgcttgctttgt
aactctccaggctttccagaactcatatgcaatatacctttcgttgtatt
ggcttgttttttaggttttaattcaattaaaagtaataatataaaattaa
tatttttgatctattggaacacctcagattagaaatatttttgggacttc
tttgctagcatctttatgcattctgcctatcctactccaatcttcatgta
gtacatgaaaccagaccttgaaagagccttcatgctataagctctgcaaa
ctctacgcatctcatgatgcatctagcactatacacagcagaccactact
agtcagtccccctgtcttgcatctaaagaatgtctagcatcccgcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_128342316_128343164
seq2: B6Ng01-237B03.b_584_703

seq1  CCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAAAAAAAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAAACCAAAACAAAACACCCCCCCCAAAACAAATAAACAAACAAACAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAACCCCCAAAACAACAACAACAAAAACAAAGAAAGAAAGAAAGAAAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGTCATG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AATACTCTTTTCTTTGGCATTTTGACTTCTTACCCATATCCTGCCAGGTC  250
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGATGTGCCTAGAGTATTCCGCTGGGAGGACATAATTCATAAAACTGC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTTAGCTTAGGTGATTGCCTGATCTTTGCATTTTCTTTTATAGAAGAT  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTACATCTCGTGGGAAGTGAAGTGAGTGTGTAAGGGGCAGATGAGGTACT  400
                                                        
seq2  --------------------------------------------------  0

seq1  GAATAATGTGTATTATTGACATGGGCACACCCGTGGCTTTTTTGTTTGTT  450
                         |  ||   || ||  |||  |||||||||||
seq2  -------------------CCAGG---CAGCCAGGGC--TTTTGTTTGTT  26

seq1  TGTTTTTGTTTTTTTTT-----TTC-CTTGAACCAGGGACTCTATGTAGC  494
      | | |||||||| ||||     ||| |||           ||| | | | 
seq2  TTTGTTTGTTTTGTTTTACATATTCACTT----------TTCT-TCT-GT  64

seq1  CTTTGTTGATTTGGAATTCCAGGCTGGCCTGGAACTCAGAGCTCCACCTG  544
      ||  || | ||   | |  ||  || ||||  ||  ||    ||| ||  
seq2  CTCGGTGGCTTCCCACT--CA--CT-GCCTCCAA--CAATCTTCCCCCAT  107

seq1  CCTCTGCC---TCCTGTTGCTGGGATTAAAGGTGTGCACAACTATCTCCT  591
      ||||| ||   ||                                     
seq2  CCTCTTCCCCTTC-------------------------------------  120

seq1  GGATTTATCACAACGTTGGGACTAGTGGCTTATTTAACATACCAAATGGA  641
                                                        
seq2  --------------------------------------------------  120

seq1  CCTGGGCTCCACATTCTCCCGCTCTCCCTCAGTCTCTACCTATTATAGGC  691
                                                        
seq2  --------------------------------------------------  120

seq1  TGGGATGCCCGGCCCTCTATGTGAAACTTTCCAACCCAGGGGCTGGGCTT  741
                                                        
seq2  --------------------------------------------------  120

seq1  CCTCTCGCCCATCCGAGTGTGTGTGTGTGTGTGTGTCTCCCTCTCCCCTC  791
                                                        
seq2  --------------------------------------------------  120

seq1  TGTCTCTCTGTCTCTCTTTCTCTCTGTGTGTGCTTGAGTTCTCTTCCTCT  841
                                                        
seq2  --------------------------------------------------  120

seq1  TCCCCTTC  849
              
seq2  --------  120

seq1: chr4_26810776_26811887
seq2: B6Ng01-237B03.g_69_1166

seq1  GAATTCAATTTAATTTGCTGTTCTATCACAGAAGCCTACAAGAGAGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAATTTGCTGTTCTATCACAGAAGCCTACAAGAGAGCCCA  50

seq1  CCACAATATGTGAAATTCAAATTATGATTGCTGACAAAAGTCAATAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATATGTGAAATTCAAATTATGATTGCTGACAAAAGTCAATAAAAT  100

seq1  GTGTACAATTTAGAACGGATATGGTGCTACATGCTGACCTCGTCAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAATTTAGAACGGATATGGTGCTACATGCTGACCTCGTCAGAAAG  150

seq1  AGTATTTGCTATCTATACGCAATTCCTAGCATTTATTTTGAGTTCCAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGCTATCTATACGCAATTCCTAGCATTTATTTTGAGTTCCAATT  200

seq1  CAGAACACATGCACTTTTGAAAGACAACCTAGGCAAGCAACGTGTGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACATGCACTTTTGAAAGACAACCTAGGCAAGCAACGTGTGTAGA  250

seq1  GTACTTGCTTAGAAATAAACTACACAAAGCCTCAGGTTTGATTCATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGCTTAGAAATAAACTACACAAAGCCTCAGGTTTGATTCATAGCA  300

seq1  CCACATAAACCAAATTTTGTGGTCCATAACTATAACCCTAGTAGTTAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAAACCAAATTTTGTGGTCCATAACTATAACCCTAGTAGTTAGGC  350

seq1  AGCTGATATAACAGAAGTGTAAATTCAGGGTCATCTTTGGCTACATAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATATAACAGAAGTGTAAATTCAGGGTCATCTTTGGCTACATAGCA  400

seq1  AGTTCAATTTCAGCTCAAGAAATGTCAGATCCTGTCTCATAAAATAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATTTCAGCTCAAGAAATGTCAGATCCTGTCTCATAAAATAAAGC  450

seq1  TATCTTGGTAATTTCAGTTAGAGTAAAAGATTTTCATTCTAATTGCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGGTAATTTCAGTTAGAGTAAAAGATTTTCATTCTAATTGCTTTC  500

seq1  AGAGTAGAGTCATATAATCAATTACAATTAAATTTATGGACTCCAACGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGAGTCATATAATCAATTACAATTAAATTTATGGACTCCAACGAA  550

seq1  TGCTCTCCTGCAGCTTGTCCAGGTTGCACCACTGCATTAAAAACTGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCTGCAGCTTGTCCAGGTTGCACCACTGCATTAAAAACTGCTTT  600

seq1  CAAACAGCACAATTAGCTAAAGATATCATACTCACACTTTGTGCATCTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGCACAATTAGCTAAAGATATCATACTCACACTTTGTGCATCTCG  650

seq1  GGTTCTTTCTCTCGTTGTAACCGTGCATTCTTCAGCTGTAAATTCTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTCTCTCGTTGTAACCGTGCATTCTTCAGCTGTAAATTCTCTTC  700

seq1  TCACCACAAATAGACTCTCGGAACACATACAGCATTGCTGCTTGCTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACAAATAGACTCTCGGAACACATACAGCATTGCTGCTTGCTTTGT  750

seq1  AACTCTCCAGGCTTTCCAGAACTCATATGCAATATACCTTTCGTTGTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCAGGCTTTCCAGAACTCATATGCAATATACCTTTCGTTGTATT  800

seq1  GGCTTGTTTTTTAGGTTTTAATTCAATTAAAAGTAATAATATAAAATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTTTTTAGGTTTTAATTCAATTAAAAGTAATAATATAAAATTAA  850

seq1  TATTTTTGATCTATTGGAACACCTCAGATTAGAAATATTTTTGGGACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGATCTATTGGAACACCTCAGATTAGAAATATTTTTGGGACTTC  900

seq1  TTTGCTAGCATCTTTATGCATTCTGCCTATCCTACTCCAATCTTCATGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGCATCTTTATGCATTCTGCCTATCCTACTCCAATCTTCATGTA  950

seq1  GTACATGAAACCAGACCTTGAAAGAGGCCTTCATGCTATAAGCTCTGCAA  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTACATGAAACCAGACCTTGAAAGA-GCCTTCATGCTATAAGCTCTGCAA  999

seq1  ACTCTACGCAATCTCAATGAATGCATCTAGCAACTATACACAGCCAGACC  1050
      ||||||||| ||||| ||| ||||||||||| ||||||||||| |||| |
seq2  ACTCTACGC-ATCTC-ATG-ATGCATCTAGC-ACTATACACAG-CAGA-C  1043

seq1  CACTAACTAGTTCAGTCCCCCTTGTCCTTGCATCCTAAAGAATGTCTAAG  1100
      |||| ||||| |||||||||| ||| ||||||| ||||||||||||||  
seq2  CACT-ACTAG-TCAGTCCCCC-TGT-CTTGCAT-CTAAAGAATGTCTA--  1086

seq1  GCATCCCGCTTT  1112
      ||||||||||||
seq2  GCATCCCGCTTT  1098