BAC Information

Click to search

BAC

Clone NameB6Ng01-237C03
Chromosome4 (Build37)
Map Location 5,517,020 - 5,518,152
singlet/doubletsinglet
Overlap genenone
Upstream geneImpad1, LOC100039338
Downstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237C03.bB6Ng01-237C03.g
ACCGA048176GA048177
length1,1541,103
definitionB6Ng01-237C03.b B6Ng01-237C03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaaagtacccacgagctaaaggatcttcaaccctata
gtgacacattatgactaccagtacccctgagctctgactctagctgcata
ttgtatcaaaagatggctagtcgcatcactgaagagaggcccattggaaa
cgcgacttgtgtgcccgtacaggaacgcagcaaggggggaatatggtggg
tcta
gaattctctgtattgtgaagaaaacaatcacacactcacatatacacata
catacatacacacacactacacacaaacaccagcgttttactttactgta
tagtcaatataggacaatgaatgaatgaatgagtgaggcatagtaatagt
taaaatttactctatgaaatacttaatgaagtgatgtaatgaaactgtct
aaacattaatctgcattttctcatcaatgaaaaagtataattagatgcta
agatcccatccagtttcactgtctgtgacaatttacaatgttttcattct
gtattctcacagcttcatccaacatattcccaaatgttcatatgtagcaa
caataaaaatgaagttctccctggggacagtttttaagacaactgagcaa
agctttgttgtaagattttattacaatcatgagagatgcttggacaagtc
actgaaaatgtggcttcatgcaaagcacttacctttctgagccatacaag
gaaagcatggagaaatgccacttcctcggagtgaaaagaggcgtgggact
tgtgagtgatgaggattttcattcaaataattggccttactacacatagg
gtacaggttgtctcctaaatctggaaccttcaacactgagttaggtagag
tggcattagcatctaacatttttcttattgcatgttaactgcatatagct
ttgaagctgaacggtatatgtgctggggtctttaggaaaagacaagttat
taagcccctaagtattgtgtactatatcagattcgcattgttcctgttcc
ctcgtctctgacattttcaccgtccttactaaaggccatttcctctcaat
ctgtcaacaatggaaattgaaaacagctgctcaccaaccctgtggataat
gggtttctctgtgcacatcatgccagcaggtcttatagtcactgccatat
ttgagagtcagagagagatttaaagttaaagagctttagtagttatgaaa
tcacttctacagtagatgctatgctacaagatacactaatgagaatcact
ctatgttctgtagcagtagatgactacatgtgataataaagtgcattatt
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_5517020_5518152
seq2: B6Ng01-237C03.g_62_1164

seq1  GAATTCTCTGTATTGTGAAGAAAACAATCACACACTCACATATACACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTATTGTGAAGAAAACAATCACACACTCACATATACACATA  50

seq1  CATACATACACACACACTACACACAAACACCAGCGTTTTACTTTACTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACACACACACTACACACAAACACCAGCGTTTTACTTTACTGTA  100

seq1  TAGTCAATATAGGACAATGAATGAATGAATGAGTGAGGCATAGTAATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATATAGGACAATGAATGAATGAATGAGTGAGGCATAGTAATAGT  150

seq1  TAAAATTTACTCTATGAAATACTTAATGAAGTGATGTAATGAAACTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTACTCTATGAAATACTTAATGAAGTGATGTAATGAAACTGTCT  200

seq1  AAACATTAATCTGCATTTTCTCATCAATGAAAAAGTATAATTAGATGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTAATCTGCATTTTCTCATCAATGAAAAAGTATAATTAGATGCTA  250

seq1  AGATCCCATCCAGTTTCACTGTCTGTGACAATTTACAATGTTTTCATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCATCCAGTTTCACTGTCTGTGACAATTTACAATGTTTTCATTCT  300

seq1  GTATTCTCACAGCTTCATCCAACATATTCCCAAATGTTCATATGTAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTCACAGCTTCATCCAACATATTCCCAAATGTTCATATGTAGCAA  350

seq1  CAATAAAAATGAAGTTCTCCCTGGGGACAGTTTTTAAGACAACTGAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAATGAAGTTCTCCCTGGGGACAGTTTTTAAGACAACTGAGCAA  400

seq1  AGCTTTGTTGTAAGATTTTATTACAATCATGAGAGATGCTTGGACAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTTGTAAGATTTTATTACAATCATGAGAGATGCTTGGACAAGTC  450

seq1  ACTGAAAATGTGGCTTCATGCAAAGCACTTACCTTTCTGAGCCATACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAATGTGGCTTCATGCAAAGCACTTACCTTTCTGAGCCATACAAG  500

seq1  GAAAGCATGGAGAAATGCCACTTCCTCGGAGTGAAAAGAGGCGTGGGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATGGAGAAATGCCACTTCCTCGGAGTGAAAAGAGGCGTGGGACT  550

seq1  TGTGAGTGATGAGGATTTTCATTCAAATAATTGGCCTTACTACACATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGATGAGGATTTTCATTCAAATAATTGGCCTTACTACACATAGG  600

seq1  GTACAGGTTGTCTCCTAAATCTGGAACCTTCAACACTGAGTTAGGTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGTTGTCTCCTAAATCTGGAACCTTCAACACTGAGTTAGGTAGAG  650

seq1  TGGCATTAGCATCTAACATTTTTCTTATTGCATGTTAACTGCATATAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTAGCATCTAACATTTTTCTTATTGCATGTTAACTGCATATAGCT  700

seq1  TTGAAGCTGAACGGTATATGTGCTGGGGTCTTTAGGAAAAGACAAGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTGAACGGTATATGTGCTGGGGTCTTTAGGAAAAGACAAGTTAT  750

seq1  TAAGCCCCTAAGTATTGTGTACTATATCAGATTCGCATTGTTCCTGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCCTAAGTATTGTGTACTATATCAGATTCGCATTGTTCCTGTTCC  800

seq1  CTCGTCTCTGACATTTTCACCGTCCTTACTAAAGGCCATTTCCTCTCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCTCTGACATTTTCACCGTCCTTACTAAAGGCCATTTCCTCTCAAT  850

seq1  CTGTCAACAATGGAAATTGAAAACAGCTGCTCACCAACCCTGTGGATAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAACAATGGAAATTGAAAACAGCTGCTCACCAACCCTGTGGATAAT  900

seq1  -GGTTTCTCTGTGCACATCATGCCAGCAGGTCTTATAGGTCACTGCCAAT  949
       |||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  GGGTTTCTCTGTGCACATCATGCCAGCAGGTCTTATA-GTCACTGCC-AT  948

seq1  ATTTGAGAGGTCAGAGAGAAGAATTTTAAAGTTAAAAGAAGCTTTAGTAG  999
      |||||||| ||||||||| |||  ||||||||||||   |||||||||||
seq2  ATTTGAGA-GTCAGAGAG-AGA--TTTAAAGTTAAA--GAGCTTTAGTAG  992

seq1  TTATGAAATCCACCTTCTACAAGGTAAGATGGCTAATGGCTACAAAGATA  1049
      ||||||||||   ||||||||  || |||| ||||   ||||| ||||||
seq2  TTATGAAATC--ACTTCTACA--GT-AGAT-GCTA--TGCTAC-AAGATA  1033

seq1  CAACTAAATTGGAGAAATCACTTCTAATGTTCTGTAGCAAAGTAGAGTGA  1099
      | |||||    ||| |||||| ||| ||||||||||||  |||||| |||
seq2  C-ACTAA---TGAG-AATCAC-TCT-ATGTTCTGTAGC--AGTAGA-TGA  1073

seq1  CTACCATTGGTGATAATAAAGTGCATATATTGAA  1133
      ||| |||  ||||||||||||||||| |||||||
seq2  CTA-CAT--GTGATAATAAAGTGCAT-TATTGAA  1103