BAC Information

Click to search

BAC

Clone NameB6Ng01-237K09
Chromosome4 (Build37)
Map Location 8,414,573 - 8,501,070
singlet/doubletdoublet
Overlap geneRab2
Upstream geneCar8, LOC100039494, LOC100039505, LOC100039478
Downstream geneEG666752, LOC666760, Chd7, LOC666782, LOC100039584, 4933402J24Rik, Asph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237K09.bB6Ng01-237K09.g
ACCGA048548GA048549
length1,1231,092
definitionB6Ng01-237K09.b B6Ng01-237K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,414,573 - 8,415,656)(8,499,987 - 8,501,070)
sequence
gaattccatcctcttggggactctgtcagcaaaaggtatttttcttttct
tttccttagttcccatgagtatcagaaggaagttctcaactcagctcttt
tggatttctgagtaactttacacttaactttttccttatgattttattct
tatttcctttgcaaacaaattaagtagccactatgttttgaactgcatga
aatatcaacaaactttggcagaaaacatggttggacttctaactcatgct
ctaagaactgtatcaagtattgctgtttgggacctgccaaggctgtccat
cttcctgttgcaaagacagcatttccaatcacccttctgggtttcagtgt
ctgaatgaaagtcacagggctcaggtgcactgactccattctcttagtga
ggaatggagcctggcccagtcaacacaaaatcaaagcatcatagtcccca
agttgccagtcgattgggtaacaggaatacagggagtctcactgaagtca
taaggttagatttggaagttccaataaattaatgagaaaataacacctcc
accatacctcactcatactttgaatatttattcaccagatggatagtcct
gctatttcagaagagtgtggaacctttagttggggctgtgcaggacttgg
caaccatgaactgtaaagtaggatgggtacctaagggtatggtaagggca
gcacccatgcacatacaaggctctgttttggatccctaataccacaggga
ggaggggaaatgattactgcatagagtctcactatgtgacacagttccta
cgcactgctctgagaagcctactgtattagtcagggttctctagagtcac
agaacttatggataatttctaaatagtaaaggaatttattgatgacttac
agtcggcagcccaattcccaacaatgggttcagtcgcagctgtgaatggg
aagtccaagatctagcagttactcagtctcacgcagcaagcagcgatgag
cagagcagagctagactcccttctcatgtcctatattgtctccagcaaag
tgtagccagataaagggtgtgtccacccccaccttatccaaatgaagcat
aggccagaattaagggtgtgttc

gaattctcttcagagccaaggtgggaaactacagcaacggcccctggggc
ggggacaggggaggggcgagggggcttgagacccagtggcggccccttta
tgagctgatgccaaagccctctcctcggccggccgccgtggatccctctg
cctgggaggaagagccccaagctctgggcttgccaagcgccttactgtcc
cagagcccggggaggcacgggggtaggggtgggaagcgggcggtgccagc
gggatgggtccgccagagcgcagggtgggcccagggtgaggggcaggtcg
ggaggttcaggattggtgggcctgggaaggagggagggtcgcccctatga
gtaccctacaagctgatgcaggcgacagccccaattttaatttttaataa
agtactctttgtactaataacccataaacgctaaagctcttaaactggcc
cgttttaagcctgtagggggtttgaaagctgctgcattatggtattcact
gtaacttcacctctatgcatctaaaaaaattcactaaaacaatttttaaa
ataggaaaaataggttactgagtatattgtaagagggttcataagggtgg
gcagtaattagaataatgtttacaaatgctaataatgtccttattctggg
ttcatattagaaaacagcatttaaaaccatatagattacatgtggcgtta
gctcactaaatgggaagtgatagaaatagggttattattaagaggcttcc
agtgatcaggactgaatcaaacttaaaataatacactctcaggatcacta
actacacaaataacagtgatatttttacttttcaccacatttactcctta
aaaatatagacttggtgattattttttcttaaaaatacttttttaggggc
tgggagacacggtttccatgggttgagagcatttcgctgtcttacagatg
accttggggtttggttccagcgcccacaatgcagtttcacaatttctagg
gcctccaatgccctattctgccttccatcgggccctgtacccatgtggta
tatatagtcctattgccgacacccactgaatgcataaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_8414573_8415656
seq2: B6Ng01-237K09.b_49_1171

seq1  GAATTCCATCCTCTTGGGGACTCTGTCAGCAAAAGGTATTTTTCTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCTCTTGGGGACTCTGTCAGCAAAAGGTATTTTTCTTTTCT  50

seq1  TTTCCTTAGTTCCCATGAGTATCAGAAGGAAGTTCTCAACTCAGCTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAGTTCCCATGAGTATCAGAAGGAAGTTCTCAACTCAGCTCTTT  100

seq1  TGGATTTCTGAGTAACTTTACACTTAACTTTTTCCTTATGATTTTATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTGAGTAACTTTACACTTAACTTTTTCCTTATGATTTTATTCT  150

seq1  TATTTCCTTTGCAAACAAATTAAGTAGCCACTATGTTTTGAACTGCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTTTGCAAACAAATTAAGTAGCCACTATGTTTTGAACTGCATGA  200

seq1  AATATCAACAAACTTTGGCAGAAAACATGGTTGGACTTCTAACTCATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAACAAACTTTGGCAGAAAACATGGTTGGACTTCTAACTCATGCT  250

seq1  CTAAGAACTGTATCAAGTATTGCTGTTTGGGACCTGCCAAGGCTGTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAACTGTATCAAGTATTGCTGTTTGGGACCTGCCAAGGCTGTCCAT  300

seq1  CTTCCTGTTGCAAAGACAGCATTTCCAATCACCCTTCTGGGTTTCAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTTGCAAAGACAGCATTTCCAATCACCCTTCTGGGTTTCAGTGT  350

seq1  CTGAATGAAAGTCACAGGGCTCAGGTGCACTGACTCCATTCTCTTAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGAAAGTCACAGGGCTCAGGTGCACTGACTCCATTCTCTTAGTGA  400

seq1  GGAATGGAGCCTGGCCCAGTCAACACAAAATCAAAGCATCATAGTCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGAGCCTGGCCCAGTCAACACAAAATCAAAGCATCATAGTCCCCA  450

seq1  AGTTGCCAGTCGATTGGGTAACAGGAATACAGGGAGTCTCACTGAAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCAGTCGATTGGGTAACAGGAATACAGGGAGTCTCACTGAAGTCA  500

seq1  TAAGGTTAGATTTGGAAGTTCCAATAAATTAATGAGAAAATAACACCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTAGATTTGGAAGTTCCAATAAATTAATGAGAAAATAACACCTCC  550

seq1  ACCATACCTCACTCATACTTTGAATATTTATTCACCAGATGGATAGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACCTCACTCATACTTTGAATATTTATTCACCAGATGGATAGTCCT  600

seq1  GCTATTTCAGAAGAGTGTGGAACCTTTAGTTGGGGCTGTGCAGGACTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCAGAAGAGTGTGGAACCTTTAGTTGGGGCTGTGCAGGACTTGG  650

seq1  CAACCATGAACTGTAAAGTAGGATGGGTACCTAAGGGTATGGTAAGGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATGAACTGTAAAGTAGGATGGGTACCTAAGGGTATGGTAAGGGCA  700

seq1  GCACCCATGCACATACAAGGCTCTGTTTTGGATCCCTAATACCACAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCATGCACATACAAGGCTCTGTTTTGGATCCCTAATACCACAGGGA  750

seq1  GGAGGGGAAATGATTACTGCATAGAGTCTCACTATGTGACACAGTTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAAATGATTACTGCATAGAGTCTCACTATGTGACACAGTTCCTA  800

seq1  CGCACTGCTCTGAGAAGCCTACTGTATTAGTCAGGGTTCTCTAGAGTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTGCTCTGAGAAGCCTACTGTATTAGTCAGGGTTCTCTAGAGTCAC  850

seq1  AGAACTTATGGATAATTTCTAAATAGTAAAGGAATTTATTGATGACTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTATGGATAATTTCTAAATAGTAAAGGAATTTATTGATGACTTAC  900

seq1  AGTCGGCAGCCCAATTCCCAACAAT-GGTTCAGTCGCAGCTGTGAAT-GG  948
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  AGTCGGCAGCCCAATTCCCAACAATGGGTTCAGTCGCAGCTGTGAATGGG  950

seq1  AAGTCCAAGGATCTAGCAGTTACTCAGTCTCACGCAGCAAGCAGGCGAAG  998
      |||||||| |||||||||||||||||||||||||||||||||| ||| | 
seq2  AAGTCCAA-GATCTAGCAGTTACTCAGTCTCACGCAGCAAGCA-GCG-AT  997

seq1  GAGCAAGAGCAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCT  1048
      |||| ||||| ||||||||||||||||||    |||||| ||||||||||
seq2  GAGC-AGAGC-AGAGCTAGACTCCCTTCT---CATGTCC-TATATTGTCT  1041

seq1  CCAGCAAAAGGTGTAGCCCAGATTAAAGGTGTGTTC--------------  1084
      ||||||||  |||||| |||||| || |||||| ||              
seq2  CCAGCAAA--GTGTAG-CCAGATAAAGGGTGTG-TCCACCCCCACCTTAT  1087

seq1  ------------------------------------  1084
                                          
seq2  CCAAATGAAGCATAGGCCAGAATTAAGGGTGTGTTC  1123


seq1: chr4_8499987_8501070
seq2: B6Ng01-237K09.g_66_1157 (reverse)

seq1  CATTTTTATGTA-TCTGTGTGTGTTTGC-ATAAGACTATATATACCACAT  48
      |||||||||| | || ||| ||||  || ||| |||||||||||||||||
seq2  CATTTTTATGCATTCAGTGGGTGTCGGCAATAGGACTATATATACCACAT  50

seq1  GTGTACAGGGGCCCGTGG-AGGCAGAATAGGGCATTGGAAGCCCTAGAAT  97
      | |||||||| ||  ||| |||||||||||||||||||| ||||||||| 
seq2  GGGTACAGGGCCCGATGGAAGGCAGAATAGGGCATTGGAGGCCCTAGAAA  100

seq1  TTGTG-AACTGCCATGTGGGCGCTGGGAACCAAA-CCCAAGGTCATCTGT  145
      ||||| ||||||  |||||||||| ||||||||| |||||||||||||||
seq2  TTGTGAAACTGCATTGTGGGCGCT-GGAACCAAACCCCAAGGTCATCTGT  149

seq1  AAGAACAGCG-AATGCTCTCAA-CCATGG-AACCGTGTCT-CCAGCCCCT  191
      ||| |||||| ||||||||||| |||||| |||||||||| |||||||||
seq2  AAG-ACAGCGAAATGCTCTCAACCCATGGAAACCGTGTCTCCCAGCCCCT  198

seq1  AAAAATGTATTTTTAAG-AAAAATAATCACCAAGTCTATATTTTTAAGGA  240
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAAAGTATTTTTAAGAAAAAATAATCACCAAGTCTATATTTTTAAGGA  248

seq1  GTAAATGTGGTGAAAAGTAAAAATATCACTGTTATTTGTGTAGTTAGTGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTGGTGAAAAGTAAAAATATCACTGTTATTTGTGTAGTTAGTGA  298

seq1  TCCTGAGAGTGTATTATTTTAAGTTTGATTCAGTCCTGATCACTGGAAGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAGTGTATTATTTTAAGTTTGATTCAGTCCTGATCACTGGAAGC  348

seq1  CTCTTAATAATAACCCTATTTCTATCACTTCCCATTTAGTGAGCTAACGC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATAATAACCCTATTTCTATCACTTCCCATTTAGTGAGCTAACGC  398

seq1  CACATGTAATCTATATGGTTTTAAATGCTGTTTTCTAATATGAACCCAGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAATCTATATGGTTTTAAATGCTGTTTTCTAATATGAACCCAGA  448

seq1  ATAAGGACATTATTAGCATTTGTAAACATTATTCTAATTACTGCCCACCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGACATTATTAGCATTTGTAAACATTATTCTAATTACTGCCCACCC  498

seq1  TTATGAACCCTCTTACAATATACTCAGTAACCTATTTTTCCTATTTTAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAACCCTCTTACAATATACTCAGTAACCTATTTTTCCTATTTTAAA  548

seq1  AATTGTTTTAGTGAATTTTTTTAGATGCATAGAGGTGAAGTTACAGTGAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTAGTGAATTTTTTTAGATGCATAGAGGTGAAGTTACAGTGAA  598

seq1  TACCATAATGCAGCAGCTTTCAAACCCCCTACAGGCTTAAAACGGGCCAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAATGCAGCAGCTTTCAAACCCCCTACAGGCTTAAAACGGGCCAG  648

seq1  TTTAAGAGCTTTAGCGTTTATGGGTTATTAGTACAAAGAGTACTTTATTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGCTTTAGCGTTTATGGGTTATTAGTACAAAGAGTACTTTATTA  698

seq1  AAAATTAAAATTGGGGCTGTCGCCTGCATCAGCTTGTAGGGTACTCATAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAAATTGGGGCTGTCGCCTGCATCAGCTTGTAGGGTACTCATAG  748

seq1  GGGCGACCCTCCCTCCTTCCCAGGCCCACCAATCCTGAACCTCCCGACCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGACCCTCCCTCCTTCCCAGGCCCACCAATCCTGAACCTCCCGACCT  798

seq1  GCCCCTCACCCTGGGCCCACCCTGCGCTCTGGCGGACCCATCCCGCTGGC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCACCCTGGGCCCACCCTGCGCTCTGGCGGACCCATCCCGCTGGC  848

seq1  ACCGCCCGCTTCCCACCCCTACCCCCGTGCCTCCCCGGGCTCTGGGACAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCCGCTTCCCACCCCTACCCCCGTGCCTCCCCGGGCTCTGGGACAG  898

seq1  TAAGGCGCTTGGCAAGCCCAGAGCTTGGGGCTCTTCCTCCCAGGCAGAGG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCGCTTGGCAAGCCCAGAGCTTGGGGCTCTTCCTCCCAGGCAGAGG  948

seq1  GATCCACGGCGGCCGGCCGAGGAGAGGGCTTTGGCATCAGCTCATAAAGG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACGGCGGCCGGCCGAGGAGAGGGCTTTGGCATCAGCTCATAAAGG  998

seq1  GGCCGCCACTGGGTCTCAAGCCCCCTCGCCCCTCCCCTGTCCCCGCCCCA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCCACTGGGTCTCAAGCCCCCTCGCCCCTCCCCTGTCCCCGCCCCA  1048

seq1  GGGGCCGTTGCTGTAGTTTCCCACCTTGGCTCTGAAGAGAATTC  1084
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCGTTGCTGTAGTTTCCCACCTTGGCTCTGAAGAGAATTC  1092


| Home | SequenceCutter | Blast | Download |