BAC Information

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BAC

Clone NameB6Ng01-237K14
Chromosome4 (Build37)
Map Location 89,342,927 - 89,492,464
singlet/doubletdoublet
Overlap geneDmrta1
Upstream geneLOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785
Downstream geneZfp352, LOC619842, LOC435792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237K14.bB6Ng01-237K14.g
ACCGA048558GA048559
length1,185982
definitionB6Ng01-237K14.b B6Ng01-237K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,342,927 - 89,344,109)(89,491,861 - 89,492,464)
sequence
gaattccaaaaaacaaaggaacactgaagagtagtccattatgtatgtga
accacatttttgttatccattcatcagctgaaggacagtcagactgtttc
catttcctagctttggttaataaaatgtcagtgaacatggttgagcaagt
atctcagggctggtgtcttttaggtgtaagccaaggattggtataaatag
gccatgaagtagatttatttttagtttcttgagaattctctatattgatt
tccatagtggctgtaccatctaactaacagcagtgaaagagtgaaagaga
atttccactttctccacatcctccctggcattttttgttagttgttttct
tcgtctttgtcattctgacttgatattttataaagaaaagaggtttactc
aaataagtttcagaggacaaatgtctaagctcagctagccctacgagttc
gggtttcaccacagatactacatgtgttgggagaacatggtgagattatg
gcaggaagatactgactcacaggcaggtgtgtgctttctcagcaggccac
tgttatgaggactaactgaggcccagagagaactacattaattctttaca
aagttgttgctcagagtaacctagctatcttcccctgtgttccataaaaa
gaagaaggtctcaccatcttgcaatactgccatactggtgaccaagtttc
cagaatatgaatctgtaggggtcatgtctaaaccttcttatggttttagt
tatcaaagatagaaaaaaatgtggagttcattctcaggagcaaagccttg
tggcttttgaattaactacttgaaactcaagttcttcacaatgaatttag
tattaatagtgttttgattaccaagtaaggaaattataccatttccctcc
ttgtttgttagacatttctcaaactaatgagaatgttgaagctatgtagc
attcaagaagatgaatgattcatcttggacccaaatggcagcttatacat
ttcttagcttattttcattctgtttataacaactgtttcttgttaaaaaa
catgattaaagatattgattaattgtaattcttatcacagacaaactact
aactacacagccttgcttcaacttcaatacgcaagggtgctaatgtggat
tctcttggtaacttcagagggctctctctcagttt
gaattcacctaagtcttaaaaaaacaaacataatctcagggttacctaca
gtacagactaaataggcaatgacctaccaccacccaagtgatcaggtaat
gcccagatttccatccagttttatttttcttttccagggattattatctg
cagaaatctctctggaataagaattctcacatcaattaaagtagaggaga
gatgatgtcagtggtagactgagtcctccggagagttccttggtaccagg
cccagtttttattttcattttatgctctaaagctacaaggtggcctgagc
aagcaaaccaaattttatgaagtgtaggtggcagtcagaaggttgttagg
ggcgacaacccattaatttaagctacttctccaggtcatagctaaggaag
ccatgtttggcagacaggcagtataagcagagctttaagtaaatcactaa
ataagtcaataaatcagtatctagtaattggtctttctttttcctaattt
aatggcagttctagtttgttgtctgttgctgtgagaaaaaaaatgaccaa
accaacataggtaggaaatagtccaatgcaacttacaggttaccatttat
catcaagggaagttaaggcaggaattcaagatgcgaactgggggacagga
gctgaagcagagaccacaaagcaatgctctgcactagcttactctaggct
caccttcagctacttttcttgtacaaccctggcttccctgtctaggaatg
gtacttcacagggcaatctaatagaggcaggtcttcaactgatgtgctat
cttcccaaatgtgtcaagttgacaactgaagctattacattccatcccat
gtaaactttaacataaacacagcactgcaaaccatagcctttccttcttt
tattcccaaaatatcatgttaataataaaatataaatgttaaaaatcctt
agtctttatattatgtaaacattttaaaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_89342927_89344109
seq2: B6Ng01-237K14.b_50_1234

seq1  GAATTCCAAAAAACAAAGGAACACTGAAGAGTAGTCCATTATGTATGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAAACAAAGGAACACTGAAGAGTAGTCCATTATGTATGTGA  50

seq1  ACCACATTTTTGTTATCCATTCATCAGCTGAAGGACAGTCAGACTGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTTTTGTTATCCATTCATCAGCTGAAGGACAGTCAGACTGTTTC  100

seq1  CATTTCCTAGCTTTGGTTAATAAAATGTCAGTGAACATGGTTGAGCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTAGCTTTGGTTAATAAAATGTCAGTGAACATGGTTGAGCAAGT  150

seq1  ATCTCAGGGCTGGTGTCTTTTAGGTGTAAGCCAAGGATTGGTATAAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGGCTGGTGTCTTTTAGGTGTAAGCCAAGGATTGGTATAAATAG  200

seq1  GCCATGAAGTAGATTTATTTTTAGTTTCTTGAGAATTCTCTATATTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAAGTAGATTTATTTTTAGTTTCTTGAGAATTCTCTATATTGATT  250

seq1  TCCATAGTGGCTGTACCATCTAACTAACAGCAGTGAAAGAGTGAAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGTGGCTGTACCATCTAACTAACAGCAGTGAAAGAGTGAAAGAGA  300

seq1  ATTTCCACTTTCTCCACATCCTCCCTGGCATTTTTTGTTAGTTGTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACTTTCTCCACATCCTCCCTGGCATTTTTTGTTAGTTGTTTTCT  350

seq1  TCGTCTTTGTCATTCTGACTTGATATTTTATAAAGAAAAGAGGTTTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTTTGTCATTCTGACTTGATATTTTATAAAGAAAAGAGGTTTACTC  400

seq1  AAATAAGTTTCAGAGGACAAATGTCTAAGCTCAGCTAGCCCTACGAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTTTCAGAGGACAAATGTCTAAGCTCAGCTAGCCCTACGAGTTC  450

seq1  GGGTTTCACCACAGATACTACATGTGTTGGGAGAACATGGTGAGATTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCACCACAGATACTACATGTGTTGGGAGAACATGGTGAGATTATG  500

seq1  GCAGGAAGATACTGACTCACAGGCAGGTGTGTGCTTTCTCAGCAGGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGATACTGACTCACAGGCAGGTGTGTGCTTTCTCAGCAGGCCAC  550

seq1  TGTTATGAGGACTAACTGAGGCCCAGAGAGAACTACATTAATTCTTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGAGGACTAACTGAGGCCCAGAGAGAACTACATTAATTCTTTACA  600

seq1  AAGTTGTTGCTCAGAGTAACCTAGCTATCTTCCCCTGTGTTCCATAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTGCTCAGAGTAACCTAGCTATCTTCCCCTGTGTTCCATAAAAA  650

seq1  GAAGAAGGTCTCACCATCTTGCAATACTGCCATACTGGTGACCAAGTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGTCTCACCATCTTGCAATACTGCCATACTGGTGACCAAGTTTC  700

seq1  CAGAATATGAATCTGTAGGGGTCATGTCTAAACCTTCTTATGGTTTTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATGAATCTGTAGGGGTCATGTCTAAACCTTCTTATGGTTTTAGT  750

seq1  TATCAAAGATAGAAAAAAATGTGGAGTTCATTCTCAGGAGCAAAGCCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGATAGAAAAAAATGTGGAGTTCATTCTCAGGAGCAAAGCCTTG  800

seq1  TGGCTTTTGAATTAACTACTTGAAACTCAAGTTCTTCACAATGAATTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTGAATTAACTACTTGAAACTCAAGTTCTTCACAATGAATTTAG  850

seq1  TATTAATAGTGTTTTGATTACCAAGTAAGGAAATTATACCATTTCCCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATAGTGTTTTGATTACCAAGTAAGGAAATTATACCATTTCCCTCC  900

seq1  TTGTTTGTTAGACATTTCTCAAACTAATGAGAATGTTGAAGCTATGTAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTAGACATTTCTCAAACTAATGAGAATGTTGAAGCTATGTAGC  950

seq1  ATTCAAGAAGATGAATGATTCATCTTGGACCCAAATGGCAGGCTTATACA  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTCAAGAAGATGAATGATTCATCTTGGACCCAAATGGCA-GCTTATACA  999

seq1  TTTCTTAGGCTTATTTTCATTCTGTTTATAAC-ACTGTTTCTTGTT-AAA  1048
      ||||||| |||||||||||||||||||||||| ||||||||||||| |||
seq2  TTTCTTA-GCTTATTTTCATTCTGTTTATAACAACTGTTTCTTGTTAAAA  1048

seq1  AACATGAATACAGATATTGAATTAATTGTAAT--CTATCAACAGACAAAA  1096
      ||||||| || |||||||| ||||||||||||   |||| |||||| |||
seq2  AACATGATTAAAGATATTG-ATTAATTGTAATTCTTATC-ACAGAC-AAA  1095

seq1  CTACTAACTACACAG-CTTGCTCCAAACTCCATACCGCAA-GGTGCT-AT  1143
      ||||||||||||||| |||||| |||  || ||| ||||| |||||| ||
seq2  CTACTAACTACACAGCCTTGCTTCAACTTCAATA-CGCAAGGGTGCTAAT  1144

seq1  GTTGAATTTCTCTTGTAAACTTCAGAGG---CTCTCTCAGTTT  1183
      || ||  ||||||||  |||||||||||   ||||||||||||
seq2  GTGGA--TTCTCTTGGTAACTTCAGAGGGCTCTCTCTCAGTTT  1185

seq1: chr4_89491861_89492464
seq2: B6Ng01-237K14.g_66_669 (reverse)

seq1  GATGATAAATGGTAACCTGTAAGTTGCATTGGACTATTTCCTACCTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAAATGGTAACCTGTAAGTTGCATTGGACTATTTCCTACCTATGT  50

seq1  TGGTTTGGTCATTTTTTTTCTCACAGCAACAGACAACAAACTAGAACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGTCATTTTTTTTCTCACAGCAACAGACAACAAACTAGAACTGC  100

seq1  CATTAAATTAGGAAAAAGAAAGACCAATTACTAGATACTGATTTATTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATTAGGAAAAAGAAAGACCAATTACTAGATACTGATTTATTGAC  150

seq1  TTATTTAGTGATTTACTTAAAGCTCTGCTTATACTGCCTGTCTGCCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGTGATTTACTTAAAGCTCTGCTTATACTGCCTGTCTGCCAAAC  200

seq1  ATGGCTTCCTTAGCTATGACCTGGAGAAGTAGCTTAAATTAATGGGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCCTTAGCTATGACCTGGAGAAGTAGCTTAAATTAATGGGTTGT  250

seq1  CGCCCCTAACAACCTTCTGACTGCCACCTACACTTCATAAAATTTGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCTAACAACCTTCTGACTGCCACCTACACTTCATAAAATTTGGTTT  300

seq1  GCTTGCTCAGGCCACCTTGTAGCTTTAGAGCATAAAATGAAAATAAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTCAGGCCACCTTGTAGCTTTAGAGCATAAAATGAAAATAAAAAC  350

seq1  TGGGCCTGGTACCAAGGAACTCTCCGGAGGACTCAGTCTACCACTGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGGTACCAAGGAACTCTCCGGAGGACTCAGTCTACCACTGACAT  400

seq1  CATCTCTCCTCTACTTTAATTGATGTGAGAATTCTTATTCCAGAGAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCTCTACTTTAATTGATGTGAGAATTCTTATTCCAGAGAGATT  450

seq1  TCTGCAGATAATAATCCCTGGAAAAGAAAAATAAAACTGGATGGAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGATAATAATCCCTGGAAAAGAAAAATAAAACTGGATGGAAATCT  500

seq1  GGGCATTACCTGATCACTTGGGTGGTGGTAGGTCATTGCCTATTTAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTACCTGATCACTTGGGTGGTGGTAGGTCATTGCCTATTTAGTCT  550

seq1  GTACTGTAGGTAACCCTGAGATTATGTTTGTTTTTTTAAGACTTAGGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTAGGTAACCCTGAGATTATGTTTGTTTTTTTAAGACTTAGGTGA  600

seq1  ATTC  604
      ||||
seq2  ATTC  604