BAC Information

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BAC

Clone NameB6Ng01-237N22
Chromosome4 (Build37)
Map Location 106,918,293 - 107,045,211
singlet/doubletdoublet
Overlap geneLrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48
Upstream geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840
Downstream geneGlis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237N22.bB6Ng01-237N22.g
ACCGA048716GA048717
length7101,103
definitionB6Ng01-237N22.b B6Ng01-237N22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,918,293 - 106,918,995)(107,044,095 - 107,045,211)
sequence
gaattcattaactccacaaaccaattaaataaagactagttacgcttttc
ttcctgttttatgagttttatattttctgttattgctttctcttttatag
tatacatcttgtttggcctctcttttttttggggggggggttctctgtag
ccctggatgtactggaactcactctgtagagcaggctggcctcacactca
gatccacctacctctgcctgagtactaggattaaaggcgtgctgttggct
tcattttataggttgtatttattattcatctgaacggtaaactggtgggt
tggggaatgtggctcagagagaacactatcctagtattattaggtcctgg
attggatcttcagtatcacacacacaaaaaatgaattaatgcaaaactgc
cttttaatcataaaaaagttcaggtggtacattataaaattaagtctaca
atattgattacaaatgattttcaaattgtgtgtacaaagaaaggttcgta
gtatataaaacatgtaggcatccacactgccagtttgacaaactggaaag
ccacagagatgtaaatgttcaaagtatctctggaatagagaaaaaaaagt
ggttgggctctgggaaaggaaaacaggaggtttgaactgtttgccagggt
cattttttacttttttaaaagtagtagaatgttctcaaaagttttcttta
aattgataat
gaattctaagacaacctggtctacacagagaaaactggtctcaaaatata
aaaataaaaataaagtaaactaaaaatgctgactcgagcgccctcacctg
gccctacatagagaaggcccaggagcagaggagagagggaaagagcacac
aggccataagccaaggggttctgaacagggctgactagacaaagagacct
agccaccaagaaagcactaagaaagcaaagaaaaataatatgtattacaa
tacccagtaaggacttaaaattttacacactatttttaaatatagaattc
tttaaatactaaagagttaagagatgttacagcaaaaactataagtagat
ggaatacatgaataagcgataaataatcagaaaggccgtaagtgaccact
cgggaatctggaaaggcagagaaggaacaagccaagtgggcactgttctg
gaatccaggctgcgcccaagggaaagcccagctttctgtaattattataa
aaccacagactttgttatttggggaaagaaaaaataagtcaacagccaca
aatgcagtggcacatgcttgcaatcccagtgcccaggaggctgaggcagg
agtgttataaccttgaggtcagtccagatgtagtcccctaccttacaaga
attatctaataattcatttactaactcacagctttaacactagctgtgaa
ctaataaaaggttttacatttttcattgtggcaaaatataaaataaaatt
tacctttgaatcatttttaaatgcacagttctgagacaggaggacagtca
cactgctggcaagttgccccaggccctcctgacccctttgtgctgcagcc
cctggcactaacagtccactctgtctttatgacttgacctctttatatac
ccagcttccccacagcagactcataacgactatcatgaaaggtctaaatg
tctcttcaaagagaacaccaaagtattgtaagtacactgaatgataacag
atacagctatgcaacacatttcttaagtctgcctagtagatggatatttt
ggtttgattgaagacaaatctgcaatctagctaggctaactttctactca
cta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_106918293_106918995
seq2: B6Ng01-237N22.b_46_755

seq1  GAATTCATTAACTCCACAAACCAATTAAATAAAGACTAGTTACGCTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAACTCCACAAACCAATTAAATAAAGACTAGTTACGCTTTTC  50

seq1  TTCCTGTTTTATGAGTTTTATATTTTCTGTTATTGCTTTCTCTTTTATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTTATGAGTTTTATATTTTCTGTTATTGCTTTCTCTTTTATAG  100

seq1  TATACATCTTGTTTGGCCTCTCTTTTTTTTGGGGGGGGGGTTCTCTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATCTTGTTTGGCCTCTCTTTTTTTTGGGGGGGGGGTTCTCTGTAG  150

seq1  CCCTGGATGTACTGGAACTCACTCTGTAGAGCAGGCTGGCCTCACACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATGTACTGGAACTCACTCTGTAGAGCAGGCTGGCCTCACACTCA  200

seq1  GATCCACCTACCTCTGCCTGAGTACTAGGATTAAAGGCGTGCTGTTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACCTACCTCTGCCTGAGTACTAGGATTAAAGGCGTGCTGTTGGCT  250

seq1  TCATTTTATAGGTTGTATTTATTATTCATCTGAACGGTAAACTGGTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATAGGTTGTATTTATTATTCATCTGAACGGTAAACTGGTGGGT  300

seq1  TGGGGAATGTGGCTCAGAGAGAACACTATCCTAGTATTATTAGGTCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAATGTGGCTCAGAGAGAACACTATCCTAGTATTATTAGGTCCTGG  350

seq1  ATTGGATCTTCAGTATCACACACACAAAAAATGAATTAATGCAAAACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATCTTCAGTATCACACACACAAAAAATGAATTAATGCAAAACTGC  400

seq1  CTTTTAATCATAAAAAAGTTCAGGTGGTACATTATAAAATTAAGTCTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATCATAAAAAAGTTCAGGTGGTACATTATAAAATTAAGTCTACA  450

seq1  ATATTGATTACAAATGATTTTCAAATTGTGTGTACAAAGAAAGGTTCGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATTACAAATGATTTTCAAATTGTGTGTACAAAGAAAGGTTCGTA  500

seq1  GTATATAAAACATGTAGGCATCCACACTGCCAGTTTGACAAACTGGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAAAACATGTAGGCATCCACACTGCCAGTTTGACAAACTGGAAAG  550

seq1  CCACAGAGATGTAAATGTTCAAAGTATCTCTGGAAT-GAGAAAAAAAAGT  599
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCACAGAGATGTAAATGTTCAAAGTATCTCTGGAATAGAGAAAAAAAAGT  600

seq1  GGTTGGGCTCTGGGAAAGG-AAACAGGAGGTTTGAACTGTTTGCCAGGGT  648
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGTTGGGCTCTGGGAAAGGAAAACAGGAGGTTTGAACTGTTTGCCAGGGT  650

seq1  CA-TTTTTACTTTTTTAAAAGTAGTAG-ATGTTCTC-AAAGTTTTCTT--  693
      || |||||||||||||||||||||||| |||||||| |||||||||||  
seq2  CATTTTTTACTTTTTTAAAAGTAGTAGAATGTTCTCAAAAGTTTTCTTTA  700

seq1  AAATGATAAT  703
      || |||||||
seq2  AATTGATAAT  710

seq1: chr4_107044095_107045211
seq2: B6Ng01-237N22.g_65_1167 (reverse)

seq1  TAGTGAGTTAGACAGTTAGCCTAGGTTAGATGGCAGATTTTGTCTCAAAC  50
      ||||||| |||| |||||||||| | ||||| ||||| |||||||  || 
seq2  TAGTGAG-TAGAAAGTTAGCCTA-GCTAGATTGCAGA-TTTGTCTTCAAT  47

seq1  AAAACAAAAATAATTCATCTTACTTAGGGCAGACTTTAAGAAATGTG-TG  99
       |||| ||||| || |||| ||||   ||||||| |||||||||||| ||
seq2  CAAACCAAAAT-ATCCATC-TACT--AGGCAGAC-TTAAGAAATGTGTTG  92

seq1  CATAGCTGTATTCTGTTATCCTTTCAGTTGTACTTACAATTACTTTGGTG  149
      |||||||||| |||||||| | ||||| ||||||||||| ||||||||||
seq2  CATAGCTGTA-TCTGTTAT-CATTCAG-TGTACTTACAA-TACTTTGGTG  138

seq1  TTTCTCTTTTGAAGAGACATTTAGACCTTTCATGATAGTCGTTTATGAGT  199
       ||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  -TTCTC-TTTGAAGAGACATTTAGACCTTTCATGATAGTCG-TTATGAGT  185

seq1  CTGCTGTGGGGAAGCTGGGTATATAAAGAGGTCAAGTCATAAAGACAGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGGGGAAGCTGGGTATATAAAGAGGTCAAGTCATAAAGACAGAG  235

seq1  TGGACTGTTAGTGCCAGGGGCTGCAGCACAAAGGGGTCAGGAGGGCCTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGTTAGTGCCAGGGGCTGCAGCACAAAGGGGTCAGGAGGGCCTGG  285

seq1  GGCAACTTGCCAGCAGTGTGACTGTCCTCCTGTCTCAGAACTGTGCATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTTGCCAGCAGTGTGACTGTCCTCCTGTCTCAGAACTGTGCATTT  335

seq1  AAAAATGATTCAAAGGTAAATTTTATTTTATATTTTGCCACAATGAAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGATTCAAAGGTAAATTTTATTTTATATTTTGCCACAATGAAAAA  385

seq1  TGTAAAACCTTTTATTAGTTCACAGCTAGTGTTAAAGCTGTGAGTTAGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACCTTTTATTAGTTCACAGCTAGTGTTAAAGCTGTGAGTTAGTA  435

seq1  AATGAATTATTAGATAATTCTTGTAAGGTAGGGGACTACATCTGGACTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTATTAGATAATTCTTGTAAGGTAGGGGACTACATCTGGACTGA  485

seq1  CCTCAAGGTTATAACACTCCTGCCTCAGCCTCCTGGGCACTGGGATTGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGGTTATAACACTCCTGCCTCAGCCTCCTGGGCACTGGGATTGCA  535

seq1  AGCATGTGCCACTGCATTTGTGGCTGTTGACTTATTTTTTCTTTCCCCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGCCACTGCATTTGTGGCTGTTGACTTATTTTTTCTTTCCCCAA  585

seq1  ATAACAAAGTCTGTGGTTTTATAATAATTACAGAAAGCTGGGCTTTCCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAGTCTGTGGTTTTATAATAATTACAGAAAGCTGGGCTTTCCCT  635

seq1  TGGGCGCAGCCTGGATTCCAGAACAGTGCCCACTTGGCTTGTTCCTTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGCAGCCTGGATTCCAGAACAGTGCCCACTTGGCTTGTTCCTTCTC  685

seq1  TGCCTTTCCAGATTCCCGAGTGGTCACTTACGGCCTTTCTGATTATTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCCAGATTCCCGAGTGGTCACTTACGGCCTTTCTGATTATTTAT  735

seq1  CGCTTATTCATGTATTCCATCTACTTATAGTTTTTGCTGTAACATCTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTATTCATGTATTCCATCTACTTATAGTTTTTGCTGTAACATCTCTT  785

seq1  AACTCTTTAGTATTTAAAGAATTCTATATTTAAAAATAGTGTGTAAAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTAGTATTTAAAGAATTCTATATTTAAAAATAGTGTGTAAAATT  835

seq1  TTAAGTCCTTACTGGGTATTGTAATACATATTATTTTTCTTTGCTTTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCCTTACTGGGTATTGTAATACATATTATTTTTCTTTGCTTTCTT  885

seq1  AGTGCTTTCTTGGTGGCTAGGTCTCTTTGTCTAGTCAGCCCTGTTCAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTCTTGGTGGCTAGGTCTCTTTGTCTAGTCAGCCCTGTTCAGAA  935

seq1  CCCCTTGGCTTATGGCCTGTGTGCTCTTTCCCTCTCTCCTCTGCTCCTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGGCTTATGGCCTGTGTGCTCTTTCCCTCTCTCCTCTGCTCCTGG  985

seq1  GCCTTCTCTATGTAGGGCCAGGTGAGGGCGCTCGAGTCAGCATTTTTAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTCTATGTAGGGCCAGGTGAGGGCGCTCGAGTCAGCATTTTTAGT  1035

seq1  TTACTTTATTTTTATTTTTATATTTTGAGACCAGTTTTCTCTGTGTAGAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTATTTTTATTTTTATATTTTGAGACCAGTTTTCTCTGTGTAGAC  1085

seq1  CAGGTTGTCTTAGAATTC  1117
      ||||||||||||||||||
seq2  CAGGTTGTCTTAGAATTC  1103