BAC Information

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BAC

Clone NameB6Ng01-238A22
Chromosome4 (Build37)
Map Location 9,257,824 - 9,258,924
singlet/doubletsinglet
Overlap gene4933402J24Rik
Upstream geneLOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782, LOC100039584
Downstream geneAsph, Gdf6, 4930448K20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238A22.bB6Ng01-238A22.g
ACCGA048850GA048851
length1,1801,095
definitionB6Ng01-238A22.b B6Ng01-238A22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccccatttttaatggggttatttgaatt
tctggagtccaacttcttgagctctttgtatatgttggatattaatcccc
tatcagatttaggattggtaaaaatcctttcccaatctgttggtggcctt
tttcctcttattgaaagtgtcttttgccttacagaagctttgcattttca
tgaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctgtttaggaatttttcccctgtgcccatatcttcgaggcttttccccac
tttctcctctattaatttcaatgtctctggtcttatgtggaggtctttga
tccacttagacttgagctttgtacaaggagataagaatggatcaattcgc
attcttctacatgataactgccacttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggtttatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactataccagtaccatgcagtttttatcacaattgc
tctgtagtacagttttaggtccggcatggtgattccaccagaggtacttt
tatccttgagaagagtttttgctatcctacgttttttgttattccagatg
aatctgctgattgccctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcagaatagccattt
tgactatattaatcctgccaatccacaagcatgagagatctttccatctt
gagatcttcttcagtttctttctgcagagacttgaagttcttaccacaca
gatctttcacttcctagttagagtcataccaaggttattttatattattt
gtgactatgtgaaggtgtgtctctattcttgtagcctatttttcctttgt
gtaaagaagccattgatatttgagtatttatatcatttattatactgttg
cactgtacaggttagagttctctgtaagttttggggtccaattatataca
ttcattcatctgccaaagtggatattggaactctcttccagtgtatcctg
atacaaaatgactcggccgagagactctca
gaattcaaatgctgacatatcacccaccatctatacagaaaacatttgtc
cagaaagactcaacctgaacaggtggtagcctccagaacccactctagtt
caagatgaacaagttcgggaacatcaagggaaaacaagaagacaatccaa
gcagaacacactatggggaatatattgaaaaggttgtgctaggcagggtt
tttgttcaacttccctttagctgtatccacacagctatgtagatgctcgt
gcagcatacaccaagcagctctacaaaatgttgacaattttttgaataaa
atgctaactgtgttgttgtactgtcctttcaacttttctgtttgcctgca
cattttcttaataaaaaagttggcaagaataaaccttgctgtctgcctag
ggattatatgatcttttctgtcccttcccatagtgatattcagacgctga
agttcaaatcgtggctctgatatttattagctgtgtcctctgggtcttag
cttttctcatgtataaagatgaaagctttagaagagctctaaaattctgt
atatcttaaggtcaccggagaaattgatttgaaatccctgggtaacccat
tcacattatgaatagccctttgtgacagtacattcttgcttccaatctgt
atctttcaaatagtaatttaataacttccttctttccaacccaaaaagca
aaggaggaagatgagcaagtcttcttcgaatgcttgagaatcagtcttcc
ctccctgctgtctgcttctctcctgagtcagttgttcgcacccagccaca
tcagtgtggcatctcagttctgtgtgccagccccatttgccttttcactg
gccacggtcagccatattttactttccaccgtatcttttccaaagtgtgt
cagaccaaagtttagtgatcctagctcatttacttccattgctctgaact
gcccactatatgttctctagtatagtcatatttgttatgatttcatgcat
cctaatttgtttttcaaagcatgaatgtgcagacttacactgagatgtgt
tgggagtctgattgaaagtaatactaaggctcacggatactaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_9257824_9258924
seq2: B6Ng01-238A22.g_66_1160

seq1  GAATTCAAATGCTGACATATCACCCACCATCTATACAGAAAACATTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGCTGACATATCACCCACCATCTATACAGAAAACATTTGTC  50

seq1  CAGAAAGACTCAACCTGAACAGGTGGTAGCCTCCAGAACCCACTCTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGACTCAACCTGAACAGGTGGTAGCCTCCAGAACCCACTCTAGTT  100

seq1  CAAGATGAACAAGTTCGGGAACATCAAGGGAAAACAAGAAGACAATCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGAACAAGTTCGGGAACATCAAGGGAAAACAAGAAGACAATCCAA  150

seq1  GCAGAACACACTATGGGGAATATATTGAAAAGGTTGTGCTAGGCAGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACACACTATGGGGAATATATTGAAAAGGTTGTGCTAGGCAGGGTT  200

seq1  TTTGTTCAACTTCCCTTTAGCTGTATCCACACAGCTATGTAGATGCTCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAACTTCCCTTTAGCTGTATCCACACAGCTATGTAGATGCTCGT  250

seq1  GCAGCATACACCAAGCAGCTCTACAAAATGTTGACAATTTTTTGAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATACACCAAGCAGCTCTACAAAATGTTGACAATTTTTTGAATAAA  300

seq1  ATGCTAACTGTGTTGTTGTACTGTCCTTTCAACTTTTCTGTTTGCCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAACTGTGTTGTTGTACTGTCCTTTCAACTTTTCTGTTTGCCTGCA  350

seq1  CATTTTCTTAATAAAAAAGTTGGCAAGAATAAACCTTGCTGTCTGCCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTAATAAAAAAGTTGGCAAGAATAAACCTTGCTGTCTGCCTAG  400

seq1  GGATTATATGATCTTTTCTGTCCCTTCCCATAGTGATATTCAGACGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATATGATCTTTTCTGTCCCTTCCCATAGTGATATTCAGACGCTGA  450

seq1  AGTTCAAATCGTGGCTCTGATATTTATTAGCTGTGTCCTCTGGGTCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAATCGTGGCTCTGATATTTATTAGCTGTGTCCTCTGGGTCTTAG  500

seq1  CTTTTCTCATGTATAAAGATGAAAGCTTTAGAAGAGCTCTAAAATTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCATGTATAAAGATGAAAGCTTTAGAAGAGCTCTAAAATTCTGT  550

seq1  ATATCTTAAGGTCACCGGAGAAATTGATTTGAAATCCCTGGGTAACCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTAAGGTCACCGGAGAAATTGATTTGAAATCCCTGGGTAACCCAT  600

seq1  TCACATTATGAATAGCCCTTTGTGACAGTACATTCTTGCTTCCAATCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTATGAATAGCCCTTTGTGACAGTACATTCTTGCTTCCAATCTGT  650

seq1  ATCTTTCAAATAGTAATTTAATAACTTCCTTCTTTCCAACCCAAAAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCAAATAGTAATTTAATAACTTCCTTCTTTCCAACCCAAAAAGCA  700

seq1  AAGGAGGAAGATGAGCAAGTCTTCTTCGAATGCTTGAGAATCAGTCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAAGATGAGCAAGTCTTCTTCGAATGCTTGAGAATCAGTCTTCC  750

seq1  CTCCCTGCTGTCTGCTTCTCTCCTGAGTCAGTTGTTCGCACCCAGCCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCTGTCTGCTTCTCTCCTGAGTCAGTTGTTCGCACCCAGCCACA  800

seq1  TCAGTGTGGCATCTCAGTTCTGTGTGCCAGCCCCATTTGCCTTTTCACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGGCATCTCAGTTCTGTGTGCCAGCCCCATTTGCCTTTTCACTG  850

seq1  GCCACGGTCAGCCATATTTTACTTTCCACCGTATCTTTTCCAAAGTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGGTCAGCCATATTTTACTTTCCACCGTATCTTTTCCAAAGTGTGT  900

seq1  CAGACCAAAGTTTAGTTGATCCTAGCTCATTTACTTCCATTGCTCTGAAC  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGACCAAAGTTTAG-TGATCCTAGCTCATTTACTTCCATTGCTCTGAAC  949

seq1  TGCCCACTATATGTTCTCTAGTTATAGGTTCATATTTGTTTATGATTTCA  1000
      ||||||||||||||||||||| |||||  ||||||||| |||||||||||
seq2  TGCCCACTATATGTTCTCTAG-TATAG--TCATATTTG-TTATGATTTCA  995

seq1  TGCATCCTAATTTGTTTTTTCCAAAGCATGATTGTGCAGACTTACACTGA  1050
      |||||||||||||||||||  |||||||||| ||||||||||||||||||
seq2  TGCATCCTAATTTGTTTTT--CAAAGCATGAATGTGCAGACTTACACTGA  1043

seq1  AGAATGTGTT--GAGTCTGTATGACAGTAATACTAGAGC-CACAGATACT  1097
         |||||||  |||||||  ||| ||||||||||  || ||| ||||||
seq2  --GATGTGTTGGGAGTCTGATTGAAAGTAATACTAAGGCTCACGGATACT  1091

seq1  AAAG  1101
      ||||
seq2  AAAG  1095