BAC Information

Click to search

BAC

Clone NameB6Ng01-238F09
Chromosome4 (Build37)
Map Location 35,498,733 - 35,645,778
singlet/doubletdoublet
Overlap genenone
Upstream gene2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream geneLingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238F09.bB6Ng01-238F09.g
ACCGA049059GA049060
length8271,113
definitionB6Ng01-238F09.b B6Ng01-238F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,498,733 - 35,499,550)(35,644,679 - 35,645,778)
sequence
gaattctctggtatatcaataaaaatatgattctagtaacaatgggagtg
ttttttctttacattgctaggctgaggttgcttctctgttgtacttggat
tctgtgatccctggctggagcctgacacttgccatagtaagtttacatca
aggaatctgaaatttctgtaactaatcagggactctccagaggctcagtt
gttaaaccttctccagtacaccatcagctccggggatacctccccctctt
cacaacagtcttttcaagtctctgagtttctgtccctccccactggaaat
ccagaatcgtcaagtctgaaaaggccaggaaagagttcttggtgggcctc
tctaattctgagcaaggggtttacagtttgtctttgtgtgtgtcctcacc
taaaacatactgggtactttattaaatcgtctcaggaattctgggaaact
atacttttggggcacaggctctagcttagaggataaggttctattatctt
aagttcagtggctttaaaaaacaaaacaaaacagggaaagagttttgtgt
gcttagttctgctagctaataggattaaggaacatgacacctcccccacc
tctgaattatgtcatttgtctaaaattttataatgctggttaggtggcaa
gactgtattcaaactaaacagtgtactgttgtttgaataagaatggccca
cttagactcacatatttgaatgttaagtcaccagggaagtggcactactt
ggaaaggattagaagagtttaggagatgtggcctttgaaaggaagtatgt
cagttaatggggttggggggtgggcct

gaattcagttgcctgtgcttcagtggccccgagagtcctccttggactgg
cataagaacttgctgatattatgcaggactagatttaatacaaagcacat
ttttttgcctagagtcctctgaaacgaataaatgggttcagagagatgga
aaataactggaaactgtctcctggctggtgaggagagataacagtagctc
actgtttaggcagttctgtgtcttcccagaacagcacttgtaaactgaga
ggtacaaacctttaaagtaatgtcttgagtgaataagcagatgtaggaga
cttgaagtgcagaagaaaatcaatatagcattgtgaatgctacactgcct
ctaaccgcagcactcatggtttgggttccaaaccataaatagacacattc
tgtattaaaaacaatttcaatttttgttatatttattttctttcgaatag
tgccaatattggcccagattttcacagaaaattcaggaaactacttaatt
ccttctcgactttgattggctatcaccagtcagcttttgccaccttctgt
tttaagaaatgtagaaaatttaatttcatactatccaagcagaatctcct
tccccatgtagtatctgctgagtgtacataatcaaaataacttaattgaa
cattggtaaataaaatcttcttcaaattgtgcttcaaatgtgaatacaca
tcagtcctttgggttccgtgctgctcaccacctgtctctcattccagcat
ccaaactatgtggtttggagatggtcttcagtgtccacctaaccaggcag
gggtctggcaataaggacctactttctttaacgatccactctcagggagt
cagaatagttaagtatttaaaaggatacggatctagagtgagagcccctc
aaggcttccatcttcttggaattcattttttctttgtgggcaaaatattt
aacatctctgcatcccctgtccttaaattgagtctaacactacctacctc
cacaacggtgctgtgaggcttactgggaacagcaatgtaagacacttgtg
tacactgcaaaccctgcataaaggtgctatggatttagaatgggaacaaa
gcagtggactgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35498733_35499550
seq2: B6Ng01-238F09.b_49_875

seq1  GAATTCTCTGGTATATCAATAAAAATATGATTCTAGTAACAATGGGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTATATCAATAAAAATATGATTCTAGTAACAATGGGAGTG  50

seq1  TTTTTTCTTTACATTGCTAGGCTGAGGTTGCTTCTCTGTTGTACTTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTACATTGCTAGGCTGAGGTTGCTTCTCTGTTGTACTTGGAT  100

seq1  TCTGTGATCCCTGGCTGGAGCCTGACACTTGCCATAGTAAGTTTACATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATCCCTGGCTGGAGCCTGACACTTGCCATAGTAAGTTTACATCA  150

seq1  AGGAATCTGAAATTTCTGTAACTAATCAGGGACTCTCCAGAGGCTCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTGAAATTTCTGTAACTAATCAGGGACTCTCCAGAGGCTCAGTT  200

seq1  GTTAAACCTTCTCCAGTACACCATCAGCTCCGGGGATACCTCCCCCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACCTTCTCCAGTACACCATCAGCTCCGGGGATACCTCCCCCTCTT  250

seq1  CACAACAGTCTTTTCAAGTCTCTGAGTTTCTGTCCCTCCCCACTGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAGTCTTTTCAAGTCTCTGAGTTTCTGTCCCTCCCCACTGGAAAT  300

seq1  CCAGAATCGTCAAGTCTGAAAAGGCCAGGAAAGAGTTCTTGGTGGGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCGTCAAGTCTGAAAAGGCCAGGAAAGAGTTCTTGGTGGGCCTC  350

seq1  TCTAATTCTGAGCAAGGGGTTTACAGTTTGTCTTTGTGTGTGTCCTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCTGAGCAAGGGGTTTACAGTTTGTCTTTGTGTGTGTCCTCACC  400

seq1  TAAAACATACTGGGTACTTTATTAAATCGTCTCAGGAATTCTGGGAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATACTGGGTACTTTATTAAATCGTCTCAGGAATTCTGGGAAACT  450

seq1  ATACTTTTGGGGCACAGGCTCTAGCTTAGAGGATAAGGTTCTATTATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTGGGGCACAGGCTCTAGCTTAGAGGATAAGGTTCTATTATCTT  500

seq1  AAGTTCAGTGGCTTTAAAAAACAAAACAAAACAGGGAAAGAGTTTTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGTGGCTTTAAAAAACAAAACAAAACAGGGAAAGAGTTTTGTGT  550

seq1  GCTTAGTTCTGCTAGCTAATAGGATTAAGGAACATGACACCTCCCCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTTCTGCTAGCTAATAGGATTAAGGAACATGACACCTCCCCCACC  600

seq1  TCTGAATTATGTCATTTGTCTAAAATTTTATAATGCTGGTTAGGTGGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTATGTCATTTGTCTAAAATTTTATAATGCTGGTTAGGTGGCAA  650

seq1  GACTGTATTCAAACTAAACAGTGTACTGTTGTTTGAATAAGAATGGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTATTCAAACTAAACAGTGTACTGTTGTTTGAATAAGAATGGCCCA  700

seq1  CTTAGACTCACATATTTGAATGTTAAGTCACCA-GGAAGTGGCACTACTT  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTAGACTCACATATTTGAATGTTAAGTCACCAGGGAAGTGGCACTACTT  750

seq1  -GAAAGGATTAGAAGAG-TTAGGAGATGTGGCCTT--GAAGGAAGTATGT  795
       |||||||||||||||| |||||||||||||||||   ||||||||||||
seq2  GGAAAGGATTAGAAGAGTTTAGGAGATGTGGCCTTTGAAAGGAAGTATGT  800

seq1  CAG-TAATGGG---TGGGGGTGGGCTT  818
      ||| |||||||    |||||||||| |
seq2  CAGTTAATGGGGTTGGGGGGTGGGCCT  827


seq1: chr4_35644679_35645778
seq2: B6Ng01-238F09.g_67_1179 (reverse)

seq1  GACAGT-CACTGCTTTG-TCCCAATCTAAATCCCATAGCACCTTTATGGC  48
      |||||| |||||||||| ||||| ||||||| ||||||||||||||||  
seq2  GACAGTCCACTGCTTTGTTCCCATTCTAAAT-CCATAGCACCTTTATGCA  49

seq1  AGGTTTGCAGTTGTACAC-AGTGTCCTACA-TGCTGTTCCCAGTAAGCCT  96
       ||||||||| ||||||| |||||| |||| |||||||||||||||||||
seq2  GGGTTTGCAG-TGTACACAAGTGTCTTACATTGCTGTTCCCAGTAAGCCT  98

seq1  CACAGCACCGTTGT-GAGGTAGGTAGTGTTAGACTC-ATTTAA-GACA-G  142
      |||||||||||||| ||||||||||||||||||||| |||||| |||| |
seq2  CACAGCACCGTTGTGGAGGTAGGTAGTGTTAGACTCAATTTAAGGACAGG  148

seq1  GGATGCAGAGATGTTAAATATTTTGCCCACAAAG-AAAAATGAA-TCCA-  189
      |||||||||||||||||||||||||||||||||| ||||||||| |||| 
seq2  GGATGCAGAGATGTTAAATATTTTGCCCACAAAGAAAAAATGAATTCCAA  198

seq1  -GAGATGG-AGCCTTG-GGGGCTCTCACTCTAGATCCGTAT-CTTTTAAA  235
        |||||| ||||||| |||||||||||||||||||||||| ||||||||
seq2  GAAGATGGAAGCCTTGAGGGGCTCTCACTCTAGATCCGTATCCTTTTAAA  248

seq1  TACTTAACTATTCTGACTCCCTGAGAGTGGATCGTTAAAGAAAGTAGGTC  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAACTATTCTGACTCCCTGAGAGTGGATCGTTAAAGAAAGTAGGTC  298

seq1  CTTATTGCCAGACCCCTGCCTGGTTAGGTGGACACTGAAGACCATCTCCA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGCCAGACCCCTGCCTGGTTAGGTGGACACTGAAGACCATCTCCA  348

seq1  AACCACATAGTTTGGATGCTGGAATGAGAGACAGGTGGTGAGCAGCACGG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATAGTTTGGATGCTGGAATGAGAGACAGGTGGTGAGCAGCACGG  398

seq1  AACCCAAAGGACTGATGTGTATTCACATTTGAAGCACAATTTGAAGAAGA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAGGACTGATGTGTATTCACATTTGAAGCACAATTTGAAGAAGA  448

seq1  TTTTATTTACCAATGTTCAATTAAGTTATTTTGATTATGTACACTCAGCA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTACCAATGTTCAATTAAGTTATTTTGATTATGTACACTCAGCA  498

seq1  GATACTACATGGGGAAGGAGATTCTGCTTGGATAGTATGAAATTAAATTT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTACATGGGGAAGGAGATTCTGCTTGGATAGTATGAAATTAAATTT  548

seq1  TCTACATTTCTTAAAACAGAAGGTGGCAAAAGCTGACTGGTGATAGCCAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTTCTTAAAACAGAAGGTGGCAAAAGCTGACTGGTGATAGCCAA  598

seq1  TCAAAGTCGAGAAGGAATTAAGTAGTTTCCTGAATTTTCTGTGAAAATCT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCGAGAAGGAATTAAGTAGTTTCCTGAATTTTCTGTGAAAATCT  648

seq1  GGGCCAATATTGGCACTATTCGAAAGAAAATAAATATAACAAAAATTGAA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAATATTGGCACTATTCGAAAGAAAATAAATATAACAAAAATTGAA  698

seq1  ATTGTTTTTAATACAGAATGTGTCTATTTATGGTTTGGAACCCAAACCAT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTAATACAGAATGTGTCTATTTATGGTTTGGAACCCAAACCAT  748

seq1  GAGTGCTGCGGTTAGAGGCAGTGTAGCATTCACAATGCTATATTGATTTT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGCGGTTAGAGGCAGTGTAGCATTCACAATGCTATATTGATTTT  798

seq1  CTTCTGCACTTCAAGTCTCCTACATCTGCTTATTCACTCAAGACATTACT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCACTTCAAGTCTCCTACATCTGCTTATTCACTCAAGACATTACT  848

seq1  TTAAAGGTTTGTACCTCTCAGTTTACAAGTGCTGTTCTGGGAAGACACAG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTTTGTACCTCTCAGTTTACAAGTGCTGTTCTGGGAAGACACAG  898

seq1  AACTGCCTAAACAGTGAGCTACTGTTATCTCTCCTCACCAGCCAGGAGAC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCTAAACAGTGAGCTACTGTTATCTCTCCTCACCAGCCAGGAGAC  948

seq1  AGTTTCCAGTTATTTTCCATCTCTCTGAACCCATTTATTCGTTTCAGAGG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCAGTTATTTTCCATCTCTCTGAACCCATTTATTCGTTTCAGAGG  998

seq1  ACTCTAGGCAAAAAAATGTGCTTTGTATTAAATCTAGTCCTGCATAATAT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGGCAAAAAAATGTGCTTTGTATTAAATCTAGTCCTGCATAATAT  1048

seq1  CAGCAAGTTCTTATGCCAGTCCAAGGAGGACTCTCGGGGCCACTGAAGCA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTTCTTATGCCAGTCCAAGGAGGACTCTCGGGGCCACTGAAGCA  1098

seq1  CAGGCAACTGAATTC  1100
      |||||||||||||||
seq2  CAGGCAACTGAATTC  1113


| Home | SequenceCutter | Blast | Download |