BAC Information

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BAC

Clone NameB6Ng01-238I17
Chromosome4 (Build37)
Map Location 145,293,261 - 145,441,330
singlet/doubletdoublet
Overlap geneLOC100041379, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Upstream geneLOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC666349
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238I17.bB6Ng01-238I17.g
ACCGA049211GA049212
length1,1601,027
definitionB6Ng01-238I17.b B6Ng01-238I17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,440,191 - 145,441,330)(145,293,261 - 145,294,302)
sequence
gaattcttcacgcaaaagataaaaagcagcagaagaagacttgtccagta
tgattggtgttgagctctgtggcacatagtggatctgaaaataaccaggc
agaatctcttggtcatgtgacttgggcagaagcacagccttctttaccca
caaaattaggatgggctgggataaactttcctatttgaagttaaccctga
gcttcactgttcttactgattgttcttgtttttctgagacaagcttttct
tgaattgccctggctatcttagaacttgctcagaagaccaggctggcctc
aaactaagaaatccacctgcctctgcctcacagcattggcattaagtcat
ggaccactgctgcctggcattcatagattctaaaatcaagtttctaatca
ttaagatctgtagtcacaaagatcatttttgcctgaaagtaaccccagaa
aacccacactctaacaggtgtgatcgcgaggtttgctgttacgtatgtag
ctggctttgatgttctggcatgcaatggagtgctgcactagggcttcaag
atgcccgatggagtccttgactttccgcccataaacttccggtggttcga
gagaggatgattacagaaacatcagtcgcttctttctataaatgtttcat
aacgcaaatagaatgtgaagaattttttttatgtggtttttcgagacagg
gtttctctgtatagccctggctgtcctggaactcactttgtagaccaggc
tggccttgaactcagaaatctgtcttcctctgcgcccccccacccccacc
ccgattgctgggattaaaggcgtgcaccaccacatccggcaatgtgaaga
aatactaaaaatatcattcattaattattgaaaagttcagcctctggaaa
tggcgatatctctccttatactgccagcttaaaggagcattgagaaattg
tgaattataaaattggatcttggatggtggtagaaataatcgccatagaa
gtatttctctctgaacgtgtaaccattttcagctgtagcttttctgttac
agtggagcctgtctcaattcttgtgtagacagtgcagcctggctcccaca
ctttcacatatgccttacctatttatatccgtgggtctggaaaaaaaaca
ggtgacatca
gaattcatacagtagagaaaacttacaaaaatgcagtgaatgtgataaat
gctttactaataaaggcagactgagaattaatcagataatttatacattt
aaaaaaaccttacaagtattttgtatgtgataaatgcagtacccacaaca
tcagtctgacaaatcaacagatatttcaaacagtagagcaacattataaa
tgaaatgaatgagataatcctttaacaagaaatatcatcttaaaattcac
tggagaattcttccaaaagggaaacttttcaaatacattgacggtttgaa
tcctttattttggccaatctcttagaatgtaacagataatttatacaggc
aagaatcttaacaaatataatatatgctgaaatatctttgacttcatttc
agtgcagaaaaaatatgtaaaaaaattttttatgggaaaaatagttctcc
tggggaaatgtggcatatgttttacacgggtaatattcttttcaacagtc
agtgctctaaactagagaattattatgaatctgaaaacttttgaaaacct
tcatgcaatcttcaaatctaatgtcaactattatgctggcagtaactctg
aatatatgataatgaagaaacattttcattaaacttttacttgttcaccc
tcaaatattatatgatgaagtcaggtgtgaaagccagaagaatatgatgt
tgtgcaacaattcatggagatagaaatgatccattccagaaggaaactta
aagagtgtactatcgccttcaaaatgtctaataaaactggcagcattttg
tatatttaattcaaatgaagaaattgacacaattatacttgatagagtat
ttgacaaactgagccaccaagaatgcatgttcttaatcctatatacacct
acagatgtgaagtgtgctttgagttatccagtattcattattctatcacg
tcaatgtgacaatgatttattggtttcacgtttcagatagtgactgacta
tgagtccctatgctctgtcaacatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145440191_145441330
seq2: B6Ng01-238I17.b_45_1204 (reverse)

seq1  TGATGTCACCT-TGTTTTTTCCAGAACCACAGGGATATAAAAATAGTAA-  48
      ||||||||||| | ||||||||||| ||||  ||||||||| |  |||| 
seq2  TGATGTCACCTGTTTTTTTTCCAGACCCAC--GGATATAAATA-GGTAAG  47

seq1  GCATA-ATG-ACGTGTGGG-GC--AGCTGCCCTGTCCTAACACAGAAT--  91
      |||||  || | ||||||| ||   ||||| |||||   ||| |||||  
seq2  GCATATGTGAAAGTGTGGGAGCCAGGCTGCACTGTCTACACA-AGAATTG  96

seq1  GGACAGGCT-CACTATAACAGAAAATCTACAGCTGAAAATGGTTAACACA  140
       |||||||| |||| |||||||||| |||||||||||||||||| |||| 
seq2  AGACAGGCTCCACTGTAACAGAAAAGCTACAGCTGAAAATGGTT-ACAC-  144

seq1  TTTCAGAGAAGAACATAACTTTATGTCGATTTAATCTACCGCCATTCCAG  190
       ||||||| |||| |||  | |||| |||||   |||||| ||| |||| 
seq2  GTTCAGAG-AGAA-ATACTTCTATGGCGATTATTTCTACCACCA-TCCAA  191

seq1  GATTCTGATTTTATAATTCACAATTTCTCAATTGCTCCTTTTAAGCTGGC  240
      || ||  |||||||||||||||||||||||| |||||| |||||||||||
seq2  GA-TCCAATTTTATAATTCACAATTTCTCAA-TGCTCC-TTTAAGCTGGC  238

seq1  AGTATAAGGAGAGATATCGCCATTTCCAGAGGCTGAACTTTTCAATAATT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAGGAGAGATATCGCCATTTCCAGAGGCTGAACTTTTCAATAATT  288

seq1  AATGAATGTTATTTTTAGTATTTCTTCACATTGCTGGGCATGGTGGCACA  340
      |||||||| ||||||||||||||||||||||||| ||   ||||||  ||
seq2  AATGAATGATATTTTTAGTATTTCTTCACATTGCCGGATGTGGTGGTGCA  338

seq1  CACCTTTAATTCCAGCACTC--------------GGGAGGCAGAGGCAGG  376
      | |||||||| |||||| ||              |||  ||||||| || 
seq2  CGCCTTTAATCCCAGCAATCGGGGTGGGGGTGGGGGGGCGCAGAGGAAGA  388

seq1  CAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAA-  425
      ||||||||||||||| ||||||||||||||||||||||||||||||| | 
seq2  CAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGAC  438

seq1  --------CTATACAGAGAAACCCTGTCTCGAAAAAAACCACA-AAAATT  466
              |||||||||||||||||||||||  |||||||||| ||||  
seq2  AGCCAGGGCTATACAGAGAAACCCTGTCTCG--AAAAACCACATAAAAAA  486

seq1  TTTTCTTCACATTCAATTTGCATTATGAAACATTTATGGAAAGAAGCGAC  516
        |||||||||||| |||||| ||||||||||||||| ||||||||||||
seq2  AATTCTTCACATTCTATTTGCGTTATGAAACATTTATAGAAAGAAGCGAC  536

seq1  TGATGTTTCTGTAATCATCCTCTCTCGAACCACCGGAAGTTTATGGGCGG  566
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTCTGTAATCATCCTCTCTCGAACCACCGGAAGTTTATGGGCGG  586

seq1  AAAGTCAAGGACTCCATCAGGCATCTTGAAGCCCTAGTGCAGCACTCCAT  616
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAGTCAAGGACTCCATCGGGCATCTTGAAGCCCTAGTGCAGCACTCCAT  636

seq1  TGCATGCCAGAACATCAAAGCCAGCTACATTCGTAACAGCAAACCTCATG  666
      |||||||||||||||||||||||||||||| ||||||||||||||||  |
seq2  TGCATGCCAGAACATCAAAGCCAGCTACATACGTAACAGCAAACCTCGCG  686

seq1  ATCACACCTGTTAGAGTGTCGGTTTTCTGGGGTTACTCTCAGGCAAAAAT  716
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  ATCACACCTGTTAGAGTGTGGGTTTTCTGGGGTTACTTTCAGGCAAAAAT  736

seq1  GATCTTTGTGACTACAGATCTTAATGATTAGAAACTTGATTTTAGAATCT  766
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTGTGACTACAGATCTTAATGATTAGAAACTTGATTTTAGAATCT  786

seq1  ATGAATGCCAGGCAGCAGTGGTCCATGACTTAATGCCAATGCTGTGAGGC  816
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGCCAGGCAGCAGTGGTCCATGACTTAATGCCAATGCTGTGAGGC  836

seq1  AGAGGCAGGTGGATTTCTTAGTTTGAGGCCAGCCTGGTCTTCTGAGCAAG  866
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGTGGATTTCTTAGTTTGAGGCCAGCCTGGTCTTCTGAGCAAG  886

seq1  TTCTAATATAGCCAGGGCAATTCAAGAAAAGCTTGTCTCAGAAAAACAAG  916
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGATAGCCAGGGCAATTCAAGAAAAGCTTGTCTCAGAAAAACAAG  936

seq1  AACAATCAGTAAGAACAGTGAAGCTCAGGGTTAACTTCAGGTAGGAAAGT  966
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  AACAATCAGTAAGAACAGTGAAGCTCAGGGTTAACTTCAAATAGGAAAGT  986

seq1  TTATCCCAGCACATCTTAATTCTGTGGGTAAAGAAGGCTGTTCTTCTGCC  1016
      |||||||||| |||| ||||| ||||||||||||||||||| ||||||||
seq2  TTATCCCAGCCCATCCTAATTTTGTGGGTAAAGAAGGCTGTGCTTCTGCC  1036

seq1  CAAGTCACATGACCAAGAGATTCTGCCTGGTTATTTTCAGATCCACTATG  1066
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCACATGACCAAGAGATTCTGCCTGGTTATTTTCAGATCCACTATG  1086

seq1  TGCCACAGAGCCCGACACCAATCATACTCGACAAGTCTTCTTCTGCTGCT  1116
      ||||||||||| | |||||||||||||| |||||||||||||||||||||
seq2  TGCCACAGAGCTCAACACCAATCATACTGGACAAGTCTTCTTCTGCTGCT  1136

seq1  TTATTTCTTTTGCGTGAAGAATTC  1140
      || | |||||||||||||||||||
seq2  TTTTATCTTTTGCGTGAAGAATTC  1160

seq1: chr4_145293261_145294302
seq2: B6Ng01-238I17.g_68_1094

seq1  GAATTCATACAGTAGAGAAAACTTACAAAAATGCAGTGAATGTGATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGTAGAGAAAACTTACAAAAATGCAGTGAATGTGATAAAT  50

seq1  GCTTTACTAATAAAGGCAGACTGAGAATTAATCAGATAATTTATACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACTAATAAAGGCAGACTGAGAATTAATCAGATAATTTATACATTT  100

seq1  AAAAAAACCCTTACAAGTATTTTGTATGTGATAAATGCAGTACCCACAAC  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAA-CCTTACAAGTATTTTGTATGTGATAAATGCAGTACCCACAAC  149

seq1  ATCAGTCTGACAAATCAACAGATATTTCAAACAGTAGAGCAACATTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCTGACAAATCAACAGATATTTCAAACAGTAGAGCAACATTATAA  199

seq1  ATGAAATGAATGAGATAGTCCTTTAACAAGAAATATCATCTTAAAATTCA  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGAAATGAATGAGATAATCCTTTAACAAGAAATATCATCTTAAAATTCA  249

seq1  CTGGAGAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGACGGTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGACGGTTTGA  299

seq1  ATCCTTTATTTTGGCCTATCTCTTAGAATGTAATAGATAATTTATACAGT  350
      |||||||||||||||| |||||||||||||||| ||||||||||||||| 
seq2  ATCCTTTATTTTGGCCAATCTCTTAGAATGTAACAGATAATTTATACAGG  349

seq1  CAAGAATCTTAACAAATATAATATATGCTGAAATATCTTTGACTTCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATCTTAACAAATATAATATATGCTGAAATATCTTTGACTTCATTT  399

seq1  CAGTGCAGAAAAAATATGTAAAAAAATTTTTTTATGGGAAAAATAGTTCT  450
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGTGCAGAAAAAATATGTAAAAAAA-TTTTTTATGGGAAAAATAGTTCT  448

seq1  CCTGGGGAAATGTGGCATATGTTTTACACGGGTAATATTCTTTTCAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGAAATGTGGCATATGTTTTACACGGGTAATATTCTTTTCAACAG  498

seq1  TCAGTGCTCTAAACTAGAGAATTATTATGAATCTGAAAACTTTTGAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTCTAAACTAGAGAATTATTATGAATCTGAAAACTTTTGAAAAC  548

seq1  CTTCATGCAATGTTCAAATCTTAGATAATGTCAACTATTATGCTGGCAGT  600
      ||||||||||| ||||||||     |||||||||||||||||||||||||
seq2  CTTCATGCAATCTTCAAATC-----TAATGTCAACTATTATGCTGGCAGT  593

seq1  AACTCTGAATATATGATAGTGAAGAAACATTTTCATTAAACTTTTACTTG  650
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AACTCTGAATATATGATAATGAAGAAACATTTTCATTAAACTTTTACTTG  643

seq1  TTCACCCTCAAATATTATATGATGAAGTCAGGTGTGAAAGCCAGAAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCTCAAATATTATATGATGAAGTCAGGTGTGAAAGCCAGAAGAAT  693

seq1  ATGATGTTGTGCAACAATTCATGGAGATAGAAATGATCCATTCCAAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGATGTTGTGCAACAATTCATGGAGATAGAAATGATCCATTCCAGAAGG  743

seq1  AAACTAAATAAAGAGTGTACTATCGCCTTCAAAATGTCTAATAAAACTGG  800
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  AAACT---TAAAGAGTGTACTATCGCCTTCAAAATGTCTAATAAAACTGG  790

seq1  CAGCATTTTGTATATTTAATTCAAATGAGGAAATTGACACAGATTGTACT  850
      |||||||||||||||||||||||||||| |||||||||||| ||| ||||
seq2  CAGCATTTTGTATATTTAATTCAAATGAAGAAATTGACACA-ATTATACT  839

seq1  TGATAGTGTATTTGACAAACTGAGCCACCAAGACTGCATGTTCTTAATCC  900
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  TGATAGAGTATTTGACAAACTGAGCCACCAAGAATGCATGTTCTTAATCC  889

seq1  TATAATATGCCTACAGATATGAAGTGTGCTTTGAG-TATCCAGTATTCAT  949
      ||| |||  ||||||||| |||||||||||||||| ||||||||||||||
seq2  TAT-ATACACCTACAGATGTGAAGTGTGCTTTGAGTTATCCAGTATTCAT  938

seq1  TATTCTTATCACGTCAATGTGACAAATGATTTATTGGTTTCACGTTTCAG  999
      ||||| ||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TATTC-TATCACGTCAATGTGAC-AATGATTTATTGGTTTCACGTTTCA-  985

seq1  GATAGTGACTGACTATGAGTCCCTTATGCTCTGTCAACATCTC  1042
      ||||||||||||||||||||||| |||||||||||||||||||
seq2  GATAGTGACTGACTATGAGTCCC-TATGCTCTGTCAACATCTC  1027