BAC Information

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BAC

Clone NameB6Ng01-238K10
Chromosome4 (Build37)
Map Location 54,820,921 - 54,992,709
singlet/doubletdoublet
Overlap geneLOC384018, EG666920, Zfp462
Upstream geneTmem38b, LOC670124, LOC100041280, LOC666901, LOC100041303
Downstream geneLOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238K10.bB6Ng01-238K10.g
ACCGA049289GA049290
length1,155321
definitionB6Ng01-238K10.b B6Ng01-238K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,991,566 - 54,992,709)(54,820,921 - 54,821,241)
sequence
gaattcatttatacctgcatacatatatgcacatgcgtgtactttcagat
caacagaacacactcatctatcaagtgctataaaaacaaaagctgacttg
ttaggaaaaaaaacatgtttgataaagtacagtatattttccagttgtct
ttttctccactggggtttggtaaattaaacgttacaaattttcaaataga
agtaaaatgttaagaataaggagcaaatgaaaaagtggatcctgaaagtc
tgggagattgcctagacattggattgtagcgctaacggaagaacacaaca
cagggccatgcagattgtacgcggaggtaaacaatgataggctgttatgt
ttaaaaaaaaaaggtcaaaagcctaaagctaataacgttgcattacatgc
tcgtatagaaaactacttaatcttctgtctgagctgctctttagttaaat
ggggccgggattacagaacaagagtaaaggacctcaaagggaacattcca
aaaccttgtgcctggattttctcccactgctgtacatattaaaattctat
taaaccagctgctaataattttcaaatggctcattagttctacccatgac
cttgggccactaccaatttcaaaccttgtcttcaagtcttaatcaacagc
cttggatggagtcctcttctcgaaatagcaaatgcattgtgggctgcata
gatgctcttcagcatccgcggacttgtgtgatatggaacttaacctaaaa
actccagtcttctggaaagacactagagttccttctctaaagaaaggtaa
aaacgaaacttttctctcttgttaaaaaactaaaactaaaaacctttctt
ctttaaaaaaaaaaaaaaaggtctctttctctgtttagtacagaatgcct
agatgggtctttcaaggatactaggaaattctcttgtatgttgcttgatc
aacacgggaaattcatccaaagggaaaaagaaagaaaaaaaaaaattccc
aggaaaaatatacccttaagcttctttcagatggaatctggagcaacgtc
caccttttctattatattcaggccgtggagggaggaagacctccataagt
gattcatttgcagaatgcgatttattaagggacctgaagacgactcaggg
agaga

tcagttgtttagactattaaaaaagacttcaaaaaatagaaacacttgac
ccagtttttctttttaaatgttatcaaatttaattcatcacgttttagag
atggggctgggcagatagctcagttgatagaatgtttcctcagcataaat
gaagcccttggttttagccccataaactgagcatggtggcacacattcca
gcacaccagaggaagaataaagttcaagatcaccctcacatagataacaa
attcaaggctagcctggactccataagagcccatggacgggtagagggag
ggagaaatgtggggagggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_54991566_54992709
seq2: B6Ng01-238K10.b_47_1201 (reverse)

seq1  TCTCTCCCTGAGTCGTCTTCAGTCCCTTTAATAAATCGCA-TCTGCAAAT  49
      ||||||||||||||||||||||  || ||||||||||||| |||||||||
seq2  TCTCTCCCTGAGTCGTCTTCAGGTCCCTTAATAAATCGCATTCTGCAAAT  50

seq1  GAAATCACTTAT-GAGGTCTTCCTCCCTCCACGCCCTGATTATAATAGAA  98
      | |||||||||| |||||||||||||||||||| ||||| ||||||||||
seq2  G-AATCACTTATGGAGGTCTTCCTCCCTCCACGGCCTGAATATAATAGAA  99

seq1  AAGGT-GACGTTTGCT-CAGATT-CATCTGAAAG-AGCTT-AGGGTATA-  142
      ||||| |||| ||||| |||||| |||||||||| ||||| |||||||| 
seq2  AAGGTGGACG-TTGCTCCAGATTCCATCTGAAAGAAGCTTAAGGGTATAT  148

seq1  TTTTCCTGGAA---TTTTTTTTTCTTTCTTTTTCCCTTTGGATGAATTCC  189
      ||||||||| |   |||||||||||||||||||||||||||||||||| |
seq2  TTTTCCTGGGAATTTTTTTTTTTCTTTCTTTTTCCCTTTGGATGAATTTC  198

seq1  CGTTGTTGATCAAGC-ACATACAAGAGAATTTCCTAGTATCC-TGAAAGA  237
      |  |||||||||||| |||||||||||||||||||||||||| |||||||
seq2  CCGTGTTGATCAAGCAACATACAAGAGAATTTCCTAGTATCCTTGAAAGA  248

seq1  CCCATCTAGGCATTCTGTTACTAAACAGAGAAAGAGACC-TTTTTTTTTT  286
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  CCCATCTAGGCATTCTG-TACTAAACAGAGAAAGAGACCTTTTTTTTTTT  297

seq1  TTTTAAAGAAGAAAGGTTTTTAGTTTTAGTTTTTTAACAAGAGAGAAAAG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGAAGAAAGGTTTTTAGTTTTAGTTTTTTAACAAGAGAGAAAAG  347

seq1  TTTCGTTTTTACCTTTCTTTAGAGAAGGAACTCTAGTGTCTTTCCAGAAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTTTTTACCTTTCTTTAGAGAAGGAACTCTAGTGTCTTTCCAGAAG  397

seq1  ACTGGAGTTTTTAGGTTAAGTTCCATATCACACAAGTCCGCGGATGCTGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTTTTTAGGTTAAGTTCCATATCACACAAGTCCGCGGATGCTGA  447

seq1  AGAGCATCTATGCAGCCCACAATGCATTTGCTATTTCGAGAAGAGGACTC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCTATGCAGCCCACAATGCATTTGCTATTTCGAGAAGAGGACTC  497

seq1  CATCCAAGGCTGTTGATTAAGACTTGAAGACAAGGTTTGAAATTGGTAGT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGGCTGTTGATTAAGACTTGAAGACAAGGTTTGAAATTGGTAGT  547

seq1  GGCCCAAGGTCATGGGTAGAACTAATGAGCCATTTGAAAATTATTAGCAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAGGTCATGGGTAGAACTAATGAGCCATTTGAAAATTATTAGCAG  597

seq1  CTGGTTTAATAGAATTTTAATATGTACAGCAGTGGGAGAAAATCCAGGCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTAATAGAATTTTAATATGTACAGCAGTGGGAGAAAATCCAGGCA  647

seq1  CAAGGTTTTGGAATGTTCCCTTTGAGGTCCTTTACTCTTGTTCTGTAATC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTTGGAATGTTCCCTTTGAGGTCCTTTACTCTTGTTCTGTAATC  697

seq1  CCGGCCCCATTTAACTAAAGAGCAGCTCAGACAGAAGATTAAGTAGTTTT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCCCATTTAACTAAAGAGCAGCTCAGACAGAAGATTAAGTAGTTTT  747

seq1  CTATACGAGCATGTAATGCAACGTTATTAGCTTTAGGCTTTTGACCTTTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACGAGCATGTAATGCAACGTTATTAGCTTTAGGCTTTTGACCTTTT  797

seq1  TTTTTTAAACATAACAGCCTATCATTGTTTACCTCCGCGTACAATCTGCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAACATAACAGCCTATCATTGTTTACCTCCGCGTACAATCTGCA  847

seq1  TGGCCCTGTGTTGTGTTCTTCCGTTAGCGCTACAATCCAATGTCTAGGCA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGTGTTGTGTTCTTCCGTTAGCGCTACAATCCAATGTCTAGGCA  897

seq1  ATCTCCCAGACTTTCAGGATCCACTTTTTCATTTGCTCCTTATTCTTAAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCAGACTTTCAGGATCCACTTTTTCATTTGCTCCTTATTCTTAAC  947

seq1  ATTTTACTTCTATTTGAAAATTTGTAACGTTTAATTTACCAAACCCCAGT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTTCTATTTGAAAATTTGTAACGTTTAATTTACCAAACCCCAGT  997

seq1  GGAGAAAAAGACAACTGGAAAATATACTGTACTTTATCAAACATGTTTTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAAGACAACTGGAAAATATACTGTACTTTATCAAACATGTTTTT  1047

seq1  TTTCCTAACAAGTCAGCTTTTGTTTTTATAGCACTTGATAGATGAGTGTG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAACAAGTCAGCTTTTGTTTTTATAGCACTTGATAGATGAGTGTG  1097

seq1  TTCTGTTGATCTGAAAGTACACGCATGTGCATATATGTATGCAGGTATAA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGATCTGAAAGTACACGCATGTGCATATATGTATGCAGGTATAA  1147

seq1  ATGAATTC  1144
      ||||||||
seq2  ATGAATTC  1155


seq1: chr4_54820921_54821241
seq2: B6Ng01-238K10.g_75_395

seq1  TCAGTTGTTTAGACTATTAAAAAAGACTTCAAAAAATAGAAACACTTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTTTAGACTATTAAAAAAGACTTCAAAAAATAGAAACACTTGAC  50

seq1  CCAGTTTTTCTTTTTAAATGTTATCAAATTTAATTCATCACGTTTTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTTTCTTTTTAAATGTTATCAAATTTAATTCATCACGTTTTAGAG  100

seq1  ATGGGGCTGGGCAGATAGCTCAGTTGATAGAATGTTTCCTCAGCATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCTGGGCAGATAGCTCAGTTGATAGAATGTTTCCTCAGCATAAAT  150

seq1  GAAGCCCTTGGTTTTAGCCCCATAAACTGAGCATGGTGGCACACATTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTTGGTTTTAGCCCCATAAACTGAGCATGGTGGCACACATTCCA  200

seq1  GCACACCAGAGGAAGAATAAAGTTCAAGATCACCCTCACATAGATAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCAGAGGAAGAATAAAGTTCAAGATCACCCTCACATAGATAACAA  250

seq1  ATTCAAGGCTAGCCTGGACTCCATAAGAGCCCATGGACGGGTAGAGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGGCTAGCCTGGACTCCATAAGAGCCCATGGACGGGTAGAGGGAG  300

seq1  GGAGAAATGTGGGGAGGGAGA  321
      |||||||||||||||||||||
seq2  GGAGAAATGTGGGGAGGGAGA  321


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