BAC Information

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BAC

Clone NameB6Ng01-238K24
Chromosome4 (Build37)
Map Location 4,987,019 - 5,136,261
singlet/doubletdoublet
Overlap genenone
Upstream gene4833413O15Rik, Penk1, A830012C17Rik, LOC100039297, LOC622019, Impad1, LOC100039338
Downstream gene1700012H17Rik, LOC669309, 3110003A22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238K24.bB6Ng01-238K24.g
ACCGA049317GA049318
length5181,048
definitionB6Ng01-238K24.b B6Ng01-238K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,987,019 - 4,987,536)(5,135,208 - 5,136,261)
sequence
gaattcacctcttcagcagggtaattttaatttgcatttcaatggtggct
aataaggccaaacatttttcttcatttgttttattggccatttgtcttct
atctcttgagcactgtgtgttcatttcattggtccatttttaaataagga
tgttcaggtgcttttgttgttatttagtattttacattctttgtatatac
gaaatattaaaaatctgccaaatatcaaatgttagcagccttatttataa
tagccagaagtgggaaagaacccagatgtccctcaactgaggaatgcata
cagaaaatgcggtacatttacacaatggagtactactcagctattaaaat
gaatttatgaaattcttaaccaaatggatggatctggagggtatcattct
aagtgaggtaaccaagtcacaaaagaacacacatgatatacactcactga
taagtggatattagcccagatgcgtagaatccttcttagaagggggaaca
aaatacccatggaaggag

gaattcttgtacctatcaaggcagtcaattttcttcaaaaatttaaatgc
acttacaatagttttctataaagaaggaaaaaaaaaactttcatgaaaaa
tagtggggggaacatatgaactggttctgtagataaaggcatcttagtta
attccaacacactaagttgaactgtagagtgcacacagaagaaggggtgg
tccattgcacaagttgtcctctgatctgcacaggaacacagtcattcaga
catgcactttccaccatgtattcatgcgtgcaaatatacaaataaacatg
aagaaggtgtatatttggtggagaacatttaagtaaactctgtaaggata
aactttgtaaggacccttggctttgcttctaacttgaaaactaatttctg
gatgagatgaccaagtaaaacaactgcaggctgaggagctaaagggcagg
caatatcaaatgagtgaggactcattttctgcagatgctttaagaatctg
agaattggctggagagatggctcagtggttaagaacaccgactgctctcc
cagatgtcctgatttcaattcccagcaaccacatggtggctcaccaccat
ctgtaatgggatctgatgccctcttctggtgtgtctgaagacagtgacag
tgtatttaaataaaacaaagaatcagcgaattacattgattataatatta
aaatactcataaaattaaaggaatagggcctgaactatggcttaatttac
attaattagttaacattaatcacacagtaaggagctcttttcatgaacag
cagtttactcttgctgtgtttacatcatgtgttcattaaaatcacagaaa
gcattagtgaagaggcctaaatgagtcaagagattctgaagatgagaaac
tggccaaagagatggcagagtatattaactatggagagtcgagagccaaa
ctctgagttcttttgtatgggctcagcgatttgcagagactcagataggc
atcttagacctgcagccttgaactagggaaagagagtggctattgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_4987019_4987536
seq2: B6Ng01-238K24.b_48_565

seq1  GAATTCACCTCTTCAGCAGGGTAATTTTAATTTGCATTTCAATGGTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCTTCAGCAGGGTAATTTTAATTTGCATTTCAATGGTGGCT  50

seq1  AATAAGGCCAAACATTTTTCTTCATTTGTTTTATTGGCCATTTGTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGCCAAACATTTTTCTTCATTTGTTTTATTGGCCATTTGTCTTCT  100

seq1  ATCTCTTGAGCACTGTGTGTTCATTTCATTGGTCCATTTTTAAATAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGAGCACTGTGTGTTCATTTCATTGGTCCATTTTTAAATAAGGA  150

seq1  TGTTCAGGTGCTTTTGTTGTTATTTAGTATTTTACATTCTTTGTATATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGTGCTTTTGTTGTTATTTAGTATTTTACATTCTTTGTATATAC  200

seq1  GAAATATTAAAAATCTGCCAAATATCAAATGTTAGCAGCCTTATTTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTAAAAATCTGCCAAATATCAAATGTTAGCAGCCTTATTTATAA  250

seq1  TAGCCAGAAGTGGGAAAGAACCCAGATGTCCCTCAACTGAGGAATGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGAAGTGGGAAAGAACCCAGATGTCCCTCAACTGAGGAATGCATA  300

seq1  CAGAAAATGCGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGCGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAT  350

seq1  GAATTTATGAAATTCTTAACCAAATGGATGGATCTGGAGGGTATCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATGAAATTCTTAACCAAATGGATGGATCTGGAGGGTATCATTCT  400

seq1  AAGTGAGGTAACCAAGTCACAAAAGAACACACATGATATACACTCACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGGTAACCAAGTCACAAAAGAACACACATGATATACACTCACTGA  450

seq1  TAAGTGGATATTAGCCCAGATGCGTAGAATCCTTCTTAGAAGGGGGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGATATTAGCCCAGATGCGTAGAATCCTTCTTAGAAGGGGGAACA  500

seq1  AAATACCCATGGAAGGAG  518
      ||||||||||||||||||
seq2  AAATACCCATGGAAGGAG  518


seq1: chr4_5135208_5136261
seq2: B6Ng01-238K24.g_71_1118 (reverse)

seq1  TTGCAATAACCACTCTC-TTCCCTAGTTCCAAGGCTGCAAGTCCTTAGAT  49
      |||||||| |||||||| |||||||||| |||||||||| || || ||||
seq2  TTGCAATAGCCACTCTCTTTCCCTAGTT-CAAGGCTGCAGGT-CTAAGAT  48

seq1  GGCCTATCCTTGAGTCTCTGCAAATCGCTGAGCCCCTTACAAAAG-ACTC  98
       |||||||  |||||||||||||||||||||| ||| |||||||| ||||
seq2  -GCCTATC--TGAGTCTCTGCAAATCGCTGAG-CCCATACAAAAGAACTC  94

seq1  AGAGTTTGGCTCTCGACTCTCCATAGTTAATATACTCTGCCATCTCTTTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGGCTCTCGACTCTCCATAGTTAATATACTCTGCCATCTCTTTG  144

seq1  GCCAGTTTTCTCATCTTTCAG-ATCTCTTGACCTCATTTAGGCCTCTTCA  197
      ||||| ||||||||| ||||| ||||||||| ||||||||||||||||||
seq2  GCCAG-TTTCTCATC-TTCAGAATCTCTTGA-CTCATTTAGGCCTCTTCA  191

seq1  CTAATGCTTTCTGTGATTTTAATGAACACATGATGTAAACACAGCAAGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTTTCTGTGATTTTAATGAACACATGATGTAAACACAGCAAGAG  241

seq1  TAAACTGCTGTTCATGAAAAGAGCTCCTTACTGTGTGATTAATGTTAACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGCTGTTCATGAAAAGAGCTCCTTACTGTGTGATTAATGTTAACT  291

seq1  AATTAATGTAAATTAAGCCATAGTTCAGGCCCTATTCCTTTAATTTTATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGTAAATTAAGCCATAGTTCAGGCCCTATTCCTTTAATTTTATG  341

seq1  AGTATTTTAATATTATAATCAATGTAATTCGCTGATTCTTTGTTTTATTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTAATATTATAATCAATGTAATTCGCTGATTCTTTGTTTTATTT  391

seq1  AAATACACTGTCACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACTGTCACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCC  441

seq1  ATTACAGATGGTGGTGAGCCACCATGTGGTTGCTGGGAATTGAAATCAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGATGGTGGTGAGCCACCATGTGGTTGCTGGGAATTGAAATCAGG  491

seq1  ACATCTGGGAGAGCAGTCGGTGTTCTTAACCACTGAGCCATCTCTCCAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGGAGAGCAGTCGGTGTTCTTAACCACTGAGCCATCTCTCCAGC  541

seq1  CAATTCTCAGATTCTTAAAGCATCTGCAGAAAATGAGTCCTCACTCATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCAGATTCTTAAAGCATCTGCAGAAAATGAGTCCTCACTCATTT  591

seq1  GATATTGCCTGCCCTTTAGCTCCTCAGCCTGCAGTTGTTTTACTTGGTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGCCTGCCCTTTAGCTCCTCAGCCTGCAGTTGTTTTACTTGGTCA  641

seq1  TCTCATCCAGAAATTAGTTTTCAAGTTAGAAGCAAAGCCAAGGGTCCTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCAGAAATTAGTTTTCAAGTTAGAAGCAAAGCCAAGGGTCCTTA  691

seq1  CAAAGTTTATCCTTACAGAGTTTACTTAAATGTTCTCCACCAAATATACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTATCCTTACAGAGTTTACTTAAATGTTCTCCACCAAATATACA  741

seq1  CCTTCTTCATGTTTATTTGTATATTTGCACGCATGAATACATGGTGGAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCATGTTTATTTGTATATTTGCACGCATGAATACATGGTGGAAA  791

seq1  GTGCATGTCTGAATGACTGTGTTCCTGTGCAGATCAGAGGACAACTTGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTCTGAATGACTGTGTTCCTGTGCAGATCAGAGGACAACTTGTG  841

seq1  CAATGGACCACCCCTTCTTCTGTGTGCACTCTACAGTTCAACTTAGTGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGACCACCCCTTCTTCTGTGTGCACTCTACAGTTCAACTTAGTGTG  891

seq1  TTGGAATTAACTAAGATGCCTTTATCTACAGAACCAGTTCATATGTTCCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTAACTAAGATGCCTTTATCTACAGAACCAGTTCATATGTTCCC  941

seq1  CCCACTATTTTTCATGAAAGTTTTTTTTTTCCTTCTTTATAGAAAACTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTATTTTTCATGAAAGTTTTTTTTTTCCTTCTTTATAGAAAACTAT  991

seq1  TGTAAGTGCATTTAAATTTTTGAAGAAAATTGACTGCCTTGATAGGTACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTGCATTTAAATTTTTGAAGAAAATTGACTGCCTTGATAGGTACA  1041

seq1  AGAATTC  1054
      |||||||
seq2  AGAATTC  1048


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