BAC Information

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BAC

Clone NameB6Ng01-238O18
Chromosome4 (Build37)8 (Build37)
Map Location 18,917,097 - 18,917,18968,846,803 - 68,847,929
singlet/doubletsingletsinglet
Overlap geneLOC435772
Upstream geneMmp16, LOC667251
Downstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238O18.bB6Ng01-238O18.g
ACCGA049489GA049490
length4081,119
definitionB6Ng01-238O18.b B6Ng01-238O18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,917,097 - 18,917,189)(68,846,803 - 68,847,929)
sequence
gaattcacaactgaaggatctcgaatgactgagaaacacctaaagaaatg
ttcgaagtccttagtgatcagagaaatgcaaatcaaaacaaccctgagat
tccaccttacaccaaatagaatggctaacagaaaacctcaatgacaacac
atgtcatgtcagagaggatgtagagaaagaggaacactcctccatttctg
gtgggattgcaagctggtacaaccactctgaaaatcaatctgtagtttct
tcagaaaattggaagacccagctatactactcttgtgaatatacccaaaa
gatgccccaccatgctacagaggcacgtattccactatgttcatagcagc
cattttgtgatagccagaagctggaaaaatgacagaagaatggatacaga
aaatgtgg

gaattcactgaaaagagtagatgaggtattgccatatctaaaaacaaaac
tggaagatagtaagttgtgatcagacataaaaattcataggcagcattgg
acataagccaaatgtgtttttacagtgtctgtcataagccatgggagggc
ttgatgtattaaatattacttttggaatctgctgtgaatataatcataaa
ttagagctggagaaagtggataatgttgattcaaatcaaagaaatatgag
agaagcacggtaaaaaacaaaacacctactcttttcatgaaggaaaagca
gtgtgagcttccagccacacccactacctcaaacatacagttaaagcagc
ccacaggaaacacaaataagccaccattgtcatcttatctattcttggca
aaggcctcgccctagcctggccattgttcgagctgttaaagaaaggcctt
tgatacttctctttgtcctcagataaccattcctttctctttccatgaca
aagtcacattgatacccagaaaatgaatggcttagagagacataggctat
aaagagacaaataaaaaggaaacagaagttatgggtggagtaataagatg
gtcttcaggcatttaaacctctaacttctcatatcctaggtccctggacc
attaagcattattctaacagtctactctgcaggtagtctccttgccatgg
ctcctgcagatctctgacatgagttacaggagtagtgacatcaaatggag
gctatcaatagtgctttgagtgttgggacttagtgccatcatacttatcc
ccagccctgcctgagcatgcactcagcgccaccaactggaggaaattgat
gcctacagagaaactggaaactccagaatcaacaggagagtgcctgatta
attaatatatgattatagaagaaaggttgaagttgaaaatgtagcataga
gaaacaataactggaaatatactttcagactagtacattatgaatattta
tgtttagggaaaggtagatccacgaatagaggctagaaataatcatagaa
ttgaaaatataaactggaaccacagtagttggccacagcagaaccaatgg
aagaatcaaatttttctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_18917097_18917189
seq2: B6Ng01-238O18.b_379_456 (reverse)

seq1  CCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTAGGTTCTTTCC  50
      ||||||||||||||||||||| |||||       ||       | |||||
seq2  CCACATTTTCTGTATCCATTCTTCTGT-------CA-------TTTTTCC  36

seq1  AGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGA  93
      ||||||||||||| | ||| | |||||||||||||||||||||
seq2  AGCTTCTGGCTATCACAAA-ATGGCTGCTATGAACATAGTGGA  78


seq1: chr8_68846803_68847929
seq2: B6Ng01-238O18.g_66_1184 (reverse)

seq1  ATAGAAAAATTTGATTCCTTCCATTGTGTCTGCTGT-GCCAACTACTGTG  49
      |||||||||||||||| |||||||||  |||||||| |||||||||||||
seq2  ATAGAAAAATTTGATT-CTTCCATTGGTTCTGCTGTGGCCAACTACTGTG  49

seq1  TTTTCAAGTTTAATATTTTCAATTCTATGATTTATTTTCTAGCTTCTTAT  99
        ||| ||||| ||||||||||||||||||||   |||||||| || |||
seq2  -GTTCCAGTTT-ATATTTTCAATTCTATGATT--ATTTCTAGCCTC-TAT  94

seq1  TCGTGGTATCTTACCTTTCCCCTAAACATAAATATTCATATTGTACTAGT  149
      |||||| ||| ||||||| ||||||||||||||||||||| |||||||||
seq2  TCGTGG-ATC-TACCTTT-CCCTAAACATAAATATTCATAATGTACTAGT  141

seq1  CTGAAAGTATATTTCCAGTTATTGTTCTCT-TATGCTACATTTTCAACTT  198
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  CTGAAAGTATATTTCCAGTTATTGTT-TCTCTATGCTACATTTTCAACTT  190

seq1  CAACCTTTCTTCTATAATCATATATTAATTAATCAGGCACTCTCCTGTTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTTCTTCTATAATCATATATTAATTAATCAGGCACTCTCCTGTTG  240

seq1  ATTCTGGAG-TTCCAGTTTCTCTGTAGGCATCAATTTCCTCCAGTTGGTG  297
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGAGTTTCCAGTTTCTCTGTAGGCATCAATTTCCTCCAGTTGGTG  290

seq1  GCGCTGAGTGCATGCTCAGGCAGGGCTGGGGATAAGTATGATGGCACTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGAGTGCATGCTCAGGCAGGGCTGGGGATAAGTATGATGGCACTAA  340

seq1  GTCCCAAACACTCAAAGCACTATTGATAGCCTCCATTTGATGTCACTACT  397
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCC-AACACTCAAAGCACTATTGATAGCCTCCATTTGATGTCACTACT  389

seq1  CCTGTAACTCATGTCAGAGATCTGCAGGAGCCATGGCAAGGAGACTACCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAACTCATGTCAGAGATCTGCAGGAGCCATGGCAAGGAGACTACCT  439

seq1  GCAGAGTAGACTGTTAGAATAATGCTTAATGGTCCAGGGACCTAGGATAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTAGACTGTTAGAATAATGCTTAATGGTCCAGGGACCTAGGATAT  489

seq1  GAGAAGTTAGAGGTTTAAATGCCTGAAGACCATCTTATTACTCCACCCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTAGAGGTTTAAATGCCTGAAGACCATCTTATTACTCCACCCAT  539

seq1  AACTTCTGTTTCCTTTTTATTTGTCTCTTTATAGCCTATGTCTCTCTAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGTTTCCTTTTTATTTGTCTCTTTATAGCCTATGTCTCTCTAAG  589

seq1  CCATTCATTTTCTGGGTATCAATGTGACTTTGTCATGGAAAGAGAAAGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATTTTCTGGGTATCAATGTGACTTTGTCATGGAAAGAGAAAGGA  639

seq1  ATGGTTATCTGAGGACAAAGAGAAGTATCAAAGGCCTTTCTTTAACAGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTATCTGAGGACAAAGAGAAGTATCAAAGGCCTTTCTTTAACAGCT  689

seq1  CGAACAATGGCCAGGCTAGGGCGAGGCCTTTGCCAAGAATAGATAAGATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAATGGCCAGGCTAGGGCGAGGCCTTTGCCAAGAATAGATAAGATG  739

seq1  ACAATGGTGGCTTATTTGTGTTTCCTGTGGGCTGCTTTAACTGTATGTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGTGGCTTATTTGTGTTTCCTGTGGGCTGCTTTAACTGTATGTTT  789

seq1  GAGGTAGTGGGTGTGGCTGGAAGCTCACACTGCTTTTCCTTCATGAAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGTGGGTGTGGCTGGAAGCTCACACTGCTTTTCCTTCATGAAAAG  839

seq1  AGTAGGTGTTTTGTTTTTTACCGTGCTTCTCTCATATTTCTTTGATTTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGTTTTGTTTTTTACCGTGCTTCTCTCATATTTCTTTGATTTGA  889

seq1  ATCAACATTATCCACTTTCTCCAGCTCTAATTTATGATTATATTCACAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACATTATCCACTTTCTCCAGCTCTAATTTATGATTATATTCACAGC  939

seq1  AGATTCCAAAAGTAATATTTAATACATCAAGCCCTCCCATGGCTTATGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCAAAAGTAATATTTAATACATCAAGCCCTCCCATGGCTTATGAC  989

seq1  AGACACTGTAAAAACACATTTGGCTTATGTCCAATGCTGCCTATGAATTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGTAAAAACACATTTGGCTTATGTCCAATGCTGCCTATGAATTT  1039

seq1  TTATGTCTGATCACAACTTACTATCTTCCAGTTTTGTTTTTAGATATGGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTGATCACAACTTACTATCTTCCAGTTTTGTTTTTAGATATGGC  1089

seq1  AATACCTCATCTACTCTTTTCAGTGAATTC  1127
      ||||||||||||||||||||||||||||||
seq2  AATACCTCATCTACTCTTTTCAGTGAATTC  1119


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