BAC Information

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BAC

Clone NameB6Ng01-239H08
Chromosome4 (Build37)
Map Location 17,990,341 - 18,120,793
singlet/doubletdoublet
Overlap geneMmp16
Upstream geneLOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239H08.bB6Ng01-239H08.g
ACCGA049878GA049879
length2681,182
definitionB6Ng01-239H08.b B6Ng01-239H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,120,526 - 18,120,793)(17,990,341 - 17,991,512)
sequence
tcccggtcttccttgacagtatgcacatcagacactgcccttggctccct
gaaatatggctgctcctccgtctcatggagatgtggtttgctcatcttgg
tgtctgctagcacagagtaagtataactgttaagtataactgtctttatt
taaaatatactttttgtatgcatgctaattaatccaatattttttctatt
tttaaaatagtttatatttaaattgtgtgtatatatgtgtgtgacaggga
gagggagagggagaggga

gaattccagggagcttaccacttttcattcttactactttcgttttgtac
tcagcaaatatatttgcaattgtttaatgcttattgaatatattatgtgt
atgcacatgtgcatgtgtgaaagatagagagcacatgtaagcatgtgtgt
gtgcatagacacatgtgtgtctgccatatgtgtgggcagacaaaaatgtg
aattcagtactttccttccactatatgagtccagaagacctagctcaggt
catcagacttattagcaaaaaacccttaccactgcaccatctaatcagtc
taggtatgtttcttttgttgtatggtctgagttcaactatatttaagaag
agacaatatttttttagtggtaatagaacataaaatgtcgagatttaaat
ttttatcataagagtacagccctcctaagaatttaagttagaatttattt
tgttaaaaaaataaaaaataaaaagattagtccaagtttttgctgcattt
ctctcatgagcactcaatgactaaacccatatattttttttctgtactac
ttgaaacaacaacatagtggaaaaacggaaatgatcatcaatagggaatt
tagtattagacaattcaatggaatataacataaaattaagattatatcgc
attacacatatgagtaacatatcaatattttaagtgtactatttcagaac
aaaatgtggagattcacagcacagttaacccacatacatatgaaggcaag
cagtggaaatgaatacaagaaaggccaaacataaactatttaggaataaa
aagtagattgttaggaatatgaatgttcaacccagtagctatgtgtttat
acatctgtgtcataaatatgtatatgatatattagtgatatatgtgttta
tacttgtatatatatatatatatatatatatacacagttatatatgcaaa
acatcccattaagcaaaagacaattaaagtttcaattgccacaatgttag
gacaaatgaggatagttattctctcaattaagaaaaattgaagtttattg
caactcagaatgtgctcaggcataacatgcttgcctagaaacaatgcaaa
tagatttggctcagtcgttagtgccaaaaatacaggatagtacttgaaat
ttttaatcacttttgcttgtggctttttaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_18120526_18120793
seq2: B6Ng01-239H08.b_49_316 (reverse)

seq1  TCCCTCTCCCTCTCCCTCTCCCTGTCACACACATATATACACACAATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCCCTCTCCCTCTCCCTGTCACACACATATATACACACAATTTA  50

seq1  AATATAAACTATTTTAAAAATAGAAAAAATATTGGATTAATTAGCATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAACTATTTTAAAAATAGAAAAAATATTGGATTAATTAGCATGCA  100

seq1  TACAAAAAGTATATTTTAAATAAAGACAGTTATACTTAACAGTTATACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAGTATATTTTAAATAAAGACAGTTATACTTAACAGTTATACTT  150

seq1  ACTCTGTGCTAGCAGACACCAAGATGAGCAAACCACATCTCCATGAGACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGCTAGCAGACACCAAGATGAGCAAACCACATCTCCATGAGACG  200

seq1  GAGGAGCAGCCATATTTCAGGGAGCCAAGGGCAGTGTCTGATGTGCATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCAGCCATATTTCAGGGAGCCAAGGGCAGTGTCTGATGTGCATAC  250

seq1  TGTCAAGGAAGACCGGGA  268
      ||||||||||||||||||
seq2  TGTCAAGGAAGACCGGGA  268


seq1: chr4_17990341_17991512
seq2: B6Ng01-239H08.g_65_1246

seq1  GAATTCCAGGGAGCTTACCACTTTTCATTCTTACTACTTTCGTTTTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGCTTACCACTTTTCATTCTTACTACTTTCGTTTTGTAC  50

seq1  TCAGCAAATATATTTGCAATTGTTTAATGCTTATTGAATATATTATGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAATATATTTGCAATTGTTTAATGCTTATTGAATATATTATGTGT  100

seq1  ATGCACATGTGCATGTGTGAAAGATAGAGAGCACATGTAAGCATGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATGTGCATGTGTGAAAGATAGAGAGCACATGTAAGCATGTGTGT  150

seq1  GTGCATAGACACATGTGTGTCTGCCATATGTGTGGGCAGACAAAAATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAGACACATGTGTGTCTGCCATATGTGTGGGCAGACAAAAATGTG  200

seq1  AATTCAGTACTTTCCTTCCACTATATGAGTCCAGAAGACCTAGCTCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTACTTTCCTTCCACTATATGAGTCCAGAAGACCTAGCTCAGGT  250

seq1  CATCAGACTTATTAGCAAAAAACCCTTACCACTGCACCATCTAATCAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACTTATTAGCAAAAAACCCTTACCACTGCACCATCTAATCAGTC  300

seq1  TAGGTATGTTTCTTTTGTTGTATGGTCTGAGTTCAACTATATTTAAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATGTTTCTTTTGTTGTATGGTCTGAGTTCAACTATATTTAAGAAG  350

seq1  AGACAATATTTTTTTAGTGGTAATAGAACATAAAATGTCGAGATTTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATATTTTTTTAGTGGTAATAGAACATAAAATGTCGAGATTTAAAT  400

seq1  TTTTATCATAAGAGTACAGCCCTCCTAAGAATTTAAGTTAGAATTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCATAAGAGTACAGCCCTCCTAAGAATTTAAGTTAGAATTTATTT  450

seq1  TGTTAAAAAAATAAAAAATAAAAAGATTAGTCCAAGTTTTTGCTGCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAAAAATAAAAAATAAAAAGATTAGTCCAAGTTTTTGCTGCATTT  500

seq1  CTCTCATGAGCACTCAATGACTAAACCCATATATTTTTTTTCTGTACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATGAGCACTCAATGACTAAACCCATATATTTTTTTTCTGTACTAC  550

seq1  TTGAAACAACAACATAGTGGAAAAACGGAAATGATCATCAATAGGGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACAACAACATAGTGGAAAAACGGAAATGATCATCAATAGGGAATT  600

seq1  TAGTATTAGACAATTCAATGGAATATAACATAAAATTAAGATTATATCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTAGACAATTCAATGGAATATAACATAAAATTAAGATTATATCGC  650

seq1  ATTACACATATGAGTAACATATCAATATTTTAAGTGTACTATTTCAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACATATGAGTAACATATCAATATTTTAAGTGTACTATTTCAGAAC  700

seq1  AAAATGTGGAGATTCACAGCACAGTTAACCCACATACATATGAAGGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGGAGATTCACAGCACAGTTAACCCACATACATATGAAGGCAAG  750

seq1  CAGTGGAAATGAATACAAGAAAGGCCAAACATAAACTATTTAGGAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAATGAATACAAGAAAGGCCAAACATAAACTATTTAGGAATAAA  800

seq1  AAGTAGATTGTTAGGAATATGAATGTTCAACCCAGTAGCTATGTGTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATTGTTAGGAATATGAATGTTCAACCCAGTAGCTATGTGTTTAT  850

seq1  ACATCTGTGTCATAAATATGTATATGATATATTAGTGATATATGTGTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTGTCATAAATATGTATATGATATATTAGTGATATATGTGTTTA  900

seq1  TACTTGTATATATATATATATATATATATATACACAGTTATATATGCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTATATATATATATATATATATATATACACAGTTATATATGCAAA  950

seq1  ACATCCCA-TAAGC-AAAGACAA-TAAAG-TTCAA-TGCCACCATGTTAG  995
      |||||||| ||||| |||||||| ||||| ||||| |||||| |||||||
seq2  ACATCCCATTAAGCAAAAGACAATTAAAGTTTCAATTGCCACAATGTTAG  1000

seq1  GACAAAATGAGGATAGTTA-TCTCTCAATTA--GAAAATTGAAG-TTATT  1041
      ||| ||||||||||||||| |||||||||||   |||||||||| |||||
seq2  GAC-AAATGAGGATAGTTATTCTCTCAATTAAGAAAAATTGAAGTTTATT  1049

seq1  GAAACTCAGAATGTGCTCAGCATTAACATGCTGCCCTAGAA--CATG--A  1087
      | ||||||||||||||||||   |||||||||  |||||||   |||  |
seq2  GCAACTCAGAATGTGCTCAGGCATAACATGCTTGCCTAGAAACAATGCAA  1099

seq1  ATAGATTTTGGCTCAATCCTTAAGTGCC-AAAATACAAGGATAGTTACTT  1136
      ||||| ||||||||| || || |||||| ||||||| ||||||| |||||
seq2  ATAGA-TTTGGCTCAGTCGTT-AGTGCCAAAAATAC-AGGATAG-TACTT  1145

seq1  TGGAAATTTT--ATTACTTTTG-TTGTGGCTTTTTAAAG  1172
        ||||||||  || ||||||| ||||||||||||||||
seq2  --GAAATTTTTAATCACTTTTGCTTGTGGCTTTTTAAAG  1182


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